mRNA_C-linearis_contig110.1453.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 340 bits (872), Expect = 5.300e-107 Identity = 168/223 (75.34%), Postives = 190/223 (85.20%), Query Frame = 3
Query: 150 KKAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPK------SFGFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
KKA ISK+V+DRLADDLLEG GF+AASKSL Y+A+YF+ +RSYVSLA R +++ +G++ + DLG+IPK GF PPSAHYL D+WHK FYE PVVQ GCSWTREEYLQ RAQL+DG LAGDASFKYAKVIRLS GADGTRARPV+GIFTIMNEYDQVVFSKAM TASVHDLKNDLKMMFVKRFLGHGFKLPV+FY+DECC+DRQLLLTMF+
Sbjct: 135 KKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMW-PNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPVHGIFTIMNEYDQVVFSKAMTTASVHDLKNDLKMMFVKRFLGHGFKLPVIFYSDECCDDRQLLLTMFK 356
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE) HSP 1 Score: 219 bits (557), Expect = 2.340e-62 Identity = 116/197 (58.88%), Postives = 138/197 (70.05%), Query Frame = 3
Query: 228 SKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPK------SFGFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
SKSL +AYN++YFS +RSYVSLAK+ I+K RG+YGQ ++ V PK G+ PSAH+L D+W+KWFYE PVVQ+ KYAKVIRL+TG DGTRA PVYGIFTIMNEYDQVVFSKAM+TASV+DLKND KM+FVK +GHGF LPV+FY+D CCEDRQLLL MF+
Sbjct: 297 SKSLAQAYNSRYFSQMRSYVSLAKKGISKYRGLYGQQSNPDV-PKFAGTGDPSGYNSSSPSAHHLADIWNKWFYETPVVQLVMLP------------------------SKYAKVIRLATGEDGTRALPVYGIFTIMNEYDQVVFSKAMSTASVYDLKNDPKMLFVKCVVGHGFTLPVIFYSDGCCEDRQLLLWMFK 468
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE) HSP 1 Score: 204 bits (518), Expect = 1.520e-60 Identity = 99/137 (72.26%), Postives = 114/137 (83.21%), Query Frame = 3
Query: 369 GFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREE------YLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDE 761
G ++ PSAHYL D+WHKWFYE+P+V+ +W + YLQ RAQL+DGRLLAGDASFKYAKVIRL TG DGTRARPVYGIFTIMNEYDQVVFSKAM TASVHDLK+DLKMMFV+RF+GHGFKLPV+ +T +
Sbjct: 6 GLNRRHPSAHYLGDIWHKWFYEMPMVK----TWVTTDALGHVNYLQRRAQLVDGRLLAGDASFKYAKVIRLPTGPDGTRARPVYGIFTIMNEYDQVVFSKAMKTASVHDLKSDLKMMFVQRFVGHGFKLPVILFTVD 138
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: D7FVB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB4_ECTSI) HSP 1 Score: 196 bits (497), Expect = 1.050e-58 Identity = 101/216 (46.76%), Postives = 143/216 (66.20%), Query Frame = 3
Query: 174 VLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
++DRLADDL+ GKGFSAA+K++ +A+ K+ Y SL R GI+ + A+L P+ FG + PS HYLRDVW +F ++PV++V G SWT EEY Q DG +L GDASFK+AK+IRL A R+RPVYG+FT+ NEY+QVV+ + M T ++ +L +LK+ F+ RF+ +GFK+P ++ TD+CC+DRQLL +FR
Sbjct: 1 MVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVNSRRTSS-GIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEVDGVSWTLEEYQHRLMQRWDGEVLGGDASFKFAKIIRLGARAGEERSRPVYGLFTVFNEYEQVVWQRPMKTGALSELVEELKLFFM-RFVRNGFKVPTLWNTDDCCDDRQLLQRVFR 213
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5K4A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A9_9PHAE) HSP 1 Score: 175 bits (443), Expect = 7.910e-50 Identity = 95/224 (42.41%), Postives = 139/224 (62.05%), Query Frame = 3
Query: 150 KKAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
+++GI ++ RLADDL+ GKGFSAA+K++ +A+ K+ Y SL R GI+ + A+L P+ FG + PS HYLRDV +F ++PV++V WT EEY Q DG +L GDASFK+AK+IRL A R RPVYG FT+ NE +QVV+ + M T ++ +L +LK++F+ RF+ + FK+P ++ T +CC+DRQLL + R
Sbjct: 60 ERSGIEICMVGRLADDLVRGKGFSAAAKNILQAHTTKFMVDQLKYTSLVNTRRTSS-GIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNECEQVVWQRLMKTGALSELAEELKLLFM-RFVRNDFKVPTLWNTHDCCDDRQLLQRILR 280
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5JYR4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR4_9PHAE) HSP 1 Score: 171 bits (433), Expect = 9.150e-46 Identity = 78/97 (80.41%), Postives = 91/97 (93.81%), Query Frame = 3
Query: 510 GRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
