mRNA_C-linearis_contig110.1455.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1455.1
Unique NamemRNA_C-linearis_contig110.1455.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig110.1455.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 9.510e-33
Identity = 126/228 (55.26%), Postives = 140/228 (61.40%), Query Frame = 1 
Query:  226 RQAFAGVGGGG---EEPEKVAAAEGV-DLYEGQWKDGNHHGQGECHFEN-GXXXXXXXXXXXXXXXXXMVYTNGGGEYEGEFRGDARHGQGVYRSSSPPYTXXXXXXXXXXXXXGKLSSKDEGAYEGFFKRGTWKDGHLSGHAMVRYKTGDRYTGGSEKGLRSGKGTMFSVXXXXXXXXXXXXXXXXXXGLLRLPCGATVEGTWLIGNLIGNSKFSFPPNSEWNDPRY 894
            RQ FA  GGGG   +EPEKVAA  G  + Y+GQWK G  HGQGE HF N G    XXXXXXXXXXXXX                D RHG GV+  S P  T   XXXXXXXXXX KLS KD   +EGFF+                           E+G RSG+GTMF+   XXXXXXXXXXXXXXXX  LRLPCGA+VEG W++GNL+GNSKFSF P+SEWNDP Y
Sbjct:  134 RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKSGAFHGQGEYHFANSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXXLWCDLRHGHGVH--SGPDSTYDGXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 359
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BLAST of mRNA_C-linearis_contig110.1455.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.830e-7
Identity = 42/139 (30.22%), Postives = 58/139 (41.73%), Query Frame = 1 
Query:  337 QGECHFENGXXXXXXXXXXXXXXXXXMVYTNGGGE-YEGEFRGDARHGQGVYRSSSPPYTXXXXXXXXXXXXXGKL-----SSKDEGAYEGFFK----RGTWKDGHLSGHAMVRYKTGDRYTGGSEKGLRSGKGTMFSV 723
            +G  HF +                     T G  E Y+ +++  A HGQG  R +                  GK+       +DEG +         RG W +G LSG A  +Y  G+RYTGG E+G RSG+GTMF+ 
Sbjct:   15 EGRAHFHHDLQRLLGKAKWRAFKRSCAAATGGENEWYDKQWKAGACHGQGGIRFAGSGDMCVGSWVGNQMHGKGKIVHGGEGGEDEGTHNTSVNCVGSRGVWDNGQLSGQATAQYNYGNRYTGGFERGRRSGEGTMFAA 153
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0U8_ECTSI9.510e-3355.26Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=... [more]
D7G0U9_ECTSI5.830e-730.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:230127..233329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue1.9e-28
Seed eggNOG ortholog2880.D7G0U8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size897
Cds size897
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.5669954-CDS-C-linearis_contig110:230126..2301891622927472.5669954-CDS-C-linearis_contig110:230126..230189Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 230127..230189 +
1690879721.1792707-CDS-C-linearis_contig110:230126..2301891690879721.1792707-CDS-C-linearis_contig110:230126..230189Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 230127..230189 +
1622927472.5768256-CDS-C-linearis_contig110:230717..2308071622927472.5768256-CDS-C-linearis_contig110:230717..230807Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 230718..230807 +
1690879721.1916454-CDS-C-linearis_contig110:230717..2308071690879721.1916454-CDS-C-linearis_contig110:230717..230807Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 230718..230807 +
