mRNA_C-linearis_contig110.1434.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: D7G0V1_ECTSI (Transcription initiation factor TFIID n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0V1_ECTSI) HSP 1 Score: 317 bits (812), Expect = 3.670e-104 Identity = 163/208 (78.37%), Postives = 177/208 (85.10%), Query Frame = 3
Query: 84 GLAHPQAPVQVSPIVPQNNHQPQPQVRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKEPE 707
G AH A + P N QP VRVVLQNVTAT+NMRIT+D SSLANK+R+AEYNPKKLPAVVMRIREPQATGL+F +GKVVITGA GVEAAREAA +FV VVE GL P TNP LRF VQNMVATFE+DAPISLELMAY +ARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTG K EDHLNEALV+LLPILNQY++P+
Sbjct: 6 GYAHAPAAQPAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPD 213
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A7S3JUH6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUH6_9STRA) HSP 1 Score: 178 bits (452), Expect = 1.500e-46 Identity = 102/223 (45.74%), Postives = 139/223 (62.33%), Query Frame = 3
Query: 63 EDMASLPGLAHP--QAPVQVS--PIVPQNNHQPQPQ------VRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
EDM + LA QA +V+ +V + PQP+ R+V+QNV AT N+RI +D +LA RNAEYNPKK AV+MR+REP+ TGL+F TGK+V TGA +R A KF V++ G NP+ FT+QNMVAT +++ PI LE + Y+ +++C YEPELFPG IY+ V +F SGR+V+TGAK HL A K+ P+L Q+K+
Sbjct: 18 EDMTAEEALAEESRQAVTEVTRQQLVATASPSPQPEWSHTSGTRIVIQNVVATANLRIAIDLKTLATSARNAEYNPKKFAAVIMRLREPRCTGLIFSTGKMVCTGAKSEHESRMGARKFAAVLDKIGW----NPKFTEFTIQNMVATADVNFPIRLEQLVYSHSKFCSYEPELFPGCIYRLVVPKTVILLFVSGRMVITGAKSVSHLQTAFDKIFPVLLQFKK 236
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: F0YMS8_AURAN (Uncharacterized protein GTF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMS8_AURAN) HSP 1 Score: 170 bits (431), Expect = 2.660e-46 Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 3
Query: 171 LQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
+QNV AT+N+RI++D +LA RNAEYNPKK AV+MR+REP+ T LVF TGK+VITGA +AAR A KF ++ G +P F VQNMVAT + PI LE + Y A++ YEPELFPGLIY+ V +F SGR+VLTG K HL A K+ P+L ++K+
Sbjct: 50 VQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKFG----EFKVQNMVATSDAGFPIRLEALVYAHAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKK 222
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A9CTI1_ENTBH (Transcription initiation factor TFIID n=1 Tax=Enterocytozoon bieneusi (strain H348) TaxID=481877 RepID=A9CTI1_ENTBH) HSP 1 Score: 164 bits (414), Expect = 2.580e-44 Identity = 81/178 (45.51%), Postives = 120/178 (67.42%), Query Frame = 3
Query: 168 VLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
+LQNV AT+N+ +D S+A RNAEYNPKK AV+MRIREP+ T L+F +GK+V+TGA +A+R A+ ++ K+++ G + FTVQN+V++ ++ PI LE +AY + +C YEPELFPGLIY+ +V +F SG++VLTGAK + + EA + P+L QY++
Sbjct: 59 ILQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASRIASQRYSKIIQKLGFSVYFDS----FTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQYRK 232
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: L2GNX2_VITCO (TATA-box-binding protein n=1 Tax=Vittaforma corneae (strain ATCC 50505) TaxID=993615 RepID=L2GNX2_VITCO) HSP 1 Score: 160 bits (405), Expect = 1.870e-43 Identity = 80/191 (41.88%), Postives = 124/191 (64.92%), Query Frame = 3
Query: 129 PQNNHQPQPQVRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
P+ H + + VLQNV AT+N+ +D S+A + RNAEYNPK+ AV+MRIR+P+ T L+F +GK+V+TGA +A++ A+ ++ K++ G N Q F +QN+V++ ++ I LE +AY + +C YEPELFPGLIY+ +V +F SG++VLTGAK + + EA + P+L QY++
Sbjct: 10 PKQTHLQRTGITPVLQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEKASKMASQRYAKIISKLGF----NAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSNFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREDIYEAFDNIYPVLTQYRK 196
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A7J7ISE2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ISE2_9RHOD) HSP 1 Score: 161 bits (407), Expect = 3.350e-43 Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 3
Query: 114 VSPIVPQNNHQPQPQVRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKEPEN 710
VS V + P V V LQNV AT+N+ +D +A + RNAEYNPK+ AV+MRIR+P+ T L+F TGKVVITGA E AR AA K+ K+V G + + F + N+VA+ ++ PI LE +A+ + + YEPELFPGL+Y+ + +F SG+VV+TGAK D LN+A KL P+L Q+++ ++
