mRNA_C-linearis_contig111.1506.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1506.1
Unique NamemRNA_C-linearis_contig111.1506.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 496 bits (1277), Expect = 2.570e-172
Identity = 264/360 (73.33%), Postives = 298/360 (82.78%), Query Frame = 1 
Query:   52 LTFIAAFLPSPAAAVEYTVTTCADLADVDNTLATGLTIDSSTFFCDEYTRFRVRNTMTLKATGTAVEFSNFSLKVLGELTVEPDVTFTGVVDQVKNGGVLSVDEGAKATFVGTADFSDNSVLIKQIGPISCGEGCTRIGRGLSYVTKKGGAVHNKGMLTFEGDATFVRNLVSTDDSVEQGKAGALSNTGSGSILFKGKLTMEDNEADGSFEGQGGGIYNRGDIVVDGESYFSNNQASDGGAIYQTKIGTMTFNAMTNFFENIAIDPVGGGVYNEG-VMDFNAGSFFEGNIASSSGDGGLGGAIYNWSGGIITLTGSTTFKANMALAGGAIFNAGANEDFDLPAAVTTFPADTVFVDNDAD 1128
            LT IA+ L +PAAAVEYTV TCADLADVD+T  T LTID+STF CDEYTRFRVRN MTLKAT  AVEF NFSLKVLGELTVEPDV F GVVDQVKNGGVLSV EGA ATF+GT++FSDNSV +KQIGP+SCG+GCTRIGRGLSY+ KKGGA+HNKG LTFEGDATF RN V T+DSVEQGKAGA+SNTGSG+ILFK KLTM+DNEADG FEG GG IYNRG+IVV+GES FS N +SDGG IYQT IGTMTFN    F EN A D +GGG+ N+G V++ NAGS FE N AS SGDGGLGGAIYN + G++TL GSTTF+ N A  GGAI+ +  +E+   PA+VTTFP DTVF DN A+
Sbjct:    6 LTLIASLLAAPAAAVEYTVATCADLADVDDTQVTSLTIDASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQVKNGGVLSVAEGATATFMGTSEFSDNSVAVKQIGPVSCGDGCTRIGRGLSYIVKKGGAIHNKGTLTFEGDATFERNEVHTEDSVEQGKAGAISNTGSGTILFKSKLTMKDNEADGFFEGIGGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTFNGAATFSENSAYDLLGGGLMNDGGVVNINAGSLFELNGASGSGDGGLGGAIYNTNAGVVTLMGSTTFRENAAFMGGAIYTSDGDEENGEPASVTTFPDDTVFEDNSAE 365
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BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 477 bits (1228), Expect = 7.090e-165
Identity = 263/370 (71.08%), Postives = 294/370 (79.46%), Query Frame = 1 
Query:   34 MKPASCLTFIAAFLPSPAAAVEYTVTTCADLADVDNTLATGLTIDSSTFFCDEYTRFRVRNTMTLKATGTAVEFSNFSLKVLGELTVEPDVTFTGVVDQVKNGGVLSVDEGAKATFVGTADFSDNSVLIKQIGPISCGEGCTRIGRGLSYVTKKGGAVHNKGMLTFEGDATFVRNLVSTDDSVEQGKAGALSNTGSGSILFKGKLTMEDNEADGSFEGQGGGIYNRGDIVVDGESYFSNNQASDGGAIYQTKIGTMTFNAMTNFFENIAIDPVGGGVYNEG-VMDFNAGSFFEGNIASSSGDGGLGGAIYNWSGGIITLTGSTTFKANMALAGGAIFNAGANEDFDLPAAVTTFPADTVFVDNDADVRED 1140
            MKP S LT IA  L +PAAAVEYTV TCADLADVD+T  TGLTID+STF CDEYTRF VRN+MTLKAT  AVEF NFSLKVLGELTVEPDVTF GVVDQVKNGGVLSV EGA +TF+GT++FSDNSV +KQ+G +SCG+GC R GRGLSYV KKGGA+HNKG LTFEGDATF RN V T+DSVEQGKAGA+SNTGSG+I FK KLTM+DNEA+G FEG GG IYNRG+I+VDGES FS N ASDGG IYQT IG MTFN+M  F EN A +  GGG+ N G V++ NAGS FE N AS SGDGGLGGAIYN + G +TL GSTTF+ N A  GGAI+    +      A+VTTFP DTVF DN AD   D
Sbjct:    1 MKPCS-LTLIAGLLAAPAAAVEYTVATCADLADVDDTQVTGLTIDTSTFACDEYTRFPVRNSMTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQVKNGGVLSVAEGATSTFMGTSEFSDNSVAVKQLGAVSCGDGCERTGRGLSYVVKKGGAIHNKGTLTFEGDATFERNAVHTEDSVEQGKAGAISNTGSGTIWFKSKLTMKDNEAEGFFEGLGGAIYNRGEIIVDGESLFSLNTASDGGGIYQTPIGKMTFNSMATFSENSAYELRGGGLMNYGGVVNINAGSLFELNGASGSGDGGLGGAIYNGNEGAVTLMGSTTFRENAAYEGGAIYTDDGSVANGEAASVTTFPDDTVFEDNRADFCPD 369
