mRNA_C-linearis_contig11.1413.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1413.1
Unique NamemRNA_C-linearis_contig11.1413.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3642647..3644119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size318
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1413.1prot_C-linearis_contig11.1413.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3642648..3644119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927427.6923146-CDS-C-linearis_contig11:3642647..36427691622927427.6923146-CDS-C-linearis_contig11:3642647..3642769Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3642648..3642769 -
1690879694.296383-CDS-C-linearis_contig11:3642647..36427691690879694.296383-CDS-C-linearis_contig11:3642647..3642769Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3642648..3642769 -
1622927427.7101977-CDS-C-linearis_contig11:3643201..36433251622927427.7101977-CDS-C-linearis_contig11:3643201..3643325Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3643202..3643325 -
1690879694.3048017-CDS-C-linearis_contig11:3643201..36433251690879694.3048017-CDS-C-linearis_contig11:3643201..3643325Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3643202..3643325 -
1622927427.7217472-CDS-C-linearis_contig11:3644050..36441191622927427.7217472-CDS-C-linearis_contig11:3644050..3644119Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3644051..3644119 -
1690879694.3128767-CDS-C-linearis_contig11:3644050..36441191690879694.3128767-CDS-C-linearis_contig11:3644050..3644119Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3644051..3644119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1413.1

>prot_C-linearis_contig11.1413.1 ID=prot_C-linearis_contig11.1413.1|Name=mRNA_C-linearis_contig11.1413.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=105bp
GVFAAALRGGGESEAAHVALTAQALARNWNEALIPTGRGPSFGGGGCSNY
GGSVAGSVNGGRNGGGGSLHGFGPRRSSSRRPPGWEAGGPSRASSVSGDG
LRGAG
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mRNA from alignment at C-linearis_contig11:3642647..3644119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1413.1 ID=mRNA_C-linearis_contig11.1413.1|Name=mRNA_C-linearis_contig11.1413.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1473bp|location=Sequence derived from alignment at C-linearis_contig11:3642647..3644119- (Chordaria linearis ClinC8C monoicous)
GGCGTATTCGCGGCGGCTCTTCGCGGTGGGGGTGAGAGCGAGGCGGCGCA
CGTAGCTCTCACGGCACAGGTGCGACCGCGTCCTGTTTTTTTGGTGTGTG
TGCGTGGGTTTTCTATTGTTGTGCGAGTCGTCAGTCGTCTTGTTGTGTGC
CGTGCGCGTGTGCGCGATGAGGTACAGAGGTCGTCCTTTGTGGTGTGTTT
TTGCGTGTGCATCCAAAACTAAACTTTCGTAGGTTGTACTCGCTCACTTG
TTGCGTTTGCCCCGGGCCGGGTCGAGTCGCGTCGGTCTGGCCGCCGTTTG
TTTGTTGTCTTCGCGCGCGCTCGGCAGCAGTGTTCGGCGGCAAGTCTGAG
TTGCGAAAAGCTGAGGGGAAAGCCAATCTCCCACGGGGAGAACTTCCCCT
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGTTTTACGTTAATCC
GCCATTCGCAACTCTCTTTATTTCGCCGCTGCATGTACTTGTACAACCTT
CTTTTTTTTTCCTCGCCCATTAATGTTTTTTCGCAGCCTGCCTCCCTCCT
CTTCGCTACAACTAGCTAGGCTACCATCCGAGGTCACACAAGGAGGGGAT
GTCTCCACCTACCTCCTGCGGTGATCCAAACTATATACCACGCTGATGTT
TCATCGTCTGGTGCACCACGCCCACTGCCGGTGTGGCCTCCGTCTGCCCC
CCCCCCTGTGCCGCTTACCGGTATGTGCCTACTTGATTTTTGTTTTCTTC
GACGTTATCGGTTATGTAACGGCGTGTTTGCTGTGTCTTGCCAGGCACTC
GCGCGGAACTGGAACGAAGCACTTATCCCAACCGGGAGAGGTCCGAGCTT
TGGAGGTGGCGGCTGCAGCAACTACGGCGGGAGCGTGGCGGGCTCCGTCA
ACGGAGGGCGCAATGGGGGTGAGTGAGAGCGGTGGGTGCATCGTGAAAGA
TCATCGTCGGTGATTTGGTTGGCCCGTGGGTCTAGACACGGAATGTCAAT
GATGTTTTTTGCTGGAAAATGTGGTGGAATTCCTGGCGCTGGTGGTGTGT
GGGCGAGTGTGTGGGCGGGTGGGGTTGGCTGGCTGTCAAACGACGATTAT
CCGGGAGTTGTGCTAGGCGCCGCTGTGCCGTGACGATCGGCGAACAAATG
TACGTGACACAGACTCAAGGTGTAGACACCAGTGCTTTGAGTCGACACAA
GCTGGGCGACCACCCACTCCATCTCTCTTTCCCTCTCTCTCTCTTCTCTC
TCTCTCTTCCTCCTCCGTCGACTCACCCCCTCCCCTGGCCGTCGACTTCT
CAAGCCTTTTACCGCTTCGCTCCCTGCCCGTTGTGCTCTCTGCATAAAAG
GTGGCGGAAGCCTTCACGGGTTTGGTCCCCGGCGATCGAGCAGCCGGCGC
CCCCCAGGGTGGGAGGCAGGAGGGCCGAGCCGGGCATCGAGCGTGTCGGG
GGACGGTCTGCGCGGAGCGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig11:3642647..3644119-

>mRNA_C-linearis_contig11.1413.1 ID=mRNA_C-linearis_contig11.1413.1|Name=mRNA_C-linearis_contig11.1413.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at C-linearis_contig11:3642647..3644119- (Chordaria linearis ClinC8C monoicous)
GGCGTATTCGCGGCGGCTCTTCGCGGTGGGGGTGAGAGCGAGGCGGCGCA
CGTAGCTCTCACGGCACAGGGCGTATTCGCGGCGGCTCTTCGCGGTGGGG
GTGAGAGCGAGGCGGCGCACGTAGCTCTCACGGCACAGGCACTCGCGCGG
AACTGGAACGAAGCACTTATCCCAACCGGGAGAGGTCCGAGCTTTGGAGG
TGGCGGCTGCAGCAACTACGGCGGGAGCGTGGCGGGCTCCGTCAACGGAG
GGCGCAATGGGGGCACTCGCGCGGAACTGGAACGAAGCACTTATCCCAAC
CGGGAGAGGTCCGAGCTTTGGAGGTGGCGGCTGCAGCAACTACGGCGGGA
GCGTGGCGGGCTCCGTCAACGGAGGGCGCAATGGGGGTGGCGGAAGCCTT
CACGGGTTTGGTCCCCGGCGATCGAGCAGCCGGCGCCCCCCAGGGTGGGA
GGCAGGAGGGCCGAGCCGGGCATCGAGCGTGTCGGGGGACGGTCTGCGCG
GAGCGGGGGTGGCGGAAGCCTTCACGGGTTTGGTCCCCGGCGATCGAGCA
GCCGGCGCCCCCCAGGGTGGGAGGCAGGAGGGCCGAGCCGGGCATCGAGC
GTGTCGGGGGACGGTCTGCGCGGAGCGGGG
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