mRNA_C-linearis_contig111.1507.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1507.1
Unique NamemRNA_C-linearis_contig111.1507.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 3.620e-40
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 1
Query:    4 AVASSSDARHQLESIVKRELDSFKTAPGIGVSWEDKGQLVRGKPLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP 288
            A ASSS  R Q+ESI+ RE+D+FK  PG+ VSWE+KGQ VRGKPLEWWRVKAR+YP LA+LARRVLCIPA QAQSERVF++AGLVVTKTR+R+DP
Sbjct:  437 ANASSSPLRRQMESIISREVDAFKITPGLAVSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDP 531          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.740e-20
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   13 SSSDARHQLESIVKRELDSFKTAPGIGVSWEDK-----GQLVRGKPLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRL 282
            S+ + R QL +IV  E+ +FK APGI V W+ +      + V   PL+ WR K  +YP+LAALARRVL IP+SQAQSERVF+TAGL VT TRSRL
Sbjct:  439 SADEKREQLVAIVDMEVSAFKAAPGIRV-WDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRL 532          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.920e-17
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   37 LESIVKRELDSFKTAPGIGVSWEDK-GQLVRGKPLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP 288
            + S V+ EL +FK + GI +  EDK G  V   PL+WWRV+   +P LA LARRVL IPA+QA+SER+F+ AG +VTK R+ L P
Sbjct:  190 ITSSVRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAP 274          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.450e-15
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 GAVASSS------DARHQLESIVKRELDSFKTAPGIGV-SWEDKGQLVRGKPLEWWRVKARKYPMLAALARRVLCIPASQAQSERV 237
            GA ASS+      + R QL S+V  E+ SF+T PGI +  W   G+ V   PL+WWR +  ++P LAALARRVL IP+SQA SERV
Sbjct:  464 GAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: A0A1A8B204_NOTFU (6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 1 n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8B204_NOTFU)

HSP 1 Score: 70.9 bits (172), Expect = 1.220e-13
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    1 GAVASSSDARHQLESIVKRELDSFKTAPGIGVSWEDKGQLVRGKPLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP 288
            G V    D    L  +V+ E+ S++ A  IGV  +         P  WW+    K+P +A +A+R+LC+P +   SER+F+TAG +V+  RSRL P
Sbjct:   24 GEVFKKQDQVKTLAQVVEDEVASYRLAESIGVDAD---------PFRWWKTNEHKFPHVAKVAKRLLCVPGTSVPSERIFSTAGDIVSANRSRLAP 110          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: UPI0007B8209D (zinc finger BED domain-containing protein 1-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8209D)

HSP 1 Score: 70.9 bits (172), Expect = 3.130e-13
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   34 QLESIVKRELDSF--KTAPGIGVSWEDKGQLVRGKPLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP 288
            Q E+ ++ EL +F  +T P +  +           P +WW+V   ++P LA LARR LCIPA+   SERVF+ AGL VT+ RSRL P
Sbjct:   83 QCEAGIEAELQNFLRETPPPLNCT-----------PTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTP 158          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: A0A8C9WTI1_SANLU (Uncharacterized protein n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9WTI1_SANLU)

HSP 1 Score: 71.6 bits (174), Expect = 1.720e-12
Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   46 IVKRELDSFKTAPGIGVSWEDKGQLVRGKPLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP 288
            I+K E+ S+ TA GI V          G PL WW++   KYP +A +AR  L +P S   SERVF+TAG +VT  RS L P
Sbjct:  515 IIKEEVASYLTASGITVD---------GDPLTWWKINESKYPDIAKMARCYLAVPGSSVPSERVFSTAGDIVTAKRSTLSP 586          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: UPI00148F4C44 (zinc finger BED domain-containing protein 1-like n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F4C44)

HSP 1 Score: 70.1 bits (170), Expect = 1.820e-12
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1
Query:  130 KPLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP 288
            +P +WW+V A ++P LA LAR+ LCIPA+   SERVF++AGL+V++ RSRL P
Sbjct:  171 QPTDWWKVNAGRFPRLAKLARQYLCIPATSVPSERVFSSAGLIVSRLRSRLTP 223          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 66.6 bits (161), Expect = 2.070e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  133 PLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP 288
            PLEWW+V A  YP+LA+LA+  LCIPA+   SERVF+TAG +V+  RS + P
Sbjct:   23 PLEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITP 74          
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Match: A0A3N0XFY2_ANAGA (Zinc finger BED domain-containing protein 1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0XFY2_ANAGA)