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BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 5.260e-78
Identity = 137/241 (56.85%), Postives = 169/241 (70.12%), Query Frame = 1 
Query:  382 VGTADFSDNSVLIKQIGPISCGEGCTRIGRGLSYVTKKGGAVHNKGMLTFEGDATFVRNLVSTDDSVEQGKAGALSNTGSGSILFKGKLTMEDNEADGSFEGQGGGIYNRGDIVVDGESYFSNNQASDGGAIYQTKIGTMTFNAMTNFFENIAIDPVGGGVYNEG-VMDFNAGSFFEGNIASSSGDGGLGGAIYNWSGGIITLTGSTTFKANMALAGGAIFNAGANEDFDLPAAVTTFPAD 1101
            +GT++FS+NSV +KQ G ISCG+GCTR  RGL+Y+ KKGGA+HNKG LTF+GDATF RN+  T+ S ++G  GA+SNTGSG+ILFK KLTM+DN+AD +F G GG IYNRG+I+V+G S FS N A+ GG I+QT IGTMTFN M  F EN A +P GGG+ N G V++ NAGS FE N AS+SGDGG GGAI+N                     GGAI+      D D P +VTTFP D
Sbjct:    1 MGTSEFSNNSVAVKQFGRISCGDGCTRSERGLTYIVKKGGAIHNKGTLTFDGDATFERNVAHTESSNQRGNGGAISNTGSGTILFKSKLTMKDNQADANFAGLGGAIYNRGEIIVEGASLFSLNHAAAGGGIHQTSIGTMTFNGMATFSENFAGEPTGGGLTNNGGVVNINAGSLFEHNWASASGDGGFGGAIFNTKXXXXXXXXXXXXXXXXXHWGGAIYT----NDADGPGSVTTFPDD 237
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BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 1.670e-74
Identity = 163/355 (45.92%), Postives = 201/355 (56.62%), Query Frame = 1 
Query:  106 VTTCADLADVDNTLATGLTIDSSTFFCDEYTRFRVRNTMTLKATGTAVEFSNFSLKVLGELTVEPDVTFTGVVDQVKNGGVLSVDEGAKATFVGTADFSDNSVLIKQIGPISCGEGCTRIGRGLSYVTKKGGAVHNKGMLTFEGDATFVRNLVSTDDSVEQGKA--GALSNTGSGSILFKGKLTMEDNEADGSFEG-QGGGIYNRGDIVVDGESYFSNNQASDGGAIYQTKIGTMTFNAMTNFFENIAIDPVGGGVYN-EGVMDFNAGSFFEGNIASSSGDGGLGGAIYNWSGGIITLTGSTTFKANMALAGGAIFNAGAN------EDFDLPAAVTTFPADTVFVDNDADVRED 1140
            V +C + A +D  + T +TI  + F CDEYTR  +R+ M LK++   V FSNF+LKV G LTVEPDV FTGV    KNGGVL ++ GA   F GTA+FSDNS++   I   +  E           + +KGGA+H KG LTFE DATF  NL   +D +  G    GA+S    GSI F GKLTM DNEAD  F G QGG I+NRGDIVVDGE+ F+ N    GGAI+Q K  T+ FN    F  N  +D  GG + N  G +  NAGS F    A +SGDGGL             LTGSTTF+ N    GGA+FN+         ED        ++P DT+F DNDA    D
Sbjct:   26 VGSCTEFAAIDRKVETEVTITEADFACDEYTRLSIRSNMVLKSSVGKVTFSNFALKVYGSLTVEPDVVFTGVSLVEKNGGVLKLELGAVGVFKGTAEFSDNSIISTSIDESTEEE-----------ILRKGGAIHTKGSLTFEKDATFSGNL---NDRLYYGSGPGGAISVHVKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGRGGAIFQEKWATLVFNDFVTFTSNKCLDTFGGTIANIGGDVTANAGSLFFDGFAENSGDGGLXXXXXXXXXXXXXLTGSTTFRQNYGNWGGAVFNSAVPNAYFTAEDESYVMPTISYPEDTIFEDNDAQYCND 366
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BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.570e-45
Identity = 91/160 (56.88%), Postives = 115/160 (71.88%), Query Frame = 1 
Query:  652 MEDNEADGSFEGQGGGIYNRGDIVVDGESYFSNNQASDGGAIYQTKIGTMTFNAMTNFFENIAIDPVGGGVYNEG-VMDFNAGSFFEGNIASSSGDGGLGGAIYNWSGGIITLTGSTTFKANMALAGGAIFNAGANEDFDLPAAVTTFPADTVFVDNDAD 1128
