mRNA_C-linearis_contig110.1434.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1434.1
Unique NamemRNA_C-linearis_contig110.1434.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: D7G0V1_ECTSI (Transcription initiation factor TFIID n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0V1_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 3.670e-104
Identity = 163/208 (78.37%), Postives = 177/208 (85.10%), Query Frame = 3
Query:   84 GLAHPQAPVQVSPIVPQNNHQPQPQVRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKEPE 707
            G AH  A    +   P  N   QP VRVVLQNVTAT+NMRIT+D SSLANK+R+AEYNPKKLPAVVMRIREPQATGL+F +GKVVITGA GVEAAREAA +FV VVE  GL P TNP  LRF VQNMVATFE+DAPISLELMAY +ARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTG K EDHLNEALV+LLPILNQY++P+
Sbjct:    6 GYAHAPAAQPAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPD 213          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A7S3JUH6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUH6_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.500e-46
Identity = 102/223 (45.74%), Postives = 139/223 (62.33%), Query Frame = 3
Query:   63 EDMASLPGLAHP--QAPVQVS--PIVPQNNHQPQPQ------VRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
            EDM +   LA    QA  +V+   +V   +  PQP+       R+V+QNV AT N+RI +D  +LA   RNAEYNPKK  AV+MR+REP+ TGL+F TGK+V TGA     +R  A KF  V++  G     NP+   FT+QNMVAT +++ PI LE + Y+ +++C YEPELFPG IY+      V  +F SGR+V+TGAK   HL  A  K+ P+L Q+K+
Sbjct:   18 EDMTAEEALAEESRQAVTEVTRQQLVATASPSPQPEWSHTSGTRIVIQNVVATANLRIAIDLKTLATSARNAEYNPKKFAAVIMRLREPRCTGLIFSTGKMVCTGAKSEHESRMGARKFAAVLDKIGW----NPKFTEFTIQNMVATADVNFPIRLEQLVYSHSKFCSYEPELFPGCIYRLVVPKTVILLFVSGRMVITGAKSVSHLQTAFDKIFPVLLQFKK 236          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: F0YMS8_AURAN (Uncharacterized protein GTF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMS8_AURAN)

HSP 1 Score: 170 bits (431), Expect = 2.660e-46
Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  171 LQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
            +QNV AT+N+RI++D  +LA   RNAEYNPKK  AV+MR+REP+ T LVF TGK+VITGA   +AAR  A KF  ++   G +P        F VQNMVAT +   PI LE + Y  A++  YEPELFPGLIY+      V  +F SGR+VLTG K   HL  A  K+ P+L ++K+
Sbjct:   50 VQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKFG----EFKVQNMVATSDAGFPIRLEALVYAHAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKK 222          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A9CTI1_ENTBH (Transcription initiation factor TFIID n=1 Tax=Enterocytozoon bieneusi (strain H348) TaxID=481877 RepID=A9CTI1_ENTBH)

HSP 1 Score: 164 bits (414), Expect = 2.580e-44
Identity = 81/178 (45.51%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  168 VLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
            +LQNV AT+N+   +D  S+A   RNAEYNPKK  AV+MRIREP+ T L+F +GK+V+TGA   +A+R A+ ++ K+++  G     +     FTVQN+V++ ++  PI LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTGAK  + + EA   + P+L QY++
