mRNA_C-linearis_contig111.1486.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1486.1
Unique NamemRNA_C-linearis_contig111.1486.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:106772..106988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927480.1402583-CDS-C-linearis_contig111:106771..1068621622927480.1402583-CDS-C-linearis_contig111:106771..106862Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 106772..106862 +
1690879724.9995637-CDS-C-linearis_contig111:106771..1068621690879724.9995637-CDS-C-linearis_contig111:106771..106862Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 106772..106862 +
1622927480.1525202-CDS-C-linearis_contig111:106926..1069881622927480.1525202-CDS-C-linearis_contig111:106926..106988Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 106927..106988 +
1690879725.011111-CDS-C-linearis_contig111:106926..1069881690879725.011111-CDS-C-linearis_contig111:106926..106988Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 106927..106988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1486.1prot_C-linearis_contig111.1486.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 106772..106988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1486.1

>prot_C-linearis_contig111.1486.1 ID=prot_C-linearis_contig111.1486.1|Name=mRNA_C-linearis_contig111.1486.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=51bp
NQIITQLSRNPGLGRATTSSKLFMIQNVPTTKHHLSLQIQIHDNVPVVLK
R
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mRNA from alignment at C-linearis_contig111:106772..106988+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1486.1 ID=mRNA_C-linearis_contig111.1486.1|Name=mRNA_C-linearis_contig111.1486.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=217bp|location=Sequence derived from alignment at C-linearis_contig111:106772..106988+ (Chordaria linearis ClinC8C monoicous)
AATCAAATCATCACACAATTAAGTCGAAATCCAGGACTAGGAAGAGCTAC
CACCAGTTCAAAACTCTTTATGATTCAAAATGTTCCCACAAAGACCATTC
AATACACCTCACACACGAGAAATCTGAAACAACAACAAATAATACCAGTG
GTTTTCAAAACACCATCTCTCACTCCAAATCCAAATTCATGACAATGTTC
CTGTGGTACTCAAACGC
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Coding sequence (CDS) from alignment at C-linearis_contig111:106772..106988+

>mRNA_C-linearis_contig111.1486.1 ID=mRNA_C-linearis_contig111.1486.1|Name=mRNA_C-linearis_contig111.1486.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at C-linearis_contig111:106772..106988+ (Chordaria linearis ClinC8C monoicous)
AATCAAATCATCACACAATTAAGTCGAAATCCAGGACTAGGAAGAGCTAC
CACCAGTTCAAAACTCTTTATGATTCAAAATGTTCCCACAAAATCAAATC
ATCACACAATTAAGTCGAAATCCAGGACTAGGAAGAGCTACCACCAGTTC
AAAACTCTTTATGATTCAAAATGTTCCCACAACAAAACACCATCTCTCAC
TCCAAATCCAAATTCATGACAATGTTCCTGTGGTACTCAAACGCCAAAAC
ACCATCTCTCACTCCAAATCCAAATTCATGACAATGTTCCTGTGGTACTC
AAACGC
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