mRNA_C-linearis_contig110.1442.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1442.1
Unique NamemRNA_C-linearis_contig110.1442.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig110.1442.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 5.380e-58
Identity = 127/227 (55.95%), Postives = 147/227 (64.76%), Query Frame = 3 
Query:    3 PENWMHSASLVFAIFGRPAGENEDVDLNLKMNGGLTDESSTKKKRKDIDSAPPTPGG-----DSASP-LSTKGLRLMNGAGGKQSRAQTKQVKHEVNAENKKLKAVEADAALKRKALEIMSAAPVESKSTLEMAASVVALTAAVVRKDLRDEEEVARRRWGERAAAMEKKLALLERRGKGETPEAQRLEQDLMKLYDNPVVTPLPAVAPLVGTSASATPSLARGDGE 665
            PE+W+H ASLVFAIFGRPAG NEDVDL LKM  G    S TK                    D + P LSTKGL+LMNGAGGK SRA+ K + HEVNAENKKLK  EADA LKR+ALE +S  P +SKS+LE+  SV ALT AVV K+L D+E+  R RW ER  AME KLAL  + GKG T EAQ L+++L+  YDNPVV PL   AP          S+A GDGE
Sbjct:  287 PEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSGRP--SGTKXXXXXXXXXXXXXXXXXXXEDESKPCLSTKGLKLMNGAGGKHSRAEMKTLAHEVNAENKKLKGAEADAVLKRRALEALSTPPEDSKSSLELVESVKALTRAVVSKELLDQEQAERARWNERVRAMESKLALWGKMGKGSTAEAQALQEELLHAYDNPVVAPLSVAAP----------SVAEGDGE 501
[Close]
BLAST of mRNA_C-linearis_contig110.1442.1 vs. uniprot
Match: A0A6H5KSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.980e-48
Identity = 111/220 (50.45%), Postives = 137/220 (62.27%), Query Frame = 3 
Query:    3 PENWMHSASLVFAIFGRPAGENEDVDLNLKMNGGLTDESSTKKKRKDIDSAPPTPGGDSASPLSTKGLRLMNGAGGKQSRAQTKQVKHEVNAENKKLKAVEADAALKRKALEIMSAAPVESKSTLEMAASVVALTAAVVRKDLRDEEEVARRRWGERAAAMEKKLALLERRGKGETPEAQRLEQDLMKLYDNPVVTPLPAVAPLVGTSASATPSLARGDG 662
            P++W+H AS VFA       E E V L + M      E   +++R               S L  +GL+L NGAGGK SRA+ K + H VNAENKKLK+ E DAAL+R+A E +SA P +SKST E+  SV ALT AVV K+L D++   R RW E   AMEKKL L E+RGKG TPEAQ LE+ L+ +YD PVV PLP  AP + +  SATPSLA GDG
Sbjct:  169 PDHWLHPASFVFA-----GNEKEGVGLGICMPVAGRWERRERRER---------------SFLEHEGLKLKNGAGGKHSRAEMKALAHGVNAENKKLKSAETDAALERRAFEALSAPPEDSKSTKELVESVKALTRAVVSKELLDQDAAERARWKENVGAMEKKLELYEKRGKGNTPEAQDLEKALLAMYDAPVVAPLPVAAPTLDSPTSATPSLAGGDG 368
[Close]
BLAST of mRNA_C-linearis_contig110.1442.1 vs. uniprot
Match: A0A6H5K9E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.090e-8
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 3 
Query:    3 PENWMHSASLVFAIFGRPAGENEDVDLNLKMNGGLTDESSTKKKRKDIDSAPPTPG--------GDSASPLSTKGLRLMNGAGG 230
            P  W+HS SLVFA+FGRPAG++EDVDL + M+ G        K+ +   SA PTP           S  PL  +GL+ M+GAGG
Sbjct:  198 PSGWVHSYSLVFALFGRPAGKHEDVDLKVAMSTGPG------KQGRRAHSASPTPSRTSDEDTRDTSNDPLGKRGLQTMDGAGG 275
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE5.380e-5855.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSZ3_9PHAE1.980e-4850.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9E6_9PHAE1.090e-845.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:107545..108209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size665
Cds size651
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.8166344-UTR-C-linearis_contig110:107544..1075581622927472.8166344-UTR-C-linearis_contig110:107544..107558Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 107545..107558 +
1690879721.3307192-UTR-C-linearis_contig110:107544..1075581690879721.3307192-UTR-C-linearis_contig110:107544..107558Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 107545..107558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.8287826-CDS-C-linearis_contig110:107558..1082091622927472.8287826-CDS-C-linearis_contig110:107558..108209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 107559..108209 +
1690879721.3426788-CDS-C-linearis_contig110:107558..1082091690879721.3426788-CDS-C-linearis_contig110:107558..108209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 107559..108209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1442.1prot_C-linearis_contig110.1442.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 107559..108209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1442.1