1622927472.5867758-CDS-C-linearis_contig110:230986..2311731622927472.5867758-CDS-C-linearis_contig110:230986..231173Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 230987..231173 +
1690879721.2035878-CDS-C-linearis_contig110:230986..2311731690879721.2035878-CDS-C-linearis_contig110:230986..231173Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 230987..231173 +
1622927472.5980024-CDS-C-linearis_contig110:231657..2317651622927472.5980024-CDS-C-linearis_contig110:231657..231765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 231658..231765 +
1690879721.2143853-CDS-C-linearis_contig110:231657..2317651690879721.2143853-CDS-C-linearis_contig110:231657..231765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 231658..231765 +
1622927472.6115897-CDS-C-linearis_contig110:232070..2322261622927472.6115897-CDS-C-linearis_contig110:232070..232226Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 232071..232226 +
1690879721.2246122-CDS-C-linearis_contig110:232070..2322261690879721.2246122-CDS-C-linearis_contig110:232070..232226Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 232071..232226 +
1622927472.6232088-CDS-C-linearis_contig110:232832..2329591622927472.6232088-CDS-C-linearis_contig110:232832..232959Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 232833..232959 +
1690879721.2373567-CDS-C-linearis_contig110:232832..2329591690879721.2373567-CDS-C-linearis_contig110:232832..232959Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 232833..232959 +
1622927472.635593-CDS-C-linearis_contig110:233163..2333291622927472.635593-CDS-C-linearis_contig110:233163..233329Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 233164..233329 +
1690879721.2455082-CDS-C-linearis_contig110:233163..2333291690879721.2455082-CDS-C-linearis_contig110:233163..233329Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 233164..233329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1455.1prot_C-linearis_contig110.1455.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 230127..233329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1455.1

>prot_C-linearis_contig110.1455.1 ID=prot_C-linearis_contig110.1455.1|Name=mRNA_C-linearis_contig110.1455.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=299bp
HSKGTLTYNNGATYSGSWVNDAGMACGTGTQTFGNGDHYEGGWKDGMMSG
QGTYTYANGYVYEGEWERDDKNGKGRQAFAGVGGGGEEPEKVAAAEGVDL
YEGQWKDGNHHGQGECHFENGDVYVGSWVDHRMEGKGKMVYTNGGGEYEG
EFRGDARHGQGVYRSSSPPYTYEGAWAGDLQHGFGKLSSKDEGAYEGFFK
RGTWKDGHLSGHAMVRYKTGDRYTGGSEKGLRSGKGTMFSVKTGYDFTGT
SENGVKNGPGLLRLPCGATVEGTWLIGNLIGNSKFSFPPNSEWNDPRY*
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mRNA from alignment at C-linearis_contig110:230127..233329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1455.1 ID=mRNA_C-linearis_contig110.1455.1|Name=mRNA_C-linearis_contig110.1455.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3203bp|location=Sequence derived from alignment at C-linearis_contig110:230127..233329+ (Chordaria linearis ClinC8C monoicous)
