mRNA_C-linearis_contig11.1420.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1420.1
Unique NamemRNA_C-linearis_contig11.1420.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: A0A6H5KVJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ1_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 3.000e-104
Identity = 169/206 (82.04%), Postives = 176/206 (85.44%), Query Frame = 2 
Query:   29 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQGASMHLYVPRSAREELKALGPEFKKAYNFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKRSVGTTEEEDRVLSILKKR 646
            MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISS VDIE+RL SVLQGA MHL+VPRSAREELKALGPEF+KAYNFAIG CRGLP P N   A                 EKGPDP KEIIA IGA NEGKYLVASQDENLR RLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERK++VGTTEEEDRVL++LKKR
Sbjct:    1 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSKVDIEKRLTSVLQGAKMHLFVPRSAREELKALGPEFQKAYNFAIGHCRGLPPPRNENQAGGAXXXXXXXXXXXXXGEKGPDPAKEIIAAIGADNEGKYLVASQDENLRMRLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLAVLKKR 206
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: D8LKG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG1_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 3.010e-53
Identity = 97/128 (75.78%), Postives = 101/128 (78.91%), Query Frame = 2 
Query:  200 MHLYVPRSAREELKALGPEFKKAYNFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAE 583
            MHL+VPRSAREELKALGPEF+KAYNFAIG CRGLP P N   A                 EKGPDP KEI+A IGA NEGKYLVASQDENLR RLRR+PGCPLVFVSRTVLVMEQPSGKSKAEFEKAE
Sbjct:    1 MHLFVPRSAREELKALGPEFQKAYNFAIGHCRGLPPPRNENQAXXXXXXXXXXXXXXXXXEKGPDPAKEIVAAIGADNEGKYLVASQDENLRVRLRRIPGCPLVFVSRTVLVMEQPSGKSKAEFEKAE 128
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: A0A836CFL8_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL8_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.960e-51
Identity = 102/207 (49.28%), Postives = 138/207 (66.67%), Query Frame = 2 
Query:   29 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQGASMHLYVPRSAREELKALGPEFKKAYNFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKRSVGTTEEEDRVLSILKKRE 649
            MR+TRAKQYRR LRFFRIVYG+ APYKV+LDGNFIH C++  V++ +R+ +VLQG    L VP++A +EL+ALG +F+ A  FA   C+ +     H P             G+G+      P ++I A I + N  +Y+VASQDE LRA+LR V GCPL+++S+TVL+MEQ SGK+KA FE  ER R  G TEEE  ++  L++ E
Sbjct:    1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTIT---EHAP-------------GKGS------PAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALER-RKTGVTEEETAIVEQLRQEE 184
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: A0A7S2B5Q5_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B5Q5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.990e-29
Identity = 76/204 (37.25%), Postives = 104/204 (50.98%), Query Frame = 2 
Query:   29 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQGASMHLYVPRSAREELKALGPEFKKAYNFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKRSVGTTEEEDRVLSILK 640
