mRNA_C-linearis_contig110.1453.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1453.1
Unique NamemRNA_C-linearis_contig110.1453.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 5.300e-107
Identity = 168/223 (75.34%), Postives = 190/223 (85.20%), Query Frame = 3
Query:  150 KKAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPK------SFGFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
            KKA ISK+V+DRLADDLLEG GF+AASKSL   Y+A+YF+ +RSYVSLA R +++ +G++  + DLG+IPK        GF   PPSAHYL D+WHK FYE PVVQ  GCSWTREEYLQ RAQL+DG  LAGDASFKYAKVIRLS GADGTRARPV+GIFTIMNEYDQVVFSKAM TASVHDLKNDLKMMFVKRFLGHGFKLPV+FY+DECC+DRQLLLTMF+
Sbjct:  135 KKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMW-PNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPVHGIFTIMNEYDQVVFSKAMTTASVHDLKNDLKMMFVKRFLGHGFKLPVIFYSDECCDDRQLLLTMFK 356          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.340e-62
Identity = 116/197 (58.88%), Postives = 138/197 (70.05%), Query Frame = 3
Query:  228 SKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPK------SFGFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
            SKSL +AYN++YFS +RSYVSLAK+ I+K RG+YGQ ++  V PK        G+    PSAH+L D+W+KWFYE PVVQ+                             KYAKVIRL+TG DGTRA PVYGIFTIMNEYDQVVFSKAM+TASV+DLKND KM+FVK  +GHGF LPV+FY+D CCEDRQLLL MF+
Sbjct:  297 SKSLAQAYNSRYFSQMRSYVSLAKKGISKYRGLYGQQSNPDV-PKFAGTGDPSGYNSSSPSAHHLADIWNKWFYETPVVQLVMLP------------------------SKYAKVIRLATGEDGTRALPVYGIFTIMNEYDQVVFSKAMSTASVYDLKNDPKMLFVKCVVGHGFTLPVIFYSDGCCEDRQLLLWMFK 468          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.520e-60
Identity = 99/137 (72.26%), Postives = 114/137 (83.21%), Query Frame = 3
Query:  369 GFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREE------YLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDE 761
            G  ++ PSAHYL D+WHKWFYE+P+V+    +W   +      YLQ RAQL+DGRLLAGDASFKYAKVIRL TG DGTRARPVYGIFTIMNEYDQVVFSKAM TASVHDLK+DLKMMFV+RF+GHGFKLPV+ +T +
Sbjct:    6 GLNRRHPSAHYLGDIWHKWFYEMPMVK----TWVTTDALGHVNYLQRRAQLVDGRLLAGDASFKYAKVIRLPTGPDGTRARPVYGIFTIMNEYDQVVFSKAMKTASVHDLKSDLKMMFVQRFVGHGFKLPVILFTVD 138          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: D7FVB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB4_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 1.050e-58
Identity = 101/216 (46.76%), Postives = 143/216 (66.20%), Query Frame = 3
Query:  174 VLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
            ++DRLADDL+ GKGFSAA+K++ +A+  K+      Y SL   R     GI+ + A+L   P+ FG       +    PS HYLRDVW  +F ++PV++V G SWT EEY     Q  DG +L GDASFK+AK+IRL   A   R+RPVYG+FT+ NEY+QVV+ + M T ++ +L  +LK+ F+ RF+ +GFK+P ++ TD+CC+DRQLL  +FR
Sbjct:    1 MVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVNSRRTSS-GIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEVDGVSWTLEEYQHRLMQRWDGEVLGGDASFKFAKIIRLGARAGEERSRPVYGLFTVFNEYEQVVWQRPMKTGALSELVEELKLFFM-RFVRNGFKVPTLWNTDDCCDDRQLLQRVFR 213          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5K4A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A9_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 7.910e-50
Identity = 95/224 (42.41%), Postives = 139/224 (62.05%), Query Frame = 3
Query:  150 KKAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
            +++GI   ++ RLADDL+ GKGFSAA+K++ +A+  K+      Y SL   R     GI+ + A+L   P+ FG       +    PS HYLRDV   +F ++PV++V    WT EEY     Q  DG +L GDASFK+AK+IRL   A   R RPVYG FT+ NE +QVV+ + M T ++ +L  +LK++F+ RF+ + FK+P ++ T +CC+DRQLL  + R