CACTCAAAGGGTACTCTGACGTACAATAACGGGGCTACCTACAGTGGATC
ATGGGTGAATGACGTGAAGGAAGGCCAAGGCAAGACGAAAAACAGATATA
TTGCTCGGAAATGGTGGAGAGGGCCTGCCCAGCACCGTATTATATCAGCA
GGAATGAATATGCTCCGTAGTACAGAGTTACCTCAGAGCTCGGGGGACCC
TTCAGAACGCAATGAGACGAGGCCTTTAACTAAGCGGCGGACATGCAAAC
AGTTGGGGTCTGCTACGAGTGAATTTGGGTCCTAATCCCAGTGGAGAGAA
TACGCCATCGAACGAATCCCGTGTTCGTTCGAAGCTATTGATCCTCGTCT
CGGTGAGAATTACGTGGGACGGCCAAAAGCACGTCAGATCACATTTGTGC
ATGTGAGTCGACTAGGAAGGGTGCCCTAGCATGGTGGGTCCAATGAGAGG
GGTGTGAATACTCAGTCAGGCCGTAAAAAATAGCGACGCTTCAACGATAA
TTCACTGGAATCTATTCATCTATGAACAACGGAGTCGTCTGCAGGAACGT
GCCACTACCAGAATGGAAACGTGTACACGGGCTCATGGAAGGCCGGCATG
GCGTGCGGTACCGGCACGCAGACGTTCGGAAACGGTGATCACTACGAAGG
AGGGTGGAAAGACGGCATGATGAGCGGGCAGGTGATCATGCCGAAAATTC
ATGGACATGTACCGTAAGATTCCCCTACAACCCTTCATACAGCAGACCAT
GATAGGGAATGAGTTCAAGGAACCCTTCGGACACAATGCACGACTCGAAA
GATCGCTTATTATGTCGCAAACCGCTATTACCACCGATGATCCGATGCTG
CCCTGCTCAGGGAACCTACACGTATGCCAACGGGTATGTGTACGAGGGTG
AATGGGAGAGGGACGACAAGAACGGGAAGGGGCGTCAAGCTTTCGCCGGC
GTTGGGGGAGGGGGAGAAGAGCCGGAGAAGGTGGCGGCGGCGGAAGGGGT
CGACTTGTACGAGGGCCAGTGGAAGGACGGAAATCACCATGGACAAGGTG
ATCGAAGCCGGCCAGATAGGGATGGGTCCTTGAAGGTCATGGTAGAGCCT
GTGCGGTATGGCGTTCCCCGCGCGCTCCCCCTTCGCCCAAAGTAGGTTCG
CGATCATGTTGAAAACCCTGTCGGCGGCGTAAGTTCCTATTTTCGCGGGG
TCGACATCTCGTGAGCAGATTTCATGGTTTCACTGGTGGAGCTCACTTGT
ACATGTACCCAGGTACAATTGTTCATGAGAAACCGTTGATGGAATGCGTT
TGTGCCATTCATAGCTGCTCGGCCGATGTGTCACATAATGCCTTGGAGTT
GCGCCTGAACTACTGCATAACCCGATGGTTGAGCGGCCGGGGCGCCTCGC
AGTCTAGACTGCGCCTCCGCAGTTCGGCCGTCAGACCGGGAGGTGCCGAA
TGAGAGTCCAATCGCTGGTCACCAACAAACGAGAATTACACCTGTGCACA
TTTCATGTCGTCGCTTGTACTCAAAACGCAGGGGAGTGCCACTTTGAAAA
TGGCGATGTCTACGTTGGCTCATGGGTCGACCATCGTATGGAGGGAAAGG
GGAAGATGGTGTACACCAACGGTGGCGGAGAGTACGAAGGTACTGAAGGC
GGTCGTGCGGTCACGGCACTAGGGTCAGATCGGCATCCGTCCCATCATTC
TTCTGTGGTAATGTTTGGGTTTAGACTGTAGACTGCAGCAGTGATATTCA
TTTGGGGCAGAAATACATCCCCATTCAGAAAGTCAGATCCTAGCGACATC
AGCGACTACGATAGAGTCGTCACGTGCAAGGCACCCGCCCTGCGTTTGTT
TCTCCTGTGGCGTATCTCAACTGCTCGTAGTCAGAAACAATCGTTTCCCT
GTTTCACCGTCGACCCGAACACTTCAACATTCACTGCCATGCAGGCGAGT
TTCGGGGCGACGCTAGACACGGCCAGGGCGTCTACCGCAGCTCTAGCCCC
CCCTACACCTACGAGGGAGCTTGGGCCGGAGACCTCCAACACGGCTTCGG
AAAGCTCAGCAGCAAGGATGAGGGCGCGTACGAAGGCTTCTTCAAGAGAG
GTATATGCTTGGATGTCTTGGAAGTCGACTGATACCAACAGCCGACAGCG
AACGACATGAAGGGAAGCTTGGAAAACGAATCGTTTTCATGTAGCAAGGG
GAGTGAAAAGATGGCTAAGCTCACTGTTCTCAATCGGCCACGGTTACCTA
TTCGCGAGTTGTTCACCGACATACGAAGTAAACTTCACCGGTGCTGCCTC
CTCCCCGCGTCTTCCATACGCAGGGAAGAAACACGGCGAGGGCAAGCTTC
GATCTGCCTTAGGCGATATCACTGAAGGTGATGAGGCTCCAATACTTCCA
TGGTTTCATGGTGGACTGGGGTCGATTTTGACACGAGCCCTCTTTGATAT
TGTCCACCCTGGCGAAGTAGTGAAACCTAGCATATATATGCGGTGCCCAG
TGGACAAGCTTACCGCGAATAGGTTTTCGCTGGCTAGGCCATGATTTCTT
ATCTGCACGTGCATATATTAGTTCCGGTTCTGCATAGATCAGCGTGAAGC