            MR+ R K+ R+ L FFR+ +GIS PY+V+LDGNFIH C S  +DI  RL   L G    LYVP     EL+ LG   K A  FA+  C  +      + +A                         I+  IG  N   YLVASQDE+LR  LR +PG PL+F+ RTVL++E     SK    + E K+ V    +E + + +++
Sbjct:    1 MRLLRGKKARKTLAFFRLNFGISPPYRVLLDGNFIHECTSYKIDILARLGKQLGGEKFMLYVPSCVISELEMLGTNMKPALTFALENCEVVACDSAESCSAG------------------------ILGLIGEKNAEGYLVASQDEDLRCELRAIPGVPLMFIKRTVLILESTGHASKTATVQMETKK-VAVVGDESKAMGLVR 179
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: W7T2Y0_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.040e-29
Identity = 78/198 (39.39%), Postives = 113/198 (57.07%), Query Frame = 2 
Query:   56 RRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQGASMHLYVPRSAREELKALGPEFKKAYNFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKRSVGTTEEEDRVLSILKKRE 649
            R+ LRF+RIVYGI+ PYK+++DGNFIH  +   +DI  RL  +L   ++  Y P++  +EL A+GP+F+ A+ +    C  +P P   T      D+ G      GAA         I   +G  N  KY+VA+QD+ L+ARLR VP   L+FVSR V +ME PS  S+    K E ++    TEEE  +L+ L+ +E
Sbjct:    2 RKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKT----NHDDSGKNYVSAGAA---------ICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKE 186
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: W4H7D3_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7D3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.140e-24
Identity = 70/174 (40.23%), Postives = 95/174 (54.60%), Query Frame = 2 
Query:   29 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQGASMHLYVPRSAREELKALGPEFKKAYNFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPS 550
            MR  RAK  R+ LR F+ + GI  PYKV+LDGNFI  CI  +VDI  RL S LQ      +V R+  +ELK L  +      +                A+A    EGG+D          D T  ++A +GA N+ K++VA+Q+  LR RLRRVPG PL++++R+VLV E  S
Sbjct:    1 MRYLRAKHIRKSLRQFQFLCGIKPPYKVLLDGNFIAMCIKMHVDIAVRLPSFLQTDKCTYFVTRAVLDELKLLSDDADMRAAWEA--------------ASAFEVVEGGSDXX-----XXTDVTSSMVAAVGARNDKKFIVATQETELRGRLRRVPGVPLIYLNRSVLVFEDMS 155
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: G4YZS4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZS4_PHYSP)

HSP 1 Score: 109 bits (273), Expect = 8.630e-24
Identity = 68/180 (37.78%), Postives = 93/180 (51.67%), Query Frame = 2 
Query:   29 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQ--GASMHLYVPRSAREELKALGPEFKKAY----NFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPS 550
            MR  RAK  R+ LR F  + GI  PYKV+LDGNFI  C+   VD+++R+   LQ     +  YVPR+A EELK LG   K+AY    NF +      P      P                      D +K + + IG  N+ K++V +Q+  LR  LR VPG PL++++R+VLV E  S
Sbjct:    1 MRYLRAKGIRKALRQFHFLCGIKPPYKVLLDGNFIAMCVQMKVDVQERVPKFLQVKAHEVEFYVPRAALEELKMLGEATKEAYELAQNFKVAEVYDQPKTDGDAPV---------------------DVSKVVQSIIGDKNDRKFVVCTQEVELRKALRLVPGVPLIYLNRSVLVFEDIS 159
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: D8LKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG2_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.040e-23
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 2 
Query:   29 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQGASMHLYVP 217
            MRVTRAKQYR+HLRFFRIVYGISAPYKVILDGNFIHGCISS VDIE+RL SVLQ   +H + P