            M +N+ DG + G GG IYNRG+I V+GES FS N++SDGG IYQT IG MTFN+M  FF N+A +  GGG+ N+G V++ NAGS FE N A+++ DGG GGAI+N +GG++TL G TTF+ N A  GGAI+      D   PA+VTTFP DTVF DN AD
Sbjct:    1 MNENDTDGQYGGLGGAIYNRGEITVEGESLFSENRSSDGGGIYQTSIGIMTFNSMATFFHNVAENLRGGGLMNDGGVVNINAGSLFEQNFAAANADGGRGGAIHNRNGGVVTLMGPTTFRENGAWWGGAIYT-----DDGYPASVTTFPDDTVFEDNSAD 155
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BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 8.490e-42
Identity = 84/108 (77.78%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:   34 MKPASCLTFIAAFLPSPAAAVEYTVTTCADLADVDNTLATGLTIDSSTFFCDEYTRFRVRNTMTLKATGTAVEFSNFSLKVLGELTVEPDVTFTGVVDQVKNGGVLSV 357
            MKP S LTFIA+ L +PAAAVEY VTTCADLADVD+T  TGLTID++TF CDEYTRFRVRN+MTLKAT +AVEF NFSLKVLGELTVEPDVTF GVVDQ   G   SV
Sbjct:    1 MKPVS-LTFIASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQSSEGTTPSV 107
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BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.410e-12
Identity = 79/284 (27.82%), Postives = 123/284 (43.31%), Query Frame = 1 
Query:  106 VTTCADLADVDNTLATGLTIDSSTFF----CDEYTRFRVR-NTMTLKATGTAVEF------SNFSLKVLG--ELTVEPDVTFTG--VVDQVKNGGVLSVDEGAKATFVGTADFSDNSVLIKQIGPISCGEGCTRIGRGLSYVTKKGGAVHNKGMLTFEGDATFVRNLVSTDDSVEQGKAGALSNTGSGSILFKGKLTMEDNEADGSFEGQGGGIYNRGDIVVDGESYFSNNQASDGGAIYQTKIGTMTF-NAMTNFFENIAI-DPVGGGVYNEGVMDFNAGSFF 906
            + TC DL    N   T   ID    F    C+ +T   +  NT+TL ++     F      +N  L V    EL  E  V F G   V+ + +GG + V EG+   F+   +  D  ++ ++                 +   + GG V   G    +G+ATF R  ++       G  GA+    +GS+ F   + + +      F GQGGGIYN G++ + G+S F +  AS G AIY  +     F N  + FF ++   D VG G+ N G  +F+  + F
Sbjct:   22 IETCEDLQAAFNLTQTQDVIDEIHPFQDIECETFTNMTMTSNTLTLNSSENLDNFFGSSSLTNVRLVVTNGAELIWETHVNFIGDEEVELMVDGGAVFVGEGSTVHFLNDLEMEDIRIINERDEDSD-----------FASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISASSGVAIYNGEGAEFYFTNDASAFFRDLNNRDSVGSGLTNLGYFEFSGPALF 294
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BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.140e-8
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:  496 GGAVHNKGMLTFEGDATFVR-NLVSTDDSVEQGKAGALSNTGSGSILFKGKLTMEDNEADGSFEGQGGGIYNRGDIVVDGESYFSNNQASDGGAIYQTKIGTMTF-NAMTNFFENIAI-DPVGGGVYNEGVMDFNAGSFF 906
            GG V   G  T  GDATF     V   +S   G  GA+  + +GS+ F   +T+ +      F GQGGGIYN G++ V G S F +  AS G A+Y  +   + F N  T  F +++  D VG  +Y  G  +F+  + F
Sbjct:   23 GGCVRTAGTFTVNGDATFTGCESVGAGESAP-GPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISASSGVAVYNGEGAQLRFTNGATACFRDLSNRDSVGSALYYLGYFEFSGPALF 161
