mRNA_C-linearis_contig110.1429.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1429.1
Unique NamemRNA_C-linearis_contig110.1429.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig110.1429.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 4.460e-53
Identity = 106/156 (67.95%), Postives = 121/156 (77.56%), Query Frame = 1 
Query:    1 VATKPAGGRRRGFLHGKVAAASALMGLESLRVVPSGRMEEIFVGETVTVASADGR-RAARPHRLAQVVWVKDRSLLVPRVSPFLTTTDARIKSATSQRGGAPEGVWEVVDDNGGEEVAISRIFGRCDIVRFDQQGGARSPSSRQVFTGAGFIKRAG 465
            VATKPAGG RRGFLHGKVAAASALMG+ESL V PSGR E+IFVG+TV VASAD R   ARP+RLA+VVWV+D S LV RVSPFLT+ +ARI  A    G  P+ VWEVVD +GGEE+ ISRI GRCD+V   Q  GA S SS +VF+ AGFI+R G
Sbjct:  136 VATKPAGGLRRGFLHGKVAAASALMGVESLLVGPSGRQEKIFVGDTVLVASADERPEEARPYRLAEVVWVEDLSRLVSRVSPFLTSAEARITGA----GAPPDVVWEVVDGDGGEEIDISRIEGRCDVVPHVQGAGAGSSSSGRVFSAAGFIRRCG 287
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BLAST of mRNA_C-linearis_contig110.1429.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.220e-29
Identity = 69/152 (45.39%), Postives = 90/152 (59.21%), Query Frame = 1 
Query:    1 VATKPAGGRRRGFLHGKVAAASALMGLESLRVVPSGRMEEIFVGETVTVASADGRRAARPHRLAQVVWVKDRSLLVPRVSPFLTTTDARIKSATSQRGGAPEGVWEVVDDNGGEEVAISRIFGRCDIVRFDQQGGARSPSSRQVFTGAGFIK 456
            VAT P GG RRGFLHG++AA+SALM +ESLRV P G                       PHRLA V W ++   LV RV+PFLTT  A + +  +        VWEVV D+GGE V ++RI  RCD++   Q+ GA S S+R+++T AGFI+
Sbjct:  166 VATTPLGGLRRGFLHGRIAASSALMSIESLRVGPDGGXXXXXXXXXXXXXXXXXXXXQLPHRLAAVTWDEEEERLVARVNPFLTTEAALLNNPPAVEEERLPLVWEVVTDDGGERVDLTRITTRCDVIPLAQEAGAGS-SARRLYTCAGFIR 316
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYQ6_9PHAE4.460e-5367.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF97_9PHAE8.220e-2945.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:16162..16628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.6702936-CDS-C-linearis_contig110:16161..166261622927472.6702936-CDS-C-linearis_contig110:16161..16626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 16162..16626 +
1690879721.260787-CDS-C-linearis_contig110:16161..166261690879721.260787-CDS-C-linearis_contig110:16161..16626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 16162..16626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1429.1prot_C-linearis_contig110.1429.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 16162..16626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1429.1

>prot_C-linearis_contig110.1429.1 ID=prot_C-linearis_contig110.1429.1|Name=mRNA_C-linearis_contig110.1429.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp
VATKPAGGRRRGFLHGKVAAASALMGLESLRVVPSGRMEEIFVGETVTVA
SADGRRAARPHRLAQVVWVKDRSLLVPRVSPFLTTTDARIKSATSQRGGA
PEGVWEVVDDNGGEEVAISRIFGRCDIVRFDQQGGARSPSSRQVFTGAGF
IKRAG
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mRNA from alignment at C-linearis_contig110:16162..16628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1429.1 ID=mRNA_C-linearis_contig110.1429.1|Name=mRNA_C-linearis_contig110.1429.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=467bp|location=Sequence derived from alignment at C-linearis_contig110:16162..16628+ (Chordaria linearis ClinC8C monoicous)
GTAGCAACGAAACCGGCTGGTGGGCGCCGGCGCGGTTTCCTCCACGGGAA
GGTCGCGGCGGCGTCCGCGCTCATGGGTCTCGAATCATTGCGCGTTGTCC
CGAGCGGAAGGATGGAGGAGATCTTTGTTGGGGAGACTGTCACGGTTGCG
TCTGCCGACGGACGGCGGGCGGCGCGGCCCCATCGCCTGGCGCAGGTCGT
TTGGGTTAAAGACCGTAGCTTGCTCGTCCCGAGAGTGAGTCCTTTCCTCA
CGACCACGGACGCCCGGATCAAGTCGGCAACATCACAACGGGGAGGGGCA
CCCGAAGGGGTTTGGGAGGTTGTAGACGACAATGGCGGGGAGGAGGTGGC
CATCAGCCGTATCTTCGGGCGCTGTGATATCGTTCGTTTCGACCAGCAAG
GCGGTGCCCGCTCGCCGAGCTCTCGGCAGGTGTTTACTGGGGCTGGCTTC
ATTAAACGTGCAGGGAA
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Coding sequence (CDS) from alignment at C-linearis_contig110:16162..16628+

>mRNA_C-linearis_contig110.1429.1 ID=mRNA_C-linearis_contig110.1429.1|Name=mRNA_C-linearis_contig110.1429.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at C-linearis_contig110:16162..16628+ (Chordaria linearis ClinC8C monoicous)
GTAGCAACGAAACCGGCTGGTGGGCGCCGGCGCGGTTTCCTCCACGGGAA
GGTCGCGGCGGCGTCCGCGCTCATGGGTCTCGAATCATTGCGCGTTGTCC
CGAGCGGAAGGATGGAGGAGATCTTTGTTGGGGAGACTGTCACGGTTGCG
TCTGCCGACGGACGGCGGGCGGCGCGGCCCCATCGCCTGGCGCAGGTCGT
TTGGGTTAAAGACCGTAGCTTGCTCGTCCCGAGAGTGAGTCCTTTCCTCA
CGACCACGGACGCCCGGATCAAGTCGGCAACATCACAACGGGGAGGGGCA
CCCGAAGGGGTTTGGGAGGTTGTAGACGACAATGGCGGGGAGGAGGTGGC
CATCAGCCGTATCTTCGGGCGCTGTGATATCGTTCGTTTCGACCAGCAAG
GCGGTGCCCGCTCGCCGAGCTCTCGGCAGGTGTTTACTGGGGCTGGCTTC
ATTAAACGTGCAGGGGTAGCAACGAAACCGGCTGGTGGGCGCCGGCGCGG
TTTCCTCCACGGGAAGGTCGCGGCGGCGTCCGCGCTCATGGGTCTCGAAT
CATTGCGCGTTGTCCCGAGCGGAAGGATGGAGGAGATCTTTGTTGGGGAG
ACTGTCACGGTTGCGTCTGCCGACGGACGGCGGGCGGCGCGGCCCCATCG
CCTGGCGCAGGTCGTTTGGGTTAAAGACCGTAGCTTGCTCGTCCCGAGAG
TGAGTCCTTTCCTCACGACCACGGACGCCCGGATCAAGTCGGCAACATCA
CAACGGGGAGGGGCACCCGAAGGGGTTTGGGAGGTTGTAGACGACAATGG
CGGGGAGGAGGTGGCCATCAGCCGTATCTTCGGGCGCTGTGATATCGTTC
GTTTCGACCAGCAAGGCGGTGCCCGCTCGCCGAGCTCTCGGCAGGTGTTT
ACTGGGGCTGGCTTCATTAAACGTGCAGGG
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