TTCTTCCGGATCGCTCAACGAGCCGGCACGACACATCAGTCGCACAGACC
AACGCCAAAGAGCCGGTATTATTGCGTCCACATTGAAACCGTTATGGCCT
TGAAAGGCACGTGGAAGGACGGGCACCTCTCGGGCCACGCCATGGTTCGG
TACAAGACCGGCGATCGGTACACTGGGGGCTCCGAGAAAGGTCTGAGGAG
CGGCAAGGGAACGATGTTTTCCGTCAAGACAGGGTGAGAATAGGCAGGCT
ACTATATTCCTGTACTGCGTACTGATTGCCGTGCTTTGACCAAAGGAAAA
CAGGTGACTGAACCAGGAATTATTTACGTTGTGGGCAGTTCGGCAATCAA
TGGATCGACACCAACTTAGCAGAATATATCTAGTCAAGCCTCTAACTGTT
GCTTTCACATCACCAATGTTTATTTCTTTGCTTTCAGGTACGACTTCACC
GGCACGTCCGAGAACGGCGTCAAGAACGGGCCGGGGCTTTTGCGCCTCCC
GTGCGGCGCGACCGTGGAGGGGACGTGGCTGATCGGCAACCTTATCGGCA
ACTCCAAGTTCTCGTTCCCGCCAAACTCCGAGTGGAATGACCCTCGGTAC
TGA
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Coding sequence (CDS) from alignment at C-linearis_contig110:230127..233329+

>mRNA_C-linearis_contig110.1455.1 ID=mRNA_C-linearis_contig110.1455.1|Name=mRNA_C-linearis_contig110.1455.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at C-linearis_contig110:230127..233329+ (Chordaria linearis ClinC8C monoicous)
CACTCAAAGGGTACTCTGACGTACAATAACGGGGCTACCTACAGTGGATC
ATGGGTGAATGACCACTCAAAGGGTACTCTGACGTACAATAACGGGGCTA
CCTACAGTGGATCATGGGTGAATGACGCCGGCATGGCGTGCGGTACCGGC
ACGCAGACGTTCGGAAACGGTGATCACTACGAAGGAGGGTGGAAAGACGG
CATGATGAGCGGGCAGGCCGGCATGGCGTGCGGTACCGGCACGCAGACGT
TCGGAAACGGTGATCACTACGAAGGAGGGTGGAAAGACGGCATGATGAGC
GGGCAGGGAACCTACACGTATGCCAACGGGTATGTGTACGAGGGTGAATG
GGAGAGGGACGACAAGAACGGGAAGGGGCGTCAAGCTTTCGCCGGCGTTG
GGGGAGGGGGAGAAGAGCCGGAGAAGGTGGCGGCGGCGGAAGGGGTCGAC
TTGTACGAGGGCCAGTGGAAGGACGGAAATCACCATGGACAAGGGAACCT
ACACGTATGCCAACGGGTATGTGTACGAGGGTGAATGGGAGAGGGACGAC
AAGAACGGGAAGGGGCGTCAAGCTTTCGCCGGCGTTGGGGGAGGGGGAGA
AGAGCCGGAGAAGGTGGCGGCGGCGGAAGGGGTCGACTTGTACGAGGGCC
AGTGGAAGGACGGAAATCACCATGGACAAGGGGAGTGCCACTTTGAAAAT
GGCGATGTCTACGTTGGCTCATGGGTCGACCATCGTATGGAGGGAAAGGG
GAAGATGGTGTACACCAACGGTGGCGGAGAGTACGAAGGGGAGTGCCACT
TTGAAAATGGCGATGTCTACGTTGGCTCATGGGTCGACCATCGTATGGAG
GGAAAGGGGAAGATGGTGTACACCAACGGTGGCGGAGAGTACGAAGGCGA
GTTTCGGGGCGACGCTAGACACGGCCAGGGCGTCTACCGCAGCTCTAGCC
CCCCCTACACCTACGAGGGAGCTTGGGCCGGAGACCTCCAACACGGCTTC
GGAAAGCTCAGCAGCAAGGATGAGGGCGCGTACGAAGGCTTCTTCAAGAG
AGGCGAGTTTCGGGGCGACGCTAGACACGGCCAGGGCGTCTACCGCAGCT
CTAGCCCCCCCTACACCTACGAGGGAGCTTGGGCCGGAGACCTCCAACAC
GGCTTCGGAAAGCTCAGCAGCAAGGATGAGGGCGCGTACGAAGGCTTCTT
CAAGAGAGGCACGTGGAAGGACGGGCACCTCTCGGGCCACGCCATGGTTC
GGTACAAGACCGGCGATCGGTACACTGGGGGCTCCGAGAAAGGTCTGAGG
AGCGGCAAGGGAACGATGTTTTCCGTCAAGACAGGGCACGTGGAAGGACG
GGCACCTCTCGGGCCACGCCATGGTTCGGTACAAGACCGGCGATCGGTAC
ACTGGGGGCTCCGAGAAAGGTCTGAGGAGCGGCAAGGGAACGATGTTTTC
CGTCAAGACAGGGTACGACTTCACCGGCACGTCCGAGAACGGCGTCAAGA
ACGGGCCGGGGCTTTTGCGCCTCCCGTGCGGCGCGACCGTGGAGGGGACG
TGGCTGATCGGCAACCTTATCGGCAACTCCAAGTTCTCGTTCCCGCCAAA
CTCCGAGTGGAATGACCCTCGGTACTGAGTACGACTTCACCGGCACGTCC
GAGAACGGCGTCAAGAACGGGCCGGGGCTTTTGCGCCTCCCGTGCGGCGC
GACCGTGGAGGGGACGTGGCTGATCGGCAACCTTATCGGCAACTCCAAGT
TCTCGTTCCCGCCAAACTCCGAGTGGAATGACCCTCGGTACTGA
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