Sbjct:   59 ILQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASRIASQRYSKIIQKLGFSVYFDS----FTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQYRK 232          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: L2GNX2_VITCO (TATA-box-binding protein n=1 Tax=Vittaforma corneae (strain ATCC 50505) TaxID=993615 RepID=L2GNX2_VITCO)

HSP 1 Score: 160 bits (405), Expect = 1.870e-43
Identity = 80/191 (41.88%), Postives = 124/191 (64.92%), Query Frame = 3
Query:  129 PQNNHQPQPQVRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
            P+  H  +  +  VLQNV AT+N+   +D  S+A + RNAEYNPK+  AV+MRIR+P+ T L+F +GK+V+TGA   +A++ A+ ++ K++   G     N Q   F +QN+V++ ++   I LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTGAK  + + EA   + P+L QY++
Sbjct:   10 PKQTHLQRTGITPVLQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEKASKMASQRYAKIISKLGF----NAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSNFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREDIYEAFDNIYPVLTQYRK 196          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A7J7ISE2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ISE2_9RHOD)

HSP 1 Score: 161 bits (407), Expect = 3.350e-43
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 3
Query:  114 VSPIVPQNNHQPQPQVRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKEPEN 710
            VS  V +    P   V V LQNV AT+N+   +D   +A + RNAEYNPK+  AV+MRIR+P+ T L+F TGKVVITGA   E AR AA K+ K+V   G +     +   F + N+VA+ ++  PI LE +A+  + +  YEPELFPGL+Y+     +   +F SG+VV+TGAK  D LN+A  KL P+L Q+++ ++
Sbjct:   24 VSSTVERFRRPPVADVEVKLQNVVATVNLVCPLDLRHIAMRARNAEYNPKRFAAVIMRIRDPKTTALIFSTGKVVITGARSEEDARLAARKYAKIVRKLGYEDV---KFADFGLHNLVASADVRFPIRLEALAHAHSNYAHYEPELFPGLVYRMLEPKLALLIFVSGKVVITGAKSRDDLNDAFQKLYPVLCQFRKADS 219          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A507C8B1_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C8B1_9FUNG)

HSP 1 Score: 160 bits (405), Expect = 3.910e-43
Identity = 80/178 (44.94%), Postives = 119/178 (66.85%), Query Frame = 3
Query:  168 VLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
            +LQN+ AT+N+   +D  ++A   RNAEYNPK+  AV+MRIREP+ T L+F +GK+V+TGA   E AR AA K+ ++++  G     N +   F +QN+V + ++  PI LE +A + + +  YEPELFPGLIY+     VV  +F SG+VVLTGAK  +H+ +A  K+ P+L+ YK+
Sbjct:   48 ILQNIVATVNLEARLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEEQARLAARKYARIIQKLGF----NAKFSDFKIQNIVGSCDVKFPIRLEGLASDHSAFANYEPELFPGLIYRMVDPKVVLLIFVSGKVVLTGAKTREHIYDAFEKIFPVLSMYKK 221          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: UPI0010FB6E15 (TATA-box-binding protein-like n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB6E15)

HSP 1 Score: 159 bits (403), Expect = 4.260e-43
Identity = 82/195 (42.05%), Postives = 124/195 (63.59%), Query Frame = 3
Query:  117 SPIVPQNNHQPQPQVRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
            SP V     Q +  +  VLQNV AT+N+   +D  ++A + RNAEYNPK+  AV+MRIR+P+ T L+F +GK+VITGA   E++R AA K+ +++   G     N +   F +QN+V++ +    I LE +A+  + +C YEPELFPGLIY+     +V  +F SG++VLTGAK  D + +A   + P+L QY++