Sbjct:   60 ERSGIEICMVGRLADDLVRGKGFSAAAKNILQAHTTKFMVDQLKYTSLVNTRRTSS-GIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNECEQVVWQRLMKTGALSELAEELKLLFM-RFVRNDFKVPTLWNTHDCCDDRQLLQRILR 280          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5JYR4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR4_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 9.150e-46
Identity = 78/97 (80.41%), Postives = 91/97 (93.81%), Query Frame = 3
Query:  510 GRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
            G +  GDASFKYAKVIRL+TG DGTRARPVY IFTIMNEY+QV+FSK M+TASV+DLKNDLKM+FVKRF+GHGFKLPV+FY+D+CCEDRQLLL+MF+
Sbjct:   10 GHVKTGDASFKYAKVIRLATGEDGTRARPVYEIFTIMNEYNQVIFSKVMSTASVYDLKNDLKMLFVKRFVGHGFKLPVIFYSDDCCEDRQLLLSMFK 106          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.070e-45
Identity = 99/264 (37.50%), Postives = 141/264 (53.41%), Query Frame = 3
Query:   30 RGKQDEEGRGSYNSDFQRVGSCCFGEDG*LCVERISVCSDKKAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
            +GKQ+ E    + + F    + C         +       K++GI   +++RLADDL+ GK FSAA+K++ +A+  K+      Y SL   R     GI+ + A+L   P+ FG       +    PS HYLRDVW  +F ++PV++V    WT EEY     Q  DG +L GDASFK+AK+IRL   A   R RPVYG FT+ NEY+Q                     +F  RF+ +GFK+P ++ TD+CC+DRQLL  +FR
Sbjct:  129 KGKQEAE---KHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIF-RSANLANTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFPKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNEYEQ---------------------LFFMRFVRNGFKVPTLWNTDDCCDDRQLLQRIFR 366          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 7.960e-45
Identity = 98/250 (39.20%), Postives = 142/250 (56.80%), Query Frame = 3
Query:  150 KKAGISKNVLDRLADDLLEGKGFSAASKSLTKA--------------------------YNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFR 800
            K++GI   ++DRLADDL+ GKGFSAA+K++ +                              K+      Y SL   R     GI+ + A+    P+ FG       +    PS HYLRDVW  ++ ++PV++V G  WT EEY     Q  DG +L+GDASFK+AK+IRL   A   R++PVYG+FT+ NEY+QVV+ + M T ++ +L  +LK  F  RF+ +GFK+  ++ TD+CC+DRQLL  +FR
Sbjct:  200 KRSGIEIRMVDRLADDLVHGKGFSAAAKNICQVNVHFLICSVLKITXXXXXXXXXXXXXXTTKFMVDQLKYTSLVNSRRTSS-GIF-RSANHAKTPERFGSFDDSTKYGGAVPSEHYLRDVWWLYYSKLPVLEVDGVGWTLEEYQHRLMQRWDGEVLSGDASFKFAKIIRLGARAGEERSKPVYGLFTVFNEYEQVVWQRPMKTGALSELVEELKPFF-NRFVRNGFKVFTLWNTDDCCDDRQLLQRVFR 446          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5KE68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE68_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.510e-42
Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  153 KAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQV 638
            ++GI   ++DRLADDL+ GKGFSAA+K + +A+  K+ +    YVSLA  R + +  ++G       +P  FG       +    PS HYLRDVW  +F E+PV++V G  WTRE+YL    Q  DG +LAGDASFK+AK+IRL   A G R RPV+GIFT+ NEY+QV
Sbjct:   69 RSGIDIRLVDRLADDLVHGKGFSAAAKYIRQAHTTKFMAFQLKYVSLADARRSSRVSLFGA----APVPVKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEVKGVKWTREDYLHCVHQRWDGTVLAGDASFKFAKIIRLGATAHGERTRPVHGIFTVFNEYEQV 233          
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 6.500e-42
Identity = 89/209 (42.58%), Postives = 128/209 (61.24%), Query Frame = 3
Query:  150 KKAGISKNVLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYT 755