Sbjct:    1 MRVTRAKQYRKHLRFFRIVYGISAPYKVILDGNFIHGCISSKVDIEKRLTSVLQ---LHYHCP 60
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: A0A7S1C1L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1L6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.280e-23
Identity = 74/191 (38.74%), Postives = 107/191 (56.02%), Query Frame = 2 
Query:   29 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQGAS--MHLYVPRSAREELKALGPEF----KKAYNFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAE 583
            MR+ R KQ+R+ LRF+R++Y +S P+KV+LDGNFIH  + ++ +I++ L S+LQ     + L+V      EL++LG EF     +A  F + RC                   G  D+   AAE        I + IG  N+  + VASQD  LR+RLR V G P++ +S++VLV+EQPS  SK   EK E
Sbjct:   37 MRILRQKQHRKILRFYRMMYNVSPPFKVLLDGNFIHIGLRTSAEIKRLLPSLLQERPDVVRLFVTPCILNELRSLGAEFGDTLAEARTFRVARC-------------------GHGDDPVSAAEC-------IASLIGTKNKEHFFVASQDGLLRSRLRAVAGTPIILLSQSVLVLEQPSDASKGLVEKNE 201
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BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Match: A0A3M6VBL2_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VBL2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.230e-23
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = 2 
Query:   29 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLASVLQGA--SMHLYVPRSAREELKALGPEFKKAYNFAIGRCRGLPLPPNHTPAAAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRARLRRVPGCPLVFVSRTVLVMEQPS 550
            MR  RAK  R+ LR F  + G+ APYKV+LDGNFI  C+   VD+++R+   LQ        YVPR+A EEL+ LG   K+AY  A    +   +  ++             D+ E   +K  D +K I   IG  N+ K++V +Q+  LR  LR VPG PL++++R+VLV E+ S
Sbjct:    1 MRYLRAKGIRKALRQFHFLCGLKAPYKVLLDGNFIAMCLQMKVDVQERVPKYLQVKPYECEFYVPRAALEELQLLGKTMKEAYELA----KSFKVAESY-------------DQSEKEEDKPVDVSKAIQIIIGDTNDRKFVVCTQEVELRKALRLVPGVPLMYLNRSVLVFEEIS 159
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVJ1_9PHAE3.000e-10482.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKG1_ECTSI3.010e-5375.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFL8_9STRA3.960e-5149.28Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2B5Q5_9STRA2.990e-2937.25Hypothetical protein n=3 Tax=Dictyocha speculum Ta... [more]
W7T2Y0_9STRA3.040e-2939.39Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
W4H7D3_9STRA6.140e-2440.23Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
G4YZS4_PHYSP8.630e-2437.78Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D8LKG2_ECTSI1.040e-2382.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1C1L6_9STRA1.280e-2338.74Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A3M6VBL2_9STRA2.230e-2338.64Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3669512..3674658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog42099.EPrPV00000015410
Preferred nameUTP23
KEGG koko:K14773
Hectar predicted targeting categorymitochondrion
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019843,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0070013,GO:0070181,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RRNA-processing protein. Source PGD