Sbjct:   11 SPCVGSEVQQQRSGITPVLQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTSLIFASGKMVITGAKSEESSRIAAQKYARIIHKLGF----NTRFADFKIQNIVSSCDTKFSIRLEGLAFAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTQYRK 201          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A0P9H129_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9H129_RHOGW)

HSP 1 Score: 160 bits (406), Expect = 4.570e-43
Identity = 80/178 (44.94%), Postives = 116/178 (65.17%), Query Frame = 3
Query:  171 LQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKEP 704
            LQN+ AT+N+   +D  ++A   RNAEYNPK+  AV+MRIREP+ T LVF +GKVV+TGA   + AR AA KF +++   G +         F +QN+V + ++  PI LE +AY    +  YEPELFPGLIY+     VV  +F SG++VLTGAK  + + +A  ++ P+LN+Y++P
Sbjct:   66 LQNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKVVVTGAKSEDDARLAARKFARIIMKLGFETKFTD----FKIQNIVGSCDVKFPIRLEGLAYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKFREEIYQAFAQIYPVLNEYRKP 239          
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A109FK61_9BASI (TBP-domain-containing protein n=3 Tax=Rhodotorula TaxID=5533 RepID=A0A109FK61_9BASI)

HSP 1 Score: 161 bits (407), Expect = 5.120e-43
Identity = 79/178 (44.38%), Postives = 117/178 (65.73%), Query Frame = 3
Query:  171 LQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKEP 704
            LQN+ AT+N+   +D  ++A   RNAEYNPK+  AV+MRIREP+ T LVF +GKVV+TGA   + +R AA K+ ++++  G +         F +QN+V + ++  PI LE +AY    +  YEPELFPGLIY+     VV  +F SG++VLTGAK  D + +A  ++ P+LN+Y++P
Sbjct:   82 LQNLVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKVVVTGAKSEDDSRLAARKYARIIQKLGFETKFTD----FKIQNIVGSCDVKFPIRLEGLAYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKQRDEIYQAFAQIYPVLNEYRKP 255          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V1_ECTSI3.670e-10478.37Transcription initiation factor TFIID n=2 Tax=Ecto... [more]
A0A7S3JUH6_9STRA1.500e-4645.74Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YMS8_AURAN2.660e-4650.28Uncharacterized protein GTF n=1 Tax=Aureococcus an... [more]
A9CTI1_ENTBH2.580e-4445.51Transcription initiation factor TFIID n=1 Tax=Ente... [more]
L2GNX2_VITCO1.870e-4341.88TATA-box-binding protein n=1 Tax=Vittaforma cornea... [more]
A0A7J7ISE2_9RHOD3.350e-4344.22Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A507C8B1_9FUNG3.910e-4344.94Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
UPI0010FB6E154.260e-4342.05TATA-box-binding protein-like n=1 Tax=Nylanderia f... [more]
A0A0P9H129_RHOGW4.570e-4344.94Uncharacterized protein n=1 Tax=Rhodotorula gramin... [more]
A0A109FK61_9BASI5.120e-4344.38TBP-domain-containing protein n=3 Tax=Rhodotorula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:62880..66551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.3
Seed ortholog evalue1.4e-84
Seed eggNOG ortholog2880.D7G0V1
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
Ec32 ortholog descriptionTATA-box binding protein
Ec32 orthologEc-23_002200.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Exons6
Model size1326
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1434.1prot_C-linearis_contig110.1434.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 63493..66483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.595617-UTR-C-linearis_contig110:62879..634921622927473.595617-UTR-C-linearis_contig110:62879..63492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 62880..63492 -