            K++GI   ++DRLADDL+ GKGFSAA+K++ +A+  K+      Y SL   R     GI+ + A+L   P+ FG       +    PS HYLRDV   +F ++PV++V    WT EEY     Q  DG +L GD+SFK+AK+IRL   A   R RPVYG FT+ NE  QVV+ + M T ++ +L  +LK+ F+ RF+ +GFK+P ++ T
Sbjct:  200 KRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDSSFKFAKIIRLRAKAGEERTRPVYGSFTVFNECKQVVWQRPMNTGALSELAEELKLFFM-RFVRNGFKVPTLWNT 405          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIV2_ECTSI5.300e-10775.343'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4D4_9PHAE2.340e-6258.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK3_9PHAE1.520e-6072.263'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FVB4_ECTSI1.050e-5846.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4A9_9PHAE7.910e-5042.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYR4_9PHAE9.150e-4680.413'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KDX0_9PHAE1.070e-4537.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG2_9PHAE7.960e-4539.203'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KE68_9PHAE1.510e-4247.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7G9_9PHAE6.500e-4242.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:188307..189569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue8.6e-48
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons5
Model size806
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1453.1prot_C-linearis_contig110.1453.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 188974..189569 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.2841856-UTR-C-linearis_contig110:188306..1886671622927475.2841856-UTR-C-linearis_contig110:188306..188667Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 188307..188667 +
1690879722.988834-UTR-C-linearis_contig110:188306..1886671690879722.988834-UTR-C-linearis_contig110:188306..188667Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 188307..188667 +
1622927475.2984374-UTR-C-linearis_contig110:188683..1887751622927475.2984374-UTR-C-linearis_contig110:188683..188775Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 188684..188775 +
1690879723.0020235-UTR-C-linearis_contig110:188683..1887751690879723.0020235-UTR-C-linearis_contig110:188683..188775Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 188684..188775 +
1622927475.3116117-UTR-C-linearis_contig110:188938..1889731622927475.3116117-UTR-C-linearis_contig110:188938..188973Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 188939..188973 +
1690879723.014164-UTR-C-linearis_contig110:188938..1889731690879723.014164-UTR-C-linearis_contig110:188938..188973Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 188939..188973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.3285487-CDS-C-linearis_contig110:188973..1891201622927475.3285487-CDS-C-linearis_contig110:188973..189120Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 188974..189120 +
1690879723.029078-CDS-C-linearis_contig110:188973..1891201690879723.029078-CDS-C-linearis_contig110:188973..189120Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 188974..189120 +
1622927475.345046-CDS-C-linearis_contig110:189268..1893891622927475.345046-CDS-C-linearis_contig110:189268..189389Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 189269..189389 +
1690879723.036962-CDS-C-linearis_contig110:189268..1893891690879723.036962-CDS-C-linearis_contig110:189268..189389Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 189269..189389 +