EggNOG OGs1MD52@121069,COG1412@1,KOG3164@2759
Ec32 ortholog descriptionPIN domain-like
Ec32 orthologEc-16_002850.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons7
Model size1501
Cds size885
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.8590271-UTR-C-linearis_contig11:3669511..36700991622927471.8590271-UTR-C-linearis_contig11:3669511..3670099Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3669512..3670099 -
1690879720.7779672-UTR-C-linearis_contig11:3669511..36700991690879720.7779672-UTR-C-linearis_contig11:3669511..3670099Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3669512..3670099 -
1622927471.9787948-UTR-C-linearis_contig11:3674630..36746581622927471.9787948-UTR-C-linearis_contig11:3674630..3674658Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3674631..3674658 -
1690879720.8554828-UTR-C-linearis_contig11:3674630..36746581690879720.8554828-UTR-C-linearis_contig11:3674630..3674658Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3674631..3674658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.8757348-CDS-C-linearis_contig11:3670099..36703401622927471.8757348-CDS-C-linearis_contig11:3670099..3670340Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3670100..3670340 -
1690879720.7887456-CDS-C-linearis_contig11:3670099..36703401690879720.7887456-CDS-C-linearis_contig11:3670099..3670340Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3670100..3670340 -
1622927471.888466-CDS-C-linearis_contig11:3670690..36707791622927471.888466-CDS-C-linearis_contig11:3670690..3670779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3670691..3670779 -
1690879720.8036933-CDS-C-linearis_contig11:3670690..36707791690879720.8036933-CDS-C-linearis_contig11:3670690..3670779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3670691..3670779 -
1622927471.902986-CDS-C-linearis_contig11:3671187..36713101622927471.902986-CDS-C-linearis_contig11:3671187..3671310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3671188..3671310 -
1690879720.813413-CDS-C-linearis_contig11:3671187..36713101690879720.813413-CDS-C-linearis_contig11:3671187..3671310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3671188..3671310 -
1622927471.9176705-CDS-C-linearis_contig11:3671723..36719091622927471.9176705-CDS-C-linearis_contig11:3671723..3671909Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3671724..3671909 -
1690879720.822014-CDS-C-linearis_contig11:3671723..36719091690879720.822014-CDS-C-linearis_contig11:3671723..3671909Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3671724..3671909 -
1622927471.9323015-CDS-C-linearis_contig11:3672273..36723571622927471.9323015-CDS-C-linearis_contig11:3672273..3672357Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3672274..3672357 -
1690879720.8303525-CDS-C-linearis_contig11:3672273..36723571690879720.8303525-CDS-C-linearis_contig11:3672273..3672357Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3672274..3672357 -
1622927471.9458084-CDS-C-linearis_contig11:3672998..36730791622927471.9458084-CDS-C-linearis_contig11:3672998..3673079Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3672999..3673079 -