1690879721.8818643-UTR-C-linearis_contig110:62879..634921690879721.8818643-UTR-C-linearis_contig110:62879..63492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 62880..63492 -
1622927473.6815083-UTR-C-linearis_contig110:66483..665511622927473.6815083-UTR-C-linearis_contig110:66483..66551Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 66484..66551 -
1690879721.9600573-UTR-C-linearis_contig110:66483..665511690879721.9600573-UTR-C-linearis_contig110:66483..66551Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 66484..66551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.6092684-CDS-C-linearis_contig110:63492..635881622927473.6092684-CDS-C-linearis_contig110:63492..63588Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 63493..63588 -
1690879721.8946252-CDS-C-linearis_contig110:63492..635881690879721.8946252-CDS-C-linearis_contig110:63492..63588Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 63493..63588 -
1622927473.6214375-CDS-C-linearis_contig110:64095..641861622927473.6214375-CDS-C-linearis_contig110:64095..64186Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 64096..64186 -
1690879721.903148-CDS-C-linearis_contig110:64095..641861690879721.903148-CDS-C-linearis_contig110:64095..64186Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 64096..64186 -
1622927473.6311054-CDS-C-linearis_contig110:64512..645961622927473.6311054-CDS-C-linearis_contig110:64512..64596Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 64513..64596 -
1690879721.9114897-CDS-C-linearis_contig110:64512..645961690879721.9114897-CDS-C-linearis_contig110:64512..64596Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 64513..64596 -
1622927473.6416733-CDS-C-linearis_contig110:65068..652321622927473.6416733-CDS-C-linearis_contig110:65068..65232Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 65069..65232 -
1690879721.9239285-CDS-C-linearis_contig110:65068..652321690879721.9239285-CDS-C-linearis_contig110:65068..65232Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 65069..65232 -
1622927473.654037-CDS-C-linearis_contig110:65477..656031622927473.654037-CDS-C-linearis_contig110:65477..65603Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 65478..65603 -
1690879721.9343638-CDS-C-linearis_contig110:65477..656031690879721.9343638-CDS-C-linearis_contig110:65477..65603Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 65478..65603 -
1622927473.666941-CDS-C-linearis_contig110:66399..664831622927473.666941-CDS-C-linearis_contig110:66399..66483Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 66400..66483 -
1690879721.9452565-CDS-C-linearis_contig110:66399..664831690879721.9452565-CDS-C-linearis_contig110:66399..66483Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 66400..66483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1434.1

>prot_C-linearis_contig110.1434.1 ID=prot_C-linearis_contig110.1434.1|Name=mRNA_C-linearis_contig110.1434.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=215bp