1622927475.3590944-CDS-C-linearis_contig110:189519..1895691622927475.3590944-CDS-C-linearis_contig110:189519..189569Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 189520..189569 +
1690879723.045064-CDS-C-linearis_contig110:189519..1895691690879723.045064-CDS-C-linearis_contig110:189519..189569Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 189520..189569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1453.1

>prot_C-linearis_contig110.1453.1 ID=prot_C-linearis_contig110.1453.1|Name=mRNA_C-linearis_contig110.1453.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp
MRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQV
VFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLL
TMFRR*
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mRNA from alignment at C-linearis_contig110:188307..189569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1453.1 ID=mRNA_C-linearis_contig110.1453.1|Name=mRNA_C-linearis_contig110.1453.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1263bp|location=Sequence derived from alignment at C-linearis_contig110:188307..189569+ (Chordaria linearis ClinC8C monoicous)
GGTCGCAGATATGAATGCAAGCGATGCGCCGAGGAAAACAAGATGAGGAA GGAAGAGGATCGTACAACTCAGACTTTCAACGCGTGGGATCCTGCTGTTT TGGCGAAGATGGATGACTTTGTGTCGAAAGAATTTCCGTTTGTTCTGACA AAAAAGCGGGGATCAGTAAGAACGTACTTGACCGCTTAGCGGACGACCTT CTTGAGGGCAAGGGTTTTTCGGCGGCTTCAAAATCGCTTACGAAGGCGTA CAATGCCAAGTATTTCAGTCACGTCCGGTCGTACGTGTCGCTAGCCAAAC GCCGCATTGCTAAGCAGAGGGGGATTTATGGGCAACATGCGGACCTCGGC GTGATCCCAAAGTTCTCCCCATAGGAGATCCTTTGGGTTTCCACAGCAGC CCCCTTCGGCTCACTACCTGAGGGACGTTTGGCACAAGTGGTTCTACGAA ATCCCGGTTGTGCAGGTATGTGCATGAAGGACACGAAAGGGTGTGGGTTT TCAGAATGTTGTACTACTCAGGCAAGCAAAGAGAACAACATTTCGCAACC GTATGTGTAACCCTGTAATCGACCTTGGCCCGGTTTGCTTCATATTTTCT CTTTCCTCTGGACCATAAAAATGACCAGGAAGACGGGTGCTCCTGGACAC GTGAAGAGTATCTTCAGATGCGAGCTCAGCTGATAGATGGTCGTTTGCTA GCGGGAGATGCCTCTTTCAAGTATGCCAAGGTCATCCGGTTATCTACTGG CGCAGACGGGACCCGCGCACGGCCCGTGTACGGAATTTTTACCATCATGA ACGAGTACGACCAGGTGAGGAAACCATGCTGTTAAAAGCTGCTTGCTGGT TGTTTGCGCCGTGTTTTGTACACGCACCGCATCACATGCTCGTACAGGCC TCGTTTGTCAAACTCGTGGAAGGCGTCAAAATAAATATCCTCCCACGCGT TCATTCTCACAGGTTGTGTTTTCGAAGGCCATGGCCACTGCATCGGTGCA CGACCTGAAGAACGACTTGAAGATGATGTTCGTCAAACGTTTCCTCGGCC ATGGTTTCAAGCTCCCGGTCATGTTCTACACCGGTGCGTTGAATTATTGT CGGGTGCCTTGGGTAAAGGTCACCTTTCCTTCCGAGTGTATTTGATGAGG TTAGTGGAATTTTATCGAATAAGACGGATGCTTAACACCGTTTCATTTGA ATTTCTTGCCCAGATGAATGCTGCGAGGATCGACAACTGCTGCTTACGAT GTTCAGGAGATAG
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Coding sequence (CDS) from alignment at C-linearis_contig110:188307..189569+

>mRNA_C-linearis_contig110.1453.1 ID=mRNA_C-linearis_contig110.1453.1|Name=mRNA_C-linearis_contig110.1453.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at C-linearis_contig110:188307..189569+ (Chordaria linearis ClinC8C monoicous)
ATGCGAGCTCAGCTGATAGATGGTCGTTTGCTAGCGGGAGATGCCTCTTT
CAAGTATGCCAAGGTCATCCGGTTATCTACTGGCGCAGACGGGACCCGCG
CACGGCCCGTGTACGGAATTTTTACCATCATGAACGAGTACGACCAGATG
CGAGCTCAGCTGATAGATGGTCGTTTGCTAGCGGGAGATGCCTCTTTCAA
GTATGCCAAGGTCATCCGGTTATCTACTGGCGCAGACGGGACCCGCGCAC
GGCCCGTGTACGGAATTTTTACCATCATGAACGAGTACGACCAGGTTGTG
TTTTCGAAGGCCATGGCCACTGCATCGGTGCACGACCTGAAGAACGACTT
GAAGATGATGTTCGTCAAACGTTTCCTCGGCCATGGTTTCAAGCTCCCGG
TCATGTTCTACACCGGTTGTGTTTTCGAAGGCCATGGCCACTGCATCGGT
GCACGACCTGAAGAACGACTTGAAGATGATGTTCGTCAAACGTTTCCTCG
GCCATGGTTTCAAGCTCCCGGTCATGTTCTACACCGATGAATGCTGCGAG
GATCGACAACTGCTGCTTACGATGTTCAGGAGATAGATGAATGCTGCGAG
GATCGACAACTGCTGCTTACGATGTTCAGGAGATAG
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