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FLJ6_ECTSI2.570e-17273.33Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI7.090e-16571.08Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FL58_ECTSI5.260e-7856.85Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5KTD4_9PHAE1.670e-7445.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQG1_ECTSI1.570e-4556.88Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FQG2_ECTSI8.490e-4277.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGT1_ECTSI2.410e-1227.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG63_ECTSI2.140e-835.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:434564..439717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.2
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog1392490.JHZX01000001_gene559
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1HZV9@117743,4NGEX@976,COG3210@1,COG3210@2
COG Functional cat.U
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons7
Model size1286
Cds size1227
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927485.6355743-UTR-C-linearis_contig111:434563..4345891622927485.6355743-UTR-C-linearis_contig111:434563..434589Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 434564..434589 -
1690879728.1243143-UTR-C-linearis_contig111:434563..4345891690879728.1243143-UTR-C-linearis_contig111:434563..434589Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 434564..434589 -
1622927485.7322087-UTR-C-linearis_contig111:439684..4397171622927485.7322087-UTR-C-linearis_contig111:439684..439717Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 439685..439717 -
1690879728.2075746-UTR-C-linearis_contig111:439684..4397171690879728.2075746-UTR-C-linearis_contig111:439684..439717Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 439685..439717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927485.6469517-CDS-C-linearis_contig111:434589..4348661622927485.6469517-CDS-C-linearis_contig111:434589..434866Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 434590..434866 -
1690879728.134561-CDS-C-linearis_contig111:434589..4348661690879728.134561-CDS-C-linearis_contig111:434589..434866Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 434590..434866 -
1622927485.6569386-CDS-C-linearis_contig111:435279..4354161622927485.6569386-CDS-C-linearis_contig111:435279..435416Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 435280..435416 -
1690879728.1427853-CDS-C-linearis_contig111:435279..4354161690879728.1427853-CDS-C-linearis_contig111:435279..435416Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 435280..435416 -
1622927485.6750007-CDS-C-linearis_contig111:435933..4360171622927485.6750007-CDS-C-linearis_contig111:435933..436017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 435934..436017 -
1690879728.1517253-CDS-C-linearis_contig111:435933..4360171690879728.1517253-CDS-C-linearis_contig111:435933..436017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 435934..436017 -