>prot_C-linearis_contig110.1442.1 ID=prot_C-linearis_contig110.1442.1|Name=mRNA_C-linearis_contig110.1442.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=217bp
MHSASLVFAIFGRPAGENEDVDLNLKMNGGLTDESSTKKKRKDIDSAPPT
PGGDSASPLSTKGLRLMNGAGGKQSRAQTKQVKHEVNAENKKLKAVEADA
ALKRKALEIMSAAPVESKSTLEMAASVVALTAAVVRKDLRDEEEVARRRW
GERAAAMEKKLALLERRGKGETPEAQRLEQDLMKLYDNPVVTPLPAVAPL
VGTSASATPSLARGDGE
back to top

mRNA from alignment at C-linearis_contig110:107545..108209+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1442.1 ID=mRNA_C-linearis_contig110.1442.1|Name=mRNA_C-linearis_contig110.1442.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=665bp|location=Sequence derived from alignment at C-linearis_contig110:107545..108209+ (Chordaria linearis ClinC8C monoicous)
AGCCCGAAAACTGGATGCACTCGGCTTCCCTTGTTTTCGCTATTTTCGGG
AGGCCTGCTGGTGAGAACGAGGATGTAGACCTGAATCTCAAAATGAATGG
TGGTTTGACTGATGAGAGCTCCACCAAGAAGAAAAGAAAAGATATCGATT
CTGCGCCTCCGACCCCGGGAGGCGATAGCGCCTCTCCCTTGAGCACGAAA
GGCCTAAGACTTATGAATGGGGCCGGCGGCAAGCAAAGCCGAGCGCAAAC
GAAGCAAGTGAAACACGAGGTCAACGCCGAGAACAAGAAACTCAAGGCTG
TAGAAGCCGACGCTGCTCTGAAGCGGAAAGCCTTGGAAATCATGTCGGCC
GCCCCGGTAGAATCTAAGAGCACGCTAGAAATGGCCGCAAGCGTCGTAGC
GCTGACTGCGGCTGTTGTGCGCAAGGACCTGCGTGACGAAGAGGAAGTAG
CGCGTAGGCGTTGGGGGGAGAGGGCCGCGGCGATGGAGAAAAAACTCGCT
TTGTTGGAGAGAAGGGGGAAGGGGGAGACGCCGGAGGCACAGCGTCTGGA
ACAGGATCTCATGAAGTTGTACGATAACCCCGTTGTCACCCCTCTGCCTG
CCGTAGCCCCGCTCGTAGGCACTTCCGCTTCTGCAACTCCAAGCTTGGCC
AGAGGTGATGGAGAA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig110:107545..108209+

>mRNA_C-linearis_contig110.1442.1 ID=mRNA_C-linearis_contig110.1442.1|Name=mRNA_C-linearis_contig110.1442.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at C-linearis_contig110:107545..108209+ (Chordaria linearis ClinC8C monoicous)
ATGCACTCGGCTTCCCTTGTTTTCGCTATTTTCGGGAGGCCTGCTGGTGA
GAACGAGGATGTAGACCTGAATCTCAAAATGAATGGTGGTTTGACTGATG
AGAGCTCCACCAAGAAGAAAAGAAAAGATATCGATTCTGCGCCTCCGACC
CCGGGAGGCGATAGCGCCTCTCCCTTGAGCACGAAAGGCCTAAGACTTAT
GAATGGGGCCGGCGGCAAGCAAAGCCGAGCGCAAACGAAGCAAGTGAAAC
ACGAGGTCAACGCCGAGAACAAGAAACTCAAGGCTGTAGAAGCCGACGCT
GCTCTGAAGCGGAAAGCCTTGGAAATCATGTCGGCCGCCCCGGTAGAATC
TAAGAGCACGCTAGAAATGGCCGCAAGCGTCGTAGCGCTGACTGCGGCTG
TTGTGCGCAAGGACCTGCGTGACGAAGAGGAAGTAGCGCGTAGGCGTTGG
GGGGAGAGGGCCGCGGCGATGGAGAAAAAACTCGCTTTGTTGGAGAGAAG
GGGGAAGGGGGAGACGCCGGAGGCACAGCGTCTGGAACAGGATCTCATGA
AGTTGTACGATAACCCCGTTGTCACCCCTCTGCCTGCCGTAGCCCCGCTC
GTAGGCACTTCCGCTTCTGCAACTCCAAGCTTGGCCAGAGGTGATGGAGA
AATGCACTCGGCTTCCCTTGTTTTCGCTATTTTCGGGAGGCCTGCTGGTG
AGAACGAGGATGTAGACCTGAATCTCAAAATGAATGGTGGTTTGACTGAT
GAGAGCTCCACCAAGAAGAAAAGAAAAGATATCGATTCTGCGCCTCCGAC
CCCGGGAGGCGATAGCGCCTCTCCCTTGAGCACGAAAGGCCTAAGACTTA
TGAATGGGGCCGGCGGCAAGCAAAGCCGAGCGCAAACGAAGCAAGTGAAA
CACGAGGTCAACGCCGAGAACAAGAAACTCAAGGCTGTAGAAGCCGACGC
TGCTCTGAAGCGGAAAGCCTTGGAAATCATGTCGGCCGCCCCGGTAGAAT
CTAAGAGCACGCTAGAAATGGCCGCAAGCGTCGTAGCGCTGACTGCGGCT
GTTGTGCGCAAGGACCTGCGTGACGAAGAGGAAGTAGCGCGTAGGCGTTG
GGGGGAGAGGGCCGCGGCGATGGAGAAAAAACTCGCTTTGTTGGAGAGAA
GGGGGAAGGGGGAGACGCCGGAGGCACAGCGTCTGGAACAGGATCTCATG
AAGTTGTACGATAACCCCGTTGTCACCCCTCTGCCTGCCGTAGCCCCGCT
CGTAGGCACTTCCGCTTCTGCAACTCCAAGCTTGGCCAGAGGTGATGGAG
AA
back to top