G + GDASFKYAKVIRL+TG DGTRARPVY IFTIMNEY+QV+FSK M+TASV+DLKNDLKM+FVKRF+GHGFKLPV+FY+D+CCEDRQLLL+MF+
Sbjct: 10 GHVKTGDASFKYAKVIRLATGEDGTRARPVYEIFTIMNEYNQVIFSKVMSTASVYDLKNDLKMLFVKRFVGHGFKLPVIFYSDDCCEDRQLLLSMFK 106
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.070e-45 Identity = 99/264 (37.50%), Postives = 141/264 (53.41%), Query Frame = 3
Query: 30 RGKQDEEGRGSYNSDFQRVGSCCFGEDG*LCVERISVCSDKKAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
+GKQ+ E + + F + C + K++GI +++RLADDL+ GK FSAA+K++ +A+ K+ Y SL R GI+ + A+L P+ FG + PS HYLRDVW +F ++PV++V WT EEY Q DG +L GDASFK+AK+IRL A R RPVYG FT+ NEY+Q +F RF+ +GFK+P ++ TD+CC+DRQLL +FR
Sbjct: 129 KGKQEAE---KHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIF-RSANLANTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFPKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNEYEQ---------------------LFFMRFVRNGFKVPTLWNTDDCCDDRQLLQRIFR 366
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE) HSP 1 Score: 171 bits (434), Expect = 7.960e-45 Identity = 98/250 (39.20%), Postives = 142/250 (56.80%), Query Frame = 3
Query: 150 KKAGISKNVLDRLADDLLEGKGFSAASKSLTKA--------------------------YNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
K++GI ++DRLADDL+ GKGFSAA+K++ + K+ Y SL R GI+ + A+ P+ FG + PS HYLRDVW ++ ++PV++V G WT EEY Q DG +L+GDASFK+AK+IRL A R++PVYG+FT+ NEY+QVV+ + M T ++ +L +LK F RF+ +GFK+ ++ TD+CC+DRQLL +FR
Sbjct: 200 KRSGIEIRMVDRLADDLVHGKGFSAAAKNICQVNVHFLICSVLKITXXXXXXXXXXXXXXTTKFMVDQLKYTSLVNSRRTSS-GIF-RSANHAKTPERFGSFDDSTKYGGAVPSEHYLRDVWWLYYSKLPVLEVDGVGWTLEEYQHRLMQRWDGEVLSGDASFKFAKIIRLGARAGEERSKPVYGLFTVFNEYEQVVWQRPMKTGALSELVEELKPFF-NRFVRNGFKVFTLWNTDDCCDDRQLLQRVFR 446
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5KE68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE68_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.510e-42 Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 3
Query: 153 KAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQV 638
++GI ++DRLADDL+ GKGFSAA+K + +A+ K+ + YVSLA R + + ++G +P FG + PS HYLRDVW +F E+PV++V G WTRE+YL Q DG +LAGDASFK+AK+IRL A G R RPV+GIFT+ NEY+QV
Sbjct: 69 RSGIDIRLVDRLADDLVHGKGFSAAAKYIRQAHTTKFMAFQLKYVSLADARRSSRVSLFGA----APVPVKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEVKGVKWTREDYLHCVHQRWDGTVLAGDASFKFAKIIRLGATAHGERTRPVHGIFTVFNEYEQV 233
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE) HSP 1 Score: 157 bits (397), Expect = 6.500e-42 Identity = 89/209 (42.58%), Postives = 128/209 (61.24%), Query Frame = 3
Query: 150 KKAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYT 755
K++GI ++DRLADDL+ GKGFSAA+K++ +A+ K+ Y SL R GI+ + A+L P+ FG + PS HYLRDV +F ++PV++V WT EEY Q DG +L GD+SFK+AK+IRL A R RPVYG FT+ NE QVV+ + M T ++ +L +LK+ F+ RF+ +GFK+P ++ T
Sbjct: 200 KRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDSSFKFAKIIRLRAKAGEERTRPVYGSFTVFNECKQVVWQRPMNTGALSELAEELKLFFM-RFVRNGFKVPTLWNT 405 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig110.1453.1 >prot_C-linearis_contig110.1453.1 ID=prot_C-linearis_contig110.1453.1|Name=mRNA_C-linearis_contig110.1453.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp MRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVback to top mRNA from alignment at C-linearis_contig110:188307..189569+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig110.1453.1 ID=mRNA_C-linearis_contig110.1453.1|Name=mRNA_C-linearis_contig110.1453.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1263bp|location=Sequence derived from alignment at C-linearis_contig110:188307..189569+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig110:188307..189569+ >mRNA_C-linearis_contig110.1453.1 ID=mRNA_C-linearis_contig110.1453.1|Name=mRNA_C-linearis_contig110.1453.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at C-linearis_contig110:188307..189569+ (Chordaria linearis ClinC8C monoicous)back to top |