1622927485.685852-CDS-C-linearis_contig111:436714..4368041622927485.685852-CDS-C-linearis_contig111:436714..436804Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 436715..436804 -
1690879728.160554-CDS-C-linearis_contig111:436714..4368041690879728.160554-CDS-C-linearis_contig111:436714..436804Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 436715..436804 -
1622927485.695395-CDS-C-linearis_contig111:437448..4376041622927485.695395-CDS-C-linearis_contig111:437448..437604Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 437449..437604 -
1690879728.1761034-CDS-C-linearis_contig111:437448..4376041690879728.1761034-CDS-C-linearis_contig111:437448..437604Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 437449..437604 -
1622927485.7122123-CDS-C-linearis_contig111:437778..4379641622927485.7122123-CDS-C-linearis_contig111:437778..437964Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 437779..437964 -
1690879728.184554-CDS-C-linearis_contig111:437778..4379641690879728.184554-CDS-C-linearis_contig111:437778..437964Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 437779..437964 -
1622927485.7223587-CDS-C-linearis_contig111:439387..4396841622927485.7223587-CDS-C-linearis_contig111:439387..439684Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 439388..439684 -
1690879728.192833-CDS-C-linearis_contig111:439387..4396841690879728.192833-CDS-C-linearis_contig111:439387..439684Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 439388..439684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1506.1prot_C-linearis_contig111.1506.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 434590..439684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1506.1

>prot_C-linearis_contig111.1506.1 ID=prot_C-linearis_contig111.1506.1|Name=mRNA_C-linearis_contig111.1506.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=409bp
MKPASCLTFIAAFLPSPAAAVEYTVTTCADLADVDNTLATGLTIDSSTFF
CDEYTRFRVRNTMTLKATGTAVEFSNFSLKVLGELTVEPDVTFTGVVDQV
KNGGVLSVDEGAKATFVGTADFSDNSVLIKQIGPISCGEGCTRIGRGLSY
VTKKGGAVHNKGMLTFEGDATFVRNLVSTDDSVEQGKAGALSNTGSGSIL
FKGKLTMEDNEADGSFEGQGGGIYNRGDIVVDGESYFSNNQASDGGAIYQ
TKIGTMTFNAMTNFFENIAIDPVGGGVYNEGVMDFNAGSFFEGNIASSSG
DGGLGGAIYNWSGGIITLTGSTTFKANMALAGGAIFNAGANEDFDLPAAV
TTFPADTVFVDNDADVREDDGAHAYTFRIFLLEQAAQACFVAAAVARARQ
DIAINISM*
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mRNA from alignment at C-linearis_contig111:434564..439717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1506.1 ID=mRNA_C-linearis_contig111.1506.1|Name=mRNA_C-linearis_contig111.1506.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5154bp|location=Sequence derived from alignment at C-linearis_contig111:434564..439717- (Chordaria linearis ClinC8C monoicous)
