mRNA_C-linearis_contig111.1487.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1487.1
Unique NamemRNA_C-linearis_contig111.1487.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig111.1487.1 vs. uniprot
Match: D7G0J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.060e-24
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = -1 
Query:    1 MQGEKQGERPTTAVQTDAEKSKFDQFDREALAYLITPEQRRALGGLAT-TPTISFNQWAEQWNKDVAKTERDVKAGCLGPVEDPAKQINRKQPFDLSNRWTESKKDMNTARTV 336
            MQG   GER TTAV T AEK   D+FDRE   +L++PE R+ + G    T +I+F+ +A +WN+DV + ER+  AG L    D  K+INRK PFDL + WTES+K++NTARTV
Sbjct:   64 MQGATPGERMTTAVITQAEK---DKFDREVFQFLVSPEVRQQVAGHRRGTQSINFDAFAAKWNEDVGEIERNEVAGRLEVSGDANKKINRKAPFDLQSWWTESRKEVNTARTV 173
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J1_ECTSI2.060e-2451.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:110148..110501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927480.1872451-CDS-C-linearis_contig111:110147..1105011622927480.1872451-CDS-C-linearis_contig111:110147..110501Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 110148..110501 +
1690879725.0220387-CDS-C-linearis_contig111:110147..1105011690879725.0220387-CDS-C-linearis_contig111:110147..110501Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 110148..110501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1487.1prot_C-linearis_contig111.1487.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 110148..110501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1487.1

>prot_C-linearis_contig111.1487.1 ID=prot_C-linearis_contig111.1487.1|Name=mRNA_C-linearis_contig111.1487.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
YCASGVHILLGLCPPVAEVERLLSVDLLGGIFNRPQATSLHVSLCFSHVL
VPLLRPLIETDRWGSSEAAKRSSLLRRDQVRESLAVELVELGFLCVGLDG
GGRTLSLLFPLHRAKNL*
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mRNA from alignment at C-linearis_contig111:110148..110501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1487.1 ID=mRNA_C-linearis_contig111.1487.1|Name=mRNA_C-linearis_contig111.1487.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at C-linearis_contig111:110148..110501+ (Chordaria linearis ClinC8C monoicous)
TACTGTGCGAGCGGTGTTCATATCCTTCTTGGACTCTGTCCACCGGTTGC
TGAGGTCGAACGGTTGCTTTCGGTTGATCTGCTTGGCGGGATCTTCAACC
GGCCCCAAGCAACCAGCCTTCACGTCTCTCTCTGTTTTAGCCACGTCCTT
GTTCCACTGCTCCGCCCATTGATTGAAACTGATCGTTGGGGTAGTAGCGA
GGCCGCCAAGCGCTCGTCTCTGCTCCGGCGTGATCAAGTACGCGAGAGCC
TCGCGGTCGAACTGGTCGAACTTGGATTTCTCTGCGTCGGTCTGGACGGC
GGTGGTAGGACGCTCTCCTTGCTTTTCCCCCTGCATCGAGCGAAGAACCT
GTAG
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Coding sequence (CDS) from alignment at C-linearis_contig111:110148..110501+

>mRNA_C-linearis_contig111.1487.1 ID=mRNA_C-linearis_contig111.1487.1|Name=mRNA_C-linearis_contig111.1487.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig111:110148..110501+ (Chordaria linearis ClinC8C monoicous)
TACTGTGCGAGCGGTGTTCATATCCTTCTTGGACTCTGTCCACCGGTTGC
TGAGGTCGAACGGTTGCTTTCGGTTGATCTGCTTGGCGGGATCTTCAACC
GGCCCCAAGCAACCAGCCTTCACGTCTCTCTCTGTTTTAGCCACGTCCTT
GTTCCACTGCTCCGCCCATTGATTGAAACTGATCGTTGGGGTAGTAGCGA
GGCCGCCAAGCGCTCGTCTCTGCTCCGGCGTGATCAAGTACGCGAGAGCC
TCGCGGTCGAACTGGTCGAACTTGGATTTCTCTGCGTCGGTCTGGACGGC
GGTGGTAGGACGCTCTCCTTGCTTTTCCCCCTGCATCGAGCGAAGAACCT
GTAGTACTGTGCGAGCGGTGTTCATATCCTTCTTGGACTCTGTCCACCGG
TTGCTGAGGTCGAACGGTTGCTTTCGGTTGATCTGCTTGGCGGGATCTTC
AACCGGCCCCAAGCAACCAGCCTTCACGTCTCTCTCTGTTTTAGCCACGT
CCTTGTTCCACTGCTCCGCCCATTGATTGAAACTGATCGTTGGGGTAGTA
GCGAGGCCGCCAAGCGCTCGTCTCTGCTCCGGCGTGATCAAGTACGCGAG
AGCCTCGCGGTCGAACTGGTCGAACTTGGATTTCTCTGCGTCGGTCTGGA
CGGCGGTGGTAGGACGCTCTCCTTGCTTTTCCCCCTGCATCGAGCGAAGA
ACCTGTAG
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