HSP 1 Score: 70.5 bits (171), Expect = 4.100e-12
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  133 PLEWWRVKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP 288
            PLEWW+   R++P LA LARR LCIP +   SERVF+ AGL V + RSRL P
Sbjct:  333 PLEWWKANERRFPRLATLARRYLCIPGTSVPSERVFSAAGLTVNRLRSRLTP 384          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE3.620e-4075.79Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI1.740e-2056.84Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JWI1_9PHAE1.920e-1752.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KUY5_9PHAE2.450e-1551.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1A8B204_NOTFU1.220e-1336.466-phosphofructo-2-kinase/fructose-2, 6-biphosphata... [more]
UPI0007B8209D3.130e-1343.68zinc finger BED domain-containing protein 1-like n... [more]
A0A8C9WTI1_SANLU1.720e-1245.68Uncharacterized protein n=1 Tax=Sander lucioperca ... [more]
UPI00148F4C441.820e-1256.60zinc finger BED domain-containing protein 1-like n... [more]
A0A1A8CIX7_9TELE2.070e-1257.69Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A3N0XFY2_ANAGA4.100e-1259.62Zinc finger BED domain-containing protein 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:481143..481433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927485.7641582-CDS-C-linearis_contig111:481142..4814331622927485.7641582-CDS-C-linearis_contig111:481142..481433Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 481143..481433 -
1690879728.2181754-CDS-C-linearis_contig111:481142..4814331690879728.2181754-CDS-C-linearis_contig111:481142..481433Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 481143..481433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1507.1prot_C-linearis_contig111.1507.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 481143..481433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1507.1

>prot_C-linearis_contig111.1507.1 ID=prot_C-linearis_contig111.1507.1|Name=mRNA_C-linearis_contig111.1507.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
GAVASSSDARHQLESIVKRELDSFKTAPGIGVSWEDKGQLVRGKPLEWWR
VKARKYPMLAALARRVLCIPASQAQSERVFATAGLVVTKTRSRLDP*
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mRNA from alignment at C-linearis_contig111:481143..481433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1507.1 ID=mRNA_C-linearis_contig111.1507.1|Name=mRNA_C-linearis_contig111.1507.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at C-linearis_contig111:481143..481433- (Chordaria linearis ClinC8C monoicous)
GGTGCCGTCGCGAGCTCCTCGGATGCAAGGCACCAGCTGGAGAGCATCGT CAAACGGGAGCTGGACTCTTTCAAGACCGCGCCTGGGATAGGAGTGAGCT GGGAAGACAAGGGCCAGCTGGTTCGCGGCAAGCCACTTGAGTGGTGGCGT GTCAAGGCGCGGAAGTATCCCATGCTGGCCGCACTGGCGCGCCGGGTACT GTGTATCCCAGCATCTCAGGCGCAGTCGGAGCGCGTATTTGCGACGGCAG GGCTAGTTGTGACAAAGACACGCTCTCGACTGGACCCTTAA
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Coding sequence (CDS) from alignment at C-linearis_contig111:481143..481433-

>mRNA_C-linearis_contig111.1507.1 ID=mRNA_C-linearis_contig111.1507.1|Name=mRNA_C-linearis_contig111.1507.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig111:481143..481433- (Chordaria linearis ClinC8C monoicous)
GGTGCCGTCGCGAGCTCCTCGGATGCAAGGCACCAGCTGGAGAGCATCGT
CAAACGGGAGCTGGACTCTTTCAAGACCGCGCCTGGGATAGGAGTGAGCT
GGGAAGACAAGGGCCAGCTGGTTCGCGGCAAGCCACTTGAGTGGTGGCGT
GTCAAGGCGCGGAAGTATCCCATGCTGGCCGCACTGGCGCGCCGGGTACT
GTGTATCCCAGCATCTCAGGCGCAGTCGGAGCGCGTATTTGCGACGGCAG
GGCTAGTTGTGACAAAGACACGCTCTCGACTGGACCCTTAAGGTGCCGTC
GCGAGCTCCTCGGATGCAAGGCACCAGCTGGAGAGCATCGTCAAACGGGA
GCTGGACTCTTTCAAGACCGCGCCTGGGATAGGAGTGAGCTGGGAAGACA
AGGGCCAGCTGGTTCGCGGCAAGCCACTTGAGTGGTGGCGTGTCAAGGCG
CGGAAGTATCCCATGCTGGCCGCACTGGCGCGCCGGGTACTGTGTATCCC
AGCATCTCAGGCGCAGTCGGAGCGCGTATTTGCGACGGCAGGGCTAGTTG
TGACAAAGACACGCTCTCGACTGGACCCTTAA
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