GCACCTTTCTCCACGCACACAACCCGCGAAGCCATGAAGCCTGCCTCCTG
CCTCACCTTCATCGCAGCTTTCTTGCCATCGCCTGCCGCTGCGGTCGAAT
ACACGGTCACGACGTGTGCCGATCTCGCGGACGTGGACAACACCCTGGCC
ACAGGCCTCACCATCGATAGCAGCACCTTCTTCTGCGATGAATACACCCG
CTTCCGTGTGCGCAACACCATGACCCTCAAGGCCACCGGTACAGCTGTGG
AGTTCTCCAACTTCTCGCTCAAGGTCCTTGGGGAGCTCACTGTCGAGCCC
GACGTGACCTTCACAGGCGTCGTGGACCAGGTACTACCTACGTTTACCCC
CGAGAGTTGACGGTCGTACCGGTACGTTGTGTGATGGAAGAGGAGTTCTT
TTTTGGACCGTTTGGGTTGGTGGCTCGGATCGACTTGGATTATCACCGCC
AAATTCCTTCCCATGGACAGGCATGGCGTGGCAAAACACACAACCCAAGT
GTAGGGTTCGGGGTAAGGGTTGACCACTTGCTCTTCGCGGGCGTCCTTTG
GCTACGAATGGTGGCTCACAGCAGTAGATGGACTCTGTGTGTTGTGCAGT
TGCGCCTACAGCAGTATGCACGATGCACACGGCCGTCATACTGATTTTTT
TATTTTTTTACGGAACATAGTCTAAACATACCCCCGCAATTTAGTTGCCC
CGCCGCGTGGTTGAGGAGGAATCCTGCCTTGCAGATACCCACCCTATGGA
GGCTTCCTACTCGCCAGCAACGAAAAGGCTAGCTATATCACTGCTGTTGG
CGATATTGTTGAGATGTGGACACCTTGCGGCATGTCCAGACGCGTTTCCA
AAAATACGAAATTTGAAAATTAACTTGTGTGCCGGAGAAGGCGCGCAACT
ACAGCAGGCGTTGTGCGAACGCGCGAACGCACAACGTCTGCTTGTGCGAC
TCCATCACCGCTCACCGCTCACCTCTGTATCTATGTAGTATGTACGGACA
TACAAGTTGATGGCGAACTGACTCACGCGGAAAACGACTCAATAACCCGC
GGCAGTCTATCTGAGATGCTGTGCGATGGGTTCACAAACATGTTCGTTTT
ATCGAGACTCTGCTGTTGGCGATGACCCGGTGCCATGGTAGCAGCCTCGA
CTCGCGTGGTCGCCAACTTGATGGAACGAGGGAAAATGACGATCCAGCCT
CGACCAGCAGCTGTGTTTCGAACGTCCCTGCACCATCCAACACCCAATAC
ACAACACAGAAACAGCCCTGTGACCCCATCCCAGTATTAATAGAAGGATC
TCTTGATCTTTTCCTTTTTCCTTCTTCTCCTCGAGATCCAACACGACAAA
CGGTCTTGCGTCTGGCTCACTTCGAGCTGATCCCTTAATTTGGTCATTCA
AAAAAAAAAGCGGGGTTGACTGTCTTGGTGGGTGGCGAAAGCGATCTCCG
CGGATCGCATGGACCTCACGCATTGCGGCATACTGCTTGAAGCAGTAACA
GCAGCAGTAGTGCGGGCACACTAGTCAGTCTTTTGGGAGGGTGTTTGCCC
CTCCAAGACGCCACGCGTACTGCTGCTACTACTACTACTACTACTACAGG
TCTTAAGTTGTAGGAAGACTGCGGCGTGACCGTGTCGTTCGCCTCATCAC
AGCAGTCCGGTGCCATAATTCTACTTTATGTAGCGCATTTGAAGGGAATA
TACATACGTAGGAGGTGTGCGCCACCTCATCTCTACATGCGTGGCTTACA
CAGGTGAAGAACGGCGGCGTCCTATCTGTCGACGAGGGCGCCAAGGCTAC
CTTCGTGGGCACTGCCGATTTCAGCGATAACTCCGTACTCATCAAGCAAA
TCGGACCGATATCATGTGGAGAAGGCTGCACAAGGATCGGGCGTGGCCTG
AGCTACGTGACAAAGAAGGGCGGTGCTGTCCACAACAAGGTGGTGTTGAT
TGTTGTGTTTGAAGCATGCGTGTTTCATGGTGCATGCTCCTTCAGCTCCA
GCAGCTTTAGCGCATCCACACTACCTGCTCTTGCCAACGAGAGTGTTGAA
TTTGTTTGGCGACGGTGACCCTGTCCCTAGAAATTACCCTCTCATTCTTT
GCTGTGCACCCAGGGAATGCTGACATTCGAGGGGGACGCCACCTTTGTGA
GGAACTTGGTGAGCACGGACGACTCTGTGGAGCAGGGGAAGGCCGGCGCT
CTCTCCAACACCGGGTCGGGCAGCATTCTCTTCAAGGGCAAGCTCACCAT
GGAGGACAACGAGGCCGATGTGCGTTTCGTACTCCAACAGATTAGTGTGT
GTGTGTTTCTGTTTTTGCGTCAAGCGGACGTTTTTTGTTCAAGATGCATA
CATGCGTATGATAGCCCGACGCATGGTGACGTGACTTCGTGACTTTACTT
GATTTGCTGTTTTTTCCCGTGGGGTTTGTGTTTGCCTCGCACCACAACAG
TCTGCCCCTACTGTGTACGAAGTATTGCATAGTAGACATGATCATGATAT
CCATGTTTTTTGGTTTGGTGCAAAGTATACTATTCTTTGGAAATTGCAGG
GTTCCTTTGCTGCTCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTACAA
AATCGCACGTAGTCTCCCTCCCAATCCCAGGTGGCACAATGAAAAAATCG
AGACGAGAGTCGATCGTTTGATAGTTTCAGACGGCGACATATGCTGGGTC