MASLPGLAHPQAPVQVSPIVPQNNHQPQPQVRVVLQNVTATINMRITVDA
SSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAA
REAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYN
RARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALV
KLLPILNQYKEPEN*
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mRNA from alignment at C-linearis_contig110:62880..66551-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1434.1 ID=mRNA_C-linearis_contig110.1434.1|Name=mRNA_C-linearis_contig110.1434.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3672bp|location=Sequence derived from alignment at C-linearis_contig110:62880..66551- (Chordaria linearis ClinC8C monoicous)
CGCTGATCTTTGCTTGCCATTCTGCCCAGGCTGGACTGCGCGCAGGTGCA AGAGAAGTGGGTGAGGACATGGCGTCGCTTCCAGGCTTGGCTCATCCCCA AGCTCCGGTGCAGGTTTCGCCAATCGTGCCCCAGAACAACCATCAACCGC AGGTACATACCTCGCTCGGAGACAAGATCGTTGCATCACGTTACCTTGAC GCCTCAACCGCTGACACTTGCTACGTGCAGGCGCCAGCGTTCAAAGCGTG AGCTCGCACGGCTATTCCCAGCTTTGCACAGCGTTCTTGGTGGACAGGTT TCTTTGCTGTTGGCCATTTTCGTAGTCATAACATAGACGTATATAGGCAC ACAACAGGGATGTCCACACGAGCAGCAGCAGCAGCAGCAGCCAAACGAAG CACTCGTTGTCAACATGAGGCGCGATAGGTATCTTGTTCCCTTGCCTAGC CCAACTTAGCCGTCGGGGACTTGGGCACAGGGGTTCACGTGATTGTAGGT TGTCGGCTTTCCCTGTCCAATCCAAACTATGATGCCGAGTACGCCGACTC AACTTCTGTACATGCTGCAGCATGCTCTCGGGATGTTTCAGCGCATAGGA CACGTCTCTCTCTGCTGTCGATGAGAGCTGTAGTAATCGCACGCATGACC GCCTCCGGAAAATAAACCGGTTAGCGTCTCGGCCGCCCCTTGGGCCGGCG TGAAGGCAGCACTCAAGTGTTATTGTGAAGAAATACATAGTACCTAGTCT ATGGGCAGAGCCTTTGATGCTGTGTTAATCGATTGCTTCGCTAAGCACAC AGGACGCATCCCGCCAGACCGCGCAAAGCACCCAGAAGCACACCGGCAAG CGCGATAATGGCGGCGCAAGTTACCGTTTCTCCCCGGCCACGGTTTCCCG TACCCAACCCCCTCTCCTCCCGATCCATCCCACAAATTTGTCCTCCAGCC GCAAGTGCGAGTGGTGCTCCAGAACGTGACCGCCACGATCAACATGCGCA TCACCGTCGATGCGAGCAGCTTGGCCAATAAAGTCAGGAACGCCGAGTAC AACCCCAAGAAACTTCCTGCCGTGGTGAGCACAGCGGCAGTTTCTGGAAA GCGCCACTGACTGAGCACGGATTCAGGTTGACCACATTTGGGCACATTTG GGCACTATTACTATCACTGCTGCTGCTGCTGCTGCAGGTTTCGCGTTCCC CACCCTCCGCAACGCACACGAAACAAGCGTCGCAAATTCCCCGGCCTTCT CCGTCCGCCTACCCAGTTAAACTGTCGTTGCCTATCTCCCCCTTCCGTGT AAAATGCACAACGGACCAGGTGATGAGAATACGAGAGCCACAGGCTACGG GCCTTGTGTTTCCGACGGGCAAGGTGGTGATCACGGGGGCGACGGGCGTG GAAGCCGCTCGCGAAGCCGCGAACAAGTTCGTCAAAGTCGTGGAGGCGTT TGGTTTAAAGCCCGCCACCAATCCTCAGGCTCTGTAAGTCTCCAATTTGC GCTGGACGGTTGCACAGCAGTAGTGGTGTTGTGTCGGATCAAACGGGGCG TTAGGCCGATACATAGACTCGCGCGCTTGCGCTCCACTCTATCCTTTCGG TTGAACAGCCATCGTCCCCAACCGAACCAAATTGCAGATATATCTTAGCT TTGTTGGTGTGTCGAGGAATTGGCTTCGACTCATGATGGCCCTCTTGTGT GCTTCCGTGGTAAGCTAGTTCGTAGTTTCCTAGCCCTCGGTAGGAGTTCT TTTTCTCGCGAGAGCAACGCCGCCTTGGATGTGTTCCCCTCCCAACGCTG AGGCGAAACCTTTTGTACTACAGTACTTCAAGCACATTGTCACTTTTTGC TGTTGTTTTTGGTGTGACAAGAGACGCCGGCGTGGATAGTTCTGTCCTGT TTGGCTACAACGGCATGCATGGTCAACAATCACCCCCCCCCCGGGCCCTA GACAGGCGCTTCACCGTGCAGAACATGGTGGCGACGTTCGAGATGGACGC CCCGATTAGCCTTGAGCTCATGGCGTACAACAGAGCAAGGTGGGTGGGTG GGTGGGTGGGTGGGATGAGTAGTACTCGGCTCAGGGGCAATACGTCCAAG CACGCCTTGACCCAGCAATGAGCGTCTTGTTTATCTGTATCTTTTCAATA GCGATGCCTTGTTTTGGGCTGGTTCTCATGCTCATGCTTTGGACACGCTT CCGAAGGCCGCTGTTGGGTGGTGGGGTCACAGCTGCTGCGTGGGAGCAGG GCTCGCGCTTGATTTTCGAGATTGTGGTTGCGTTGTTTTGCGTGTCCCAA GTCTCACCTCAGGCCTAACGCGAGTGCGCCGGTTCCAAACCCACACCACC