Sbjct: 24 VSSTVERFRRPPVADVEVKLQNVVATVNLVCPLDLRHIAMRARNAEYNPKRFAAVIMRIRDPKTTALIFSTGKVVITGARSEEDARLAARKYAKIVRKLGYEDV---KFADFGLHNLVASADVRFPIRLEALAHAHSNYAHYEPELFPGLVYRMLEPKLALLIFVSGKVVITGAKSRDDLNDAFQKLYPVLCQFRKADS 219
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A507C8B1_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C8B1_9FUNG) HSP 1 Score: 160 bits (405), Expect = 3.910e-43 Identity = 80/178 (44.94%), Postives = 119/178 (66.85%), Query Frame = 3
Query: 168 VLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
+LQN+ AT+N+ +D ++A RNAEYNPK+ AV+MRIREP+ T L+F +GK+V+TGA E AR AA K+ ++++ G N + F +QN+V + ++ PI LE +A + + + YEPELFPGLIY+ VV +F SG+VVLTGAK +H+ +A K+ P+L+ YK+
Sbjct: 48 ILQNIVATVNLEARLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEEQARLAARKYARIIQKLGF----NAKFSDFKIQNIVGSCDVKFPIRLEGLASDHSAFANYEPELFPGLIYRMVDPKVVLLIFVSGKVVLTGAKTREHIYDAFEKIFPVLSMYKK 221
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: UPI0010FB6E15 (TATA-box-binding protein-like n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB6E15) HSP 1 Score: 159 bits (403), Expect = 4.260e-43 Identity = 82/195 (42.05%), Postives = 124/195 (63.59%), Query Frame = 3
Query: 117 SPIVPQNNHQPQPQVRVVLQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKE 701
SP V Q + + VLQNV AT+N+ +D ++A + RNAEYNPK+ AV+MRIR+P+ T L+F +GK+VITGA E++R AA K+ +++ G N + F +QN+V++ + I LE +A+ + +C YEPELFPGLIY+ +V +F SG++VLTGAK D + +A + P+L QY++
Sbjct: 11 SPCVGSEVQQQRSGITPVLQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTSLIFASGKMVITGAKSEESSRIAAQKYARIIHKLGF----NTRFADFKIQNIVSSCDTKFSIRLEGLAFAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTQYRK 201
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A0P9H129_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9H129_RHOGW) HSP 1 Score: 160 bits (406), Expect = 4.570e-43 Identity = 80/178 (44.94%), Postives = 116/178 (65.17%), Query Frame = 3
Query: 171 LQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKEP 704
LQN+ AT+N+ +D ++A RNAEYNPK+ AV+MRIREP+ T LVF +GKVV+TGA + AR AA KF +++ G + F +QN+V + ++ PI LE +AY + YEPELFPGLIY+ VV +F SG++VLTGAK + + +A ++ P+LN+Y++P
Sbjct: 66 LQNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKVVVTGAKSEDDARLAARKFARIIMKLGFETKFTD----FKIQNIVGSCDVKFPIRLEGLAYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKFREEIYQAFAQIYPVLNEYRKP 239
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Match: A0A109FK61_9BASI (TBP-domain-containing protein n=3 Tax=Rhodotorula TaxID=5533 RepID=A0A109FK61_9BASI) HSP 1 Score: 161 bits (407), Expect = 5.120e-43 Identity = 79/178 (44.38%), Postives = 117/178 (65.73%), Query Frame = 3
Query: 171 LQNVTATINMRITVDASSLANKVRNAEYNPKKLPAVVMRIREPQATGLVFPTGKVVITGATGVEAAREAANKFVKVVEAFGLKPATNPQALRFTVQNMVATFEMDAPISLELMAYNRARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGAKHEDHLNEALVKLLPILNQYKEP 704
LQN+ AT+N+ +D ++A RNAEYNPK+ AV+MRIREP+ T LVF +GKVV+TGA + +R AA K+ ++++ G + F +QN+V + ++ PI LE +AY + YEPELFPGLIY+ VV +F SG++VLTGAK D + +A ++ P+LN+Y++P
Sbjct: 82 LQNLVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKVVVTGAKSEDDSRLAARKYARIIQKLGFETKFTD----FKIQNIVGSCDVKFPIRLEGLAYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKQRDEIYQAFAQIYPVLNEYRKP 255 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig110.1434.1 >prot_C-linearis_contig110.1434.1 ID=prot_C-linearis_contig110.1434.1|Name=mRNA_C-linearis_contig110.1434.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=215bp MASLPGLAHPQAPVQVSPIVPQNNHQPQPQVRVVLQNVTATINMRITVDAback to top mRNA from alignment at C-linearis_contig110:62880..66551- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig110.1434.1 ID=mRNA_C-linearis_contig110.1434.1|Name=mRNA_C-linearis_contig110.1434.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3672bp|location=Sequence derived from alignment at C-linearis_contig110:62880..66551- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig110:62880..66551- >mRNA_C-linearis_contig110.1434.1 ID=mRNA_C-linearis_contig110.1434.1|Name=mRNA_C-linearis_contig110.1434.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at C-linearis_contig110:62880..66551- (Chordaria linearis ClinC8C monoicous)back to top |