TCCAAGAAAGATTCGAAGCAACGTGCCACGAGAAGAGGTTTGAAGGGCCT
GACAGCCTGAGAGGTGTTCGCGTGTCAAAAACTCTAGACATCGAAATATC
GTGACCCGGCGCCCCCCTCTCTCTCTCTCTTTCTGTCTGTCTATATCAAA
CGCACGTACTGCTTGGTGCTTTGGGTTTTCGCACAACACCCTGCACTGCA
CTGCACACAACAGGGGAGCTTCGAGGGGCAGGGCGGCGGCATCTACAACC
GTGGAGACATCGTTGTGGACGGCGAGAGCTACTTCTCCAATAACCAAGCT
TCGGTACGTTAGCTCTTTTTAGCTTTCGTTGAGGGTGACATGTGATGTTC
GATGTTTGATGGTTGGGGTTTGGGTGTGGCGTTGGTCGTGGTGACGACAC
GACACGGGCGTTTCTCGAAGTGCCTCAATATCGCGGTGCCTCCTGGGCAT
ATGTACGAGTTGGATACCGGCAATGGAGCAGGCACGGCGTTGCCGATGTT
CGGATATTCGAAGGACATCCCGTGGTTTCAACTCATCCTTGTGGTGTTTT
GCATGTAATGTCTCCGAATGCGTTGCAATTTTTCAAGCCGCACATATACA
AGTTCACAACATTCCTACCTATGGAGCGGTAGGGCGATAGGCTTGTCTGT
GCCTCAAGGATCAGGGTTAGGGTTGACGGAAAAACCCACAAATGCTTGTC
CTACTGCTGTAGTTGTATGTGTTGTCCCCAGCGCCAAACGTCCACCTTGC
AATGCAACCATTGAAGCTATCGGCTAACCCTGTTCCTAACCCTGGAATAT
GTTGCGTCTTGGGAGAAGTATTGCACAACAGCGTAGGGAAAGGCAAGGCA
AGGTAAGGCACGTGTTGCCTGGTGTTGGAGTACTTTCCGACCAAACTAAC
GCTAACGCCTTCTGGTCGCCTCTATGTTCCTCTGATCGGCTCCGTCTTCT
TCGGCTCGGGTATGGCATGACATGACACGACCTGATACGGGCGTGGGCAG
GACGGAGGCGCAATCTATCAAACCAAGATCGGGACAATGACGTTCAACGC
CATGACCAACTTCTTCGAAAACATTGCCATTGATGTACGTGCTGGGGCAG
AGATAGTAATGTGCTTATCGCGCTTGCAGGATTGATCAAGTTTTTTCAAA
CGTCGACGTGAACGCAGCAGTAGACTGGTTCGAAATGAGCTAGCGCTCAC
CCCATCTTACTGGAGCCACCCGTGGTGCATATTCGCTTCGAAAGCACTGT
AAGTCGATCACATCGAATATTTCAATTTTTCTTGGCCACTCTGTGGTGTC
ATTCGTGCACTTTTGTCCTGCGGTATATTGTTCAGCATTTACAGTACTAC
ACATCATCTGGTTTAGTCTACCCCGCCGTTCGATACGTAGACAACTTGTA
TTTCTACAGTTTGGCTTCGCCCCCATGACTCACTAAGATTCGCTGGCCCT
ACCATGTGCCACACATCCACATACATATCGATTGGCGTTAGCCCTTATCC
TCGAATCGCATATCCCCCCTCGAAACGAACCGCGAAACGGATCGTCAAAC
GAACCGTCAAACGAACCGTCAAACGAACCGTCAAACGAACTACAATGCCA
GCCTGTTGGCGGTGGCGTGTACAATGAGGGCGTGATGGACTTCAACGCCG
GCAGCTTCTTCGAGGGAAACATCGCCAGCAGTTCTGGTGACGGCGGGCTG
GGTGGTGCCATCTACAACTGGAGTGGCGGGATAATCACGTGAGTATTGTA
TCAAATGCCATGCATACACCTTGCCATAGCGGTGCTGTGTGGATGAACGA
GTAGTGTGGATGTGCGTGCGATCTGACTTGATTGCCGCTCGTGTAAGGTG
AAAGTCACTAAAGGCGCAAGGGAGGCGTTTTCTCCAGAAGAAGAGGGACG
CCTAACGGGCCCTTGCCAAGAGCGCCACCCACGCCGTTGCGGTTAGGGTT
AGGCTGCTGGGCATTTTTTGTCTGTCGTCCTGTTGGACTCGTTCGACTCT
GCCGTGCCGCTTCATGCTCTTGTATATCGGCTTCACTGCTGTCCTTTTTT
TCTTTTCTCTTTCCGCTTGTTGGTTTGCTCCTTCCCTCTACTTGTGCGCA
TCGCATCGCATCGCATCGCATCGCATCGCAACGCTTGTATAAATCTGTCA
GGCTCACGGGGTCGACTACCTTCAAGGCAAACATGGCCTTAGCTGGTGGG
GCTATCTTCAACGCTGGCGCGAACGAAGACTTCGACCTTCCCGCTGCCGT
CACCACCTTCCCGGCCGACACGGTATTTGTCGACAACGACGCCGATGTGA
GGGAGGATGATGGTGCCCATGCTTACACCTTTCGTATATTTTTGCTTGAG
CAGGCTGCTCAAGCTTGTTTTGTGGCAGCTGCCGTAGCACGTGCTCGACA
AGACATTGCCATCAACATTTCCATGTAGCATCATTTCCAAAATCCCGAGA
GGGC
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Coding sequence (CDS) from alignment at C-linearis_contig111:434564..439717-