TGTCCGTGGGTGCAGATGGTGCATGTACGAGCCGGAGCTGTTTCCGGGGT TGATTTACCAGACTGCCCACAGAGGGGTTGTGGCGCACGTCTTTTCTTCC GGCAGGGTGAGCAAGATTGTCGTCACACTAGCCGATTGAGCGTTGTGCTG TCGCAGGTGCTGGAATTGAACCGCGTTCAAATGCGATACCTCGACTGATA GTTTCTGAGGGCGCCGGCTTGGGTTGCCGTCTTGTAGGCGAGGCCAACAA AGTGTTAAGTGTTGCGCCAGCAGCAGAATTCGCGATTTAAATCGAGTTTC ACCGACTTCGTGCTCTTTTTTTTTGTGTCTCGTTGCGATCCCCATCTTCC CTGTGGGTCTGTTGTCCAACCGCTATGCGTTCACAATGTGCGCTGGGAGG GATCAAACCACCGCAACTTTTGGCATTCGCAAAACTGCCAGCAGAATCCA CGCGCTCGTCTCGCTTGGACCGCGCGTATTCCGTACGTCACTTTCTTGGG CGGACCGATTTGTTTTTTTGTTTTTTTGGGCAGCCCCTGTATCGTACATG CTGTTGCTTCTCCGTGCATCCCTCTCGGTACCAACCAATGAACCGCGCCC GAAAACATTCCAGGTGGTTCTGACGGGGGCCAAGCACGAAGACCACCTGA ACGAGGCGCTGGTGAAGCTGCTGCCCATCCTCAACCAGTACAAAGAGCCA GAGAACTAGTGGAGACGTATGTACACTTCGTAGACTCGGTCGGAAGTCAT GCTTCTCTTGCTGACGCGAGATGACTTGGAATGGCCTGCGCCCACAGTCG TGGTGCGCGAAGTGGCGCAGAACCCTGCGTTATTTTACCACGGCCTTAGG AGAGGAAGCTCGCCCAGCTTGCCCCCTCGCCGAGAAGATTGCCCCGGACT TGGCTTCTTTTTGCGGCACATAGAACCAGCCTGCCGTGAGCAACCACGTG TTGTGTCTGGTGCCTCTTCTTGTGCCCGTAAGGTCAGCTTTCGGCGGTGG TTCACAAGCGGTCTTGGTGTTTCCGCCTCGTGCACGACGGACGACGCTAG GGCCACAGCGCGGCGTGTGGCTGGGGGGGGGCGTTAACGTGTGCGGGTAC CAGCAGCCCGTCGATGTTATCCGCTCAGGATTGCGCATCTTGTCCTAACC GCTTTGTTGTTGCTCCGATCCGACAGTTTGTGCCAGAGTGTCCACCCACC GCGGTGTCTCGCATGCCGTGCTTTACAAAGAGGCGTGAAACGGGGTCAAG CAATATGGTCAAAATATGACGTTTGTTGTTCACTTTATGAGGGGTAGCCG AACCCCCCTCCCACTGCGTTCC
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Coding sequence (CDS) from alignment at C-linearis_contig110:62880..66551-

>mRNA_C-linearis_contig110.1434.1 ID=mRNA_C-linearis_contig110.1434.1|Name=mRNA_C-linearis_contig110.1434.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at C-linearis_contig110:62880..66551- (Chordaria linearis ClinC8C monoicous)
ATGGCGTCGCTTCCAGGCTTGGCTCATCCCCAAGCTCCGGTGCAGGTTTC
GCCAATCGTGCCCCAGAACAACCATCAACCGCAGATGGCGTCGCTTCCAG
GCTTGGCTCATCCCCAAGCTCCGGTGCAGGTTTCGCCAATCGTGCCCCAG
AACAACCATCAACCGCAGCCGCAAGTGCGAGTGGTGCTCCAGAACGTGAC
CGCCACGATCAACATGCGCATCACCGTCGATGCGAGCAGCTTGGCCAATA
AAGTCAGGAACGCCGAGTACAACCCCAAGAAACTTCCTGCCGTGCCGCAA
GTGCGAGTGGTGCTCCAGAACGTGACCGCCACGATCAACATGCGCATCAC
CGTCGATGCGAGCAGCTTGGCCAATAAAGTCAGGAACGCCGAGTACAACC
CCAAGAAACTTCCTGCCGTGGTGATGAGAATACGAGAGCCACAGGCTACG
GGCCTTGTGTTTCCGACGGGCAAGGTGGTGATCACGGGGGCGACGGGCGT
GGAAGCCGCTCGCGAAGCCGCGAACAAGTTCGTCAAAGTCGTGGAGGCGT
TTGGTTTAAAGCCCGCCACCAATCCTCAGGCTCTGTGATGAGAATACGAG
AGCCACAGGCTACGGGCCTTGTGTTTCCGACGGGCAAGGTGGTGATCACG
GGGGCGACGGGCGTGGAAGCCGCTCGCGAAGCCGCGAACAAGTTCGTCAA
AGTCGTGGAGGCGTTTGGTTTAAAGCCCGCCACCAATCCTCAGGCTCTGC
GCTTCACCGTGCAGAACATGGTGGCGACGTTCGAGATGGACGCCCCGATT
AGCCTTGAGCTCATGGCGTACAACAGAGCAAGGCGCTTCACCGTGCAGAA
CATGGTGGCGACGTTCGAGATGGACGCCCCGATTAGCCTTGAGCTCATGG
CGTACAACAGAGCAAGATGGTGCATGTACGAGCCGGAGCTGTTTCCGGGG
TTGATTTACCAGACTGCCCACAGAGGGGTTGTGGCGCACGTCTTTTCTTC
CGGCAGGATGGTGCATGTACGAGCCGGAGCTGTTTCCGGGGTTGATTTAC
CAGACTGCCCACAGAGGGGTTGTGGCGCACGTCTTTTCTTCCGGCAGGGT
GGTTCTGACGGGGGCCAAGCACGAAGACCACCTGAACGAGGCGCTGGTGA
AGCTGCTGCCCATCCTCAACCAGTACAAAGAGCCAGAGAACTAGGTGGTT
CTGACGGGGGCCAAGCACGAAGACCACCTGAACGAGGCGCTGGTGAAGCT
GCTGCCCATCCTCAACCAGTACAAAGAGCCAGAGAACTAG
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