1690879720.8392394-CDS-C-linearis_contig11:3672998..36730791690879720.8392394-CDS-C-linearis_contig11:3672998..3673079Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3672999..3673079 -
1622927471.9649436-CDS-C-linearis_contig11:3674549..36746301622927471.9649436-CDS-C-linearis_contig11:3674549..3674630Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3674550..3674630 -
1690879720.8470592-CDS-C-linearis_contig11:3674549..36746301690879720.8470592-CDS-C-linearis_contig11:3674549..3674630Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3674550..3674630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1420.1prot_C-linearis_contig11.1420.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3670100..3674630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1420.1

>prot_C-linearis_contig11.1420.1 ID=prot_C-linearis_contig11.1420.1|Name=mRNA_C-linearis_contig11.1420.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=295bp
MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSNVDIEQRLA
SVLQGASMHLYVPRSAREELKALGPEFKKAYNFAIGRCRGLPLPPNHTPA
AAGTDEEGGADEGEGAAEKGPDPTKEIIATIGAANEGKYLVASQDENLRA
RLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKRSVGTTEEEDRVL
SILKKREREQRERERASQPRKRLKKKASAPNPLSAKKSSSSSGKAGGGGG
GGAKANASPASSSGAGGNRVRRKRKKSSRSPGGGGEAGGAAGSG*
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mRNA from alignment at C-linearis_contig11:3669512..3674658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1420.1 ID=mRNA_C-linearis_contig11.1420.1|Name=mRNA_C-linearis_contig11.1420.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5147bp|location=Sequence derived from alignment at C-linearis_contig11:3669512..3674658- (Chordaria linearis ClinC8C monoicous)
AGCCAGTTCGTGTGTCTCGTTTCGAGCCATGAGGGTCACGCGGGCGAAGC
AGTACCGGAGACACCTGCGGTTCTTTCGGATCGTGTACGGGATTTCGGCT
CCGTACAAGGTAGGCTCCCAACAAGCACACCGTGTCATATGACAGTCCCG
CCGACCAGTGTGAATTCGATGGCGAGGCACGCGTGTTCGTTGAACTGAAA
TGGTAGCGGAGCGTAGGAGAGCAACGGTCAACTGCTTGTGAGCGATAAGA
GACTGGCGGATCCTCTGAGCTTGTTGGCTCCAGTCGCATCTCTTCGGAAG
GCAGCGGTGTTACCACGCTGCGTTCTGTTCTTGAGTTACAACAGTGCCCC
CCGTGCTCCAACATGCGTCTCCGACGGATCTATTTATGTACCATACATGT
AGTACATTGTGAAGCTTTGTGCTGTGGGCACCGGGGTGCCAGGATATCTG
TGACCAGAAATGGCCACATAGCCCGAGGTCGGGGAAACTAGTTGTCCGCC
GGGTATAATAACCCGAGGTTTTACGTATACAGCGTGATAGCTCGGAGGGT
GTAATAACCCATTGCTAGCGTGGTAGCCAGGTTGGCGTGATAGCCGATAG
ATGAACACATTCATAGGCGTGATAGCCTTGGCGTGATAGCCAGGTCGGCG
TGATAGCCTGCAGGGTGTAATAACCCAGATAGCTGGCGTGTTAGCCAGTG
CTGGCGTGATAGCCAGGTTGGCGTGAAAGCCGATTGATAGACAAAGACAC
AGGCGTGATAGCCTTGGCGTAATAGCCGGGAAAGGATATTCTTATTACCT
CCACAATCAAACACACACACACACACACACACACACATCACAGAAGCAAG
CTCACCGCTCACGCGTCACACACGCAAACCCGCAACTGAACCAACCGATG
GAGGCACAATAATAGAGATAGAGATAAATAGGTGGTACCTCATAACCCAA
TCCAATCCAAACACGAAACCCCAATTTGCCTGCAATCTGCCGTGGAATAT
TCTCTGCTTAATATAATCGGTCAATGCGCGAGTATACATAACATGTACCT
GGTACATATATACTATATACCCCTTGACGGATACTGGTAGGGCAGCATAG
TAGCCCGAGAAAGAGAAAGAGAGAAATAAAGCGATTAATTTACGTAGATG
CCAGATTTTTACTCCCCTGTGATCTGTGGTTTGGTACCGTCCTCTACCTT
CGCCCGAAGTCCGAAGACGCTTGGTGCACCACAGGCACAACATACGGCAG
TATGTGTCTGCTGCTGTTTCTTACCGCTCGTACAAGGAAAGCGCGTACAA