>mRNA_C-linearis_contig111.1506.1 ID=mRNA_C-linearis_contig111.1506.1|Name=mRNA_C-linearis_contig111.1506.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2454bp|location=Sequence derived from alignment at C-linearis_contig111:434564..439717- (Chordaria linearis ClinC8C monoicous)
ATGAAGCCTGCCTCCTGCCTCACCTTCATCGCAGCTTTCTTGCCATCGCC
TGCCGCTGCGGTCGAATACACGGTCACGACGTGTGCCGATCTCGCGGACG
TGGACAACACCCTGGCCACAGGCCTCACCATCGATAGCAGCACCTTCTTC
TGCGATGAATACACCCGCTTCCGTGTGCGCAACACCATGACCCTCAAGGC
CACCGGTACAGCTGTGGAGTTCTCCAACTTCTCGCTCAAGGTCCTTGGGG
AGCTCACTGTCGAGCCCGACGTGACCTTCACAGGCGTCGTGGACCAGATG
AAGCCTGCCTCCTGCCTCACCTTCATCGCAGCTTTCTTGCCATCGCCTGC
CGCTGCGGTCGAATACACGGTCACGACGTGTGCCGATCTCGCGGACGTGG
ACAACACCCTGGCCACAGGCCTCACCATCGATAGCAGCACCTTCTTCTGC
GATGAATACACCCGCTTCCGTGTGCGCAACACCATGACCCTCAAGGCCAC
CGGTACAGCTGTGGAGTTCTCCAACTTCTCGCTCAAGGTCCTTGGGGAGC
TCACTGTCGAGCCCGACGTGACCTTCACAGGCGTCGTGGACCAGGTGAAG
AACGGCGGCGTCCTATCTGTCGACGAGGGCGCCAAGGCTACCTTCGTGGG
CACTGCCGATTTCAGCGATAACTCCGTACTCATCAAGCAAATCGGACCGA
TATCATGTGGAGAAGGCTGCACAAGGATCGGGCGTGGCCTGAGCTACGTG
ACAAAGAAGGGCGGTGCTGTCCACAACAAGGTGAAGAACGGCGGCGTCCT
ATCTGTCGACGAGGGCGCCAAGGCTACCTTCGTGGGCACTGCCGATTTCA
GCGATAACTCCGTACTCATCAAGCAAATCGGACCGATATCATGTGGAGAA
GGCTGCACAAGGATCGGGCGTGGCCTGAGCTACGTGACAAAGAAGGGCGG
TGCTGTCCACAACAAGGGAATGCTGACATTCGAGGGGGACGCCACCTTTG
TGAGGAACTTGGTGAGCACGGACGACTCTGTGGAGCAGGGGAAGGCCGGC
GCTCTCTCCAACACCGGGTCGGGCAGCATTCTCTTCAAGGGCAAGCTCAC
CATGGAGGACAACGAGGCCGATGGAATGCTGACATTCGAGGGGGACGCCA
CCTTTGTGAGGAACTTGGTGAGCACGGACGACTCTGTGGAGCAGGGGAAG
GCCGGCGCTCTCTCCAACACCGGGTCGGGCAGCATTCTCTTCAAGGGCAA
GCTCACCATGGAGGACAACGAGGCCGATGGGAGCTTCGAGGGGCAGGGCG
GCGGCATCTACAACCGTGGAGACATCGTTGTGGACGGCGAGAGCTACTTC
TCCAATAACCAAGCTTCGGGGAGCTTCGAGGGGCAGGGCGGCGGCATCTA
CAACCGTGGAGACATCGTTGTGGACGGCGAGAGCTACTTCTCCAATAACC
AAGCTTCGGACGGAGGCGCAATCTATCAAACCAAGATCGGGACAATGACG
TTCAACGCCATGACCAACTTCTTCGAAAACATTGCCATTGATGACGGAGG
CGCAATCTATCAAACCAAGATCGGGACAATGACGTTCAACGCCATGACCA
ACTTCTTCGAAAACATTGCCATTGATCCTGTTGGCGGTGGCGTGTACAAT
GAGGGCGTGATGGACTTCAACGCCGGCAGCTTCTTCGAGGGAAACATCGC
CAGCAGTTCTGGTGACGGCGGGCTGGGTGGTGCCATCTACAACTGGAGTG
GCGGGATAATCACCCTGTTGGCGGTGGCGTGTACAATGAGGGCGTGATGG
ACTTCAACGCCGGCAGCTTCTTCGAGGGAAACATCGCCAGCAGTTCTGGT
GACGGCGGGCTGGGTGGTGCCATCTACAACTGGAGTGGCGGGATAATCAC
GCTCACGGGGTCGACTACCTTCAAGGCAAACATGGCCTTAGCTGGTGGGG
CTATCTTCAACGCTGGCGCGAACGAAGACTTCGACCTTCCCGCTGCCGTC
ACCACCTTCCCGGCCGACACGGTATTTGTCGACAACGACGCCGATGTGAG
GGAGGATGATGGTGCCCATGCTTACACCTTTCGTATATTTTTGCTTGAGC
AGGCTGCTCAAGCTTGTTTTGTGGCAGCTGCCGTAGCACGTGCTCGACAA
GACATTGCCATCAACATTTCCATGTAGGCTCACGGGGTCGACTACCTTCA
AGGCAAACATGGCCTTAGCTGGTGGGGCTATCTTCAACGCTGGCGCGAAC
GAAGACTTCGACCTTCCCGCTGCCGTCACCACCTTCCCGGCCGACACGGT
ATTTGTCGACAACGACGCCGATGTGAGGGAGGATGATGGTGCCCATGCTT
ACACCTTTCGTATATTTTTGCTTGAGCAGGCTGCTCAAGCTTGTTTTGTG
GCAGCTGCCGTAGCACGTGCTCGACAAGACATTGCCATCAACATTTCCAT
GTAG
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