AGTCTCGGGCGGTCTGTGGGCATAGAGGAATGCATGCCTCTTTCAGCGCA
ACGCGATATTTTTGATAAGGCAGCTACTGTGGCGTGGTGGCCCGTGCATT
TTCTATGTTGCTGATGGAATTGGGCCTCTCTTGCGTTGCGTGGTGAATAT
TTACTACTGTGCGTCAATCGAGAGAGCCCCCCCCAATACAGCGTCTATTT
TTGTCTGTTTTTGGTCTCCTGTCGCCCACCTGGTGGCTCCTGGCGCGCTT
GTTTCCCCCTTCTTGACGCTTGGTCTCAGGTCATTCTCGACGGAAATTTC
ATCCACGGCTGCATCTCATCAAATGTCGACATCGAGCAGCGATTGGCCAG
CGTCTTGCAGGTGCGTTTCTTGGTAACCGCTCGAACAACGTTTGGCCATC
CCGTCTGTTTTCTCCGTCGCAGAAAGGTATCTCTCGGTTTTCTGACGGCC
CGTCTTCACGTTGTGAAAAACAAATCCCGGGGAGTGGTGATGCCAGCCAA
AGTGAAGTTCCATAGAGTTCCTTGTCTGCTGCCTCACCTCTGCGGCTAAA
TACTGTACCACGACCCTCGATTGGTATCATGCTCTCGAGAAGGAGGCAAC
ACAGCCGCAGCAGCAGCTTCCTTACATATATGCAGCTGCTTGGGTTTTGC
CTCGCCCCCTATGTTTTTGGCATGGCGGTCGGGTTCGTGGCGTAGACTAC
ACACGGCATTATGGCCGCATTTTCCTTCGCCACGCGGACGACATGCACGT
CTCGGATGCTTCGACACATATTGCACGAGCGCCTTTGTCTTCGCGCCGCT
TCGCATTCTGTTTCCCTACTGCAGAGCAAACCTCGAAACACCCTCCTCCT
CTTCGTGCATCCTGAGTCCTTGGCCCGCCTTTTTTCACCAGTGTTAACAC
TTCATGGTTGACGCCTTATCCTGTCCTTTCATCTGAAAAGTCGTATCCTC
CCCCTCCTCTCCACTGCTGTGTTTTGTGTTTCTCTGCAACGAATATGGAA
GGGAGCATCGATGCACCTGTATGTCCCGAGGAGCGCGAGGGAGGAGCTCA
AGGCGCTAGGTCCAGAGTTCAAGAAGGCGTATAATGTGAGCAATTGGGAG
CAGGCCAAACAGGGCTCCCAGCCCCCCTGCTGTATCGTAGCCAACATGGT
GAACGGTACGATGTAGACACCGCGTTGAGTTCTCATTCCCGCCGGCCACG
GCTGCCTCAACATTTGTCTTGGTGGATACAATAAAGCGGTACACGTCTGT
TGTTTTTACGACGAAACTCAAATGGGGAGAGTTTGGAATCTTCTTCTTTA
AGCCCATGGAAGCTTTTCACCTTCCATCGTAAGTGCAGAGAGATTTTTTT
TTTGTTATCTTGTTGTTGTCGACGGAAGATTGAGCAAGGGTAGCACTCGC
ACACACCCTTGTAATCTGCTTTCGATCCCGGCTCCATGGTGCCCCGCAGT
TCGCGATAGGGCGCTGCAGAGGGCTCCCCCTTCCCCCAAACCATACCCCG
GCGGCGGCAGGGACGGATGAAGAGGGGGGTGCGGACGAGGGGGAAGGCGC
GGCGGAGAAAGGCCCGGATCCGACAAAAGAGATCATTGCGACGATAGGAG
CGGCCAACGAGGGGAAGTACCTGGTCGCGTCTCAGGTACGACGTACGACG
GCAGTGTTGGGTGCGCGATTGTGTTTCAGGCATGGCGGTCGGGTTGTCCC
GTCACGGGCCTATTTGCTGTCGTACAGCTTGCGAACGCGGCCGTTTGGGC
CCGACAGCCATCCGCCCCCTCCCCTGTCTCATGTGACACGGGAAGCAGGC
TCGGTGAAATTCCTCTCTGCCTGCCTGCCTGCCTGCCTGCCAGATTGACG
AAACGGTCCATGGCAGTTGCGGTTGTGGGTGATGCATACATGCACCCGCA
CAGACCTCTCTGCCGCACCGCAGGGATCATTCACTTTCTCCTCTCAATAG
TTTTTCGTGTCCTTTCCGGGGCCCAATGCATCACGGTCCTCGCTGTTGCC
TCTCGCTCTGTTTTTCGCTGCTGTCTCTCGCCTCGTGTCTCTCGCAAGGA
CGAGAACCTCCGCGCACGCCTGCGGCGGGTGCCCGGGTGCCCCCTGGTGT
TTGTGTCGCGGACGGTGCTGGTGATGGAGCAGCCGTCGGGCAAGAGCAAG
GCCGAGTTCGAGAAAGCCGAGGTTTGTTCTGCTGCCGTACATATGTATGC
TGTGGCTCTGCCACTCCCACTCCCGTGTGCTTTAAAGCTCCGGGGTCTTC
TTCGTTTGCTGTAGCCTTGGCGAGCGCTGACCCTGGACGATGACTCTTGG
TAGAGCAGTGCTTTGAACCGCTCCAGGCAACAGTCGCGTGTTTCAGATCG
TGAAGCGTTCTCTGGTATTGGTTCTCGTGGTTGATCTGTTTCTGAGTCTC
CCTTCCTCCTTTGCCATTCACTCGGCGGCCGCACTCCGCCCGATTCGGCG
TCTGCGTGCTCGCCTCTGCTTTTTTGCGGGATCAAACCTCCCCGGTTTCG
TGCTGGTGACTCGATGAAACGGTCGCGGACCTTCGTGTGTCGCAACCTTC
CGTGTCCTGCCGTTTATGGTATGATGCAGCGGAAGAGGTCAGTAGGGACG
ACAGAGGAAGAGGACCGGGTGCTGAGCATTCTGAAGAAGCGGGAGCGGGA
GCAGCGAGAGAGAGAAAGGTGAAGGAAGTGACCGGGGGCGGGGATATTTT
TTCCTTTTTGGTGCGTCCCCGTCATTTTCGGGTCATTTGGCAGCACGTCT
TTGAATCTTGAGACGCCGCGTTCTCTGCTGTTCGCCCGCGCGTTTCAGGG
CTCCGCCTCTGCTACTTATTTGAGCGGCGGCCAAGCGTTGGGGTGGGGAG
TTGGCCACAGGCGTGTTCTCGTATTCGCGCGTGGATTTCCTGCTTTTTTT
TCAAAGTGGACGCACAGTGAATCCCAAACGACCCATCGGCCTGTCGCCTT
TCGCCTTTTGACCTGGCCGTTGCTTTTGTGCTTGCGACCTGTACGGCCGT
GCCATGTACACCAACCAGGGCGTCGCAACCACGGAAACGCCTGAAGAAGA
AGGCGTCCGCCCCGAACCCGCTGTCGGCGAAAAAGAGCAGCAGCTCCAGC
GGGAAGGCGGGAGGCGGAGGCGGAGGGGGTGCCAAAGCGAACGCAAGCCC
CGCGTCCAGCTCGGGAGCGGGGGGGAACCGCGTGAGGAGAAAGCGAAAAA
AATCGTCGCGATCGCCCGGGGGCGGAGGAGAAGCCGGGGGAGCGGCTGGC
AGTGGGTAGTGGACGCGCTAGGGTGTCGTTTGGCGTACTTGGGCGAGGTG
TGGGCGCGAGAGATCATTGGTCCGGGAGGGGAGAAGGTTCGGTGACAATG
CCAATTTTTTCTGTGGGCATTTCATTGTCCCCATTGTTCCCCGGACGTTG
GGCGCTGCTGAGACGGAGGTGTGTGTAACGGACTGGACCAACCGCCGGGT
GCTTTTTCGCGGTGGTGTTAAACGATGTGATGTGTTCGTGGTGGTATTCA
TTGTGACTTTCGGCCCATCCGTGATGGCTTTACTTTGTACCCACAACGTT
TGTCGCGGTCATAGTCCTGTCAGCTCGCGCTCTGACGCCTTGTTTGGCAC
CTCCTGCACCTGGCTTAGTGTGAAAGCGCCTCGAAGTGGAGGCCGTTCTC
TCAATAGAAGCGTTGATGAATTGTTTGGTGCGTCTCTAGGCGGAAACTTA
AGGATTCCACGGCCCAAAGGGTACACGCGGGGTGCGGACTATTTATTCTC
CAAGCAACACAGAGTTGAGGCGCCCTTGAGGCGCCCTTAAAAAGGGCGCA
GCTAGTTCTGCACGCGTCAAGGTTCATTCCGTTCAAGTGGAACAAAA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3669512..3674658-

>mRNA_C-linearis_contig11.1420.1 ID=mRNA_C-linearis_contig11.1420.1|Name=mRNA_C-linearis_contig11.1420.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at C-linearis_contig11:3669512..3674658- (Chordaria linearis ClinC8C monoicous)
ATGAGGGTCACGCGGGCGAAGCAGTACCGGAGACACCTGCGGTTCTTTCG
GATCGTGTACGGGATTTCGGCTCCGTACAAGATGAGGGTCACGCGGGCGA
AGCAGTACCGGAGACACCTGCGGTTCTTTCGGATCGTGTACGGGATTTCG
GCTCCGTACAAGGTCATTCTCGACGGAAATTTCATCCACGGCTGCATCTC
ATCAAATGTCGACATCGAGCAGCGATTGGCCAGCGTCTTGCAGGTCATTC
TCGACGGAAATTTCATCCACGGCTGCATCTCATCAAATGTCGACATCGAG
CAGCGATTGGCCAGCGTCTTGCAGGGAGCATCGATGCACCTGTATGTCCC
GAGGAGCGCGAGGGAGGAGCTCAAGGCGCTAGGTCCAGAGTTCAAGAAGG
CGTATAATGGAGCATCGATGCACCTGTATGTCCCGAGGAGCGCGAGGGAG
GAGCTCAAGGCGCTAGGTCCAGAGTTCAAGAAGGCGTATAATTTCGCGAT
AGGGCGCTGCAGAGGGCTCCCCCTTCCCCCAAACCATACCCCGGCGGCGG
CAGGGACGGATGAAGAGGGGGGTGCGGACGAGGGGGAAGGCGCGGCGGAG
AAAGGCCCGGATCCGACAAAAGAGATCATTGCGACGATAGGAGCGGCCAA
CGAGGGGAAGTACCTGGTCGCGTCTCAGTTCGCGATAGGGCGCTGCAGAG
GGCTCCCCCTTCCCCCAAACCATACCCCGGCGGCGGCAGGGACGGATGAA
GAGGGGGGTGCGGACGAGGGGGAAGGCGCGGCGGAGAAAGGCCCGGATCC
GACAAAAGAGATCATTGCGACGATAGGAGCGGCCAACGAGGGGAAGTACC
TGGTCGCGTCTCAGGACGAGAACCTCCGCGCACGCCTGCGGCGGGTGCCC
GGGTGCCCCCTGGTGTTTGTGTCGCGGACGGTGCTGGTGATGGAGCAGCC
GTCGGGCAAGAGCAAGGCCGAGTTCGAGAAAGCCGAGGACGAGAACCTCC
GCGCACGCCTGCGGCGGGTGCCCGGGTGCCCCCTGGTGTTTGTGTCGCGG
ACGGTGCTGGTGATGGAGCAGCCGTCGGGCAAGAGCAAGGCCGAGTTCGA
GAAAGCCGAGCGGAAGAGGTCAGTAGGGACGACAGAGGAAGAGGACCGGG
TGCTGAGCATTCTGAAGAAGCGGGAGCGGGAGCAGCGAGAGAGAGAAAGC
GGAAGAGGTCAGTAGGGACGACAGAGGAAGAGGACCGGGTGCTGAGCATT
CTGAAGAAGCGGGAGCGGGAGCAGCGAGAGAGAGAAAGGGCGTCGCAACC
ACGGAAACGCCTGAAGAAGAAGGCGTCCGCCCCGAACCCGCTGTCGGCGA
AAAAGAGCAGCAGCTCCAGCGGGAAGGCGGGAGGCGGAGGCGGAGGGGGT
GCCAAAGCGAACGCAAGCCCCGCGTCCAGCTCGGGAGCGGGGGGGAACCG
CGTGAGGAGAAAGCGAAAAAAATCGTCGCGATCGCCCGGGGGCGGAGGAG
AAGCCGGGGGAGCGGCTGGCAGTGGGTAGGGCGTCGCAACCACGGAAACG
CCTGAAGAAGAAGGCGTCCGCCCCGAACCCGCTGTCGGCGAAAAAGAGCA
GCAGCTCCAGCGGGAAGGCGGGAGGCGGAGGCGGAGGGGGTGCCAAAGCG
AACGCAAGCCCCGCGTCCAGCTCGGGAGCGGGGGGGAACCGCGTGAGGAG
AAAGCGAAAAAAATCGTCGCGATCGCCCGGGGGCGGAGGAGAAGCCGGGG
GAGCGGCTGGCAGTGGGTAG
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