mRNA_C-linearis_contig11.1412.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1412.1
Unique NamemRNA_C-linearis_contig11.1412.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1412.1 vs. uniprot
Match: D8LKH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH3_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 3.660e-40
Identity = 97/185 (52.43%), Postives = 111/185 (60.00%), Query Frame = 2 
Query:  752 LNHVEAYHHLASKGNFEAVKRTLLEKEDALTKGTGSLLMAHTIERFRGGSARGPATGEHPERRRSQRPVTGKPLFSRASRGTATESDPFQPGSCNADTLRRQRARRQDLLVQAKTRNTVFLRRKGYEPGDFLKHRVT----DNNRG-------------GGREISARSAAXXXXXXEAQRKAHRH 1255
            +NH EAY + A KGNFEA KRTLLEKEDAL KGTGS LMA TI+RFR  S   P T +   RR SQR    +    RA      ESDPFQ G  N++ L+R+  RRQDLLV AK RN +F RRKGYEPGDFLKHR      D N G             G R+  ARSA       E++RKAH+H
Sbjct:    1 MNHQEAYRYTAGKGNFEAEKRTLLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTSDLSARRGSQR---RRAAAKRAM--VPIESDPFQCGGYNSEKLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPGGQDFNSGAASCRRGSVGGAIGARKGGARSAEAAAMAAESRRKAHQH 180
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKH3_ECTSI3.660e-4052.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3637513..3640730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002960.1
Exons6
Model size1319
Cds size1206
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1412.1prot_C-linearis_contig11.1412.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3637607..3640711 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927470.9040954-UTR-C-linearis_contig11:3637512..36376061622927470.9040954-UTR-C-linearis_contig11:3637512..3637606Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3637513..3637606 +
1690879720.3494494-UTR-C-linearis_contig11:3637512..36376061690879720.3494494-UTR-C-linearis_contig11:3637512..3637606Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3637513..3637606 +
1622927470.9803588-UTR-C-linearis_contig11:3640711..36407301622927470.9803588-UTR-C-linearis_contig11:3640711..3640730Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3640712..3640730 +
1690879720.4185038-UTR-C-linearis_contig11:3640711..36407301690879720.4185038-UTR-C-linearis_contig11:3640711..3640730Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3640712..3640730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927470.9159408-CDS-C-linearis_contig11:3637606..36381091622927470.9159408-CDS-C-linearis_contig11:3637606..3638109Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3637607..3638109 +
1690879720.3600807-CDS-C-linearis_contig11:3637606..36381091690879720.3600807-CDS-C-linearis_contig11:3637606..3638109Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3637607..3638109 +
1622927470.9276972-CDS-C-linearis_contig11:3638476..36386691622927470.9276972-CDS-C-linearis_contig11:3638476..3638669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3638477..3638669 +
1690879720.3680253-CDS-C-linearis_contig11:3638476..36386691690879720.3680253-CDS-C-linearis_contig11:3638476..3638669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3638477..3638669 +
1622927470.9395244-CDS-C-linearis_contig11:3638953..36390281622927470.9395244-CDS-C-linearis_contig11:3638953..3639028Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3638954..3639028 +
1690879720.3760846-CDS-C-linearis_contig11:3638953..36390281690879720.3760846-CDS-C-linearis_contig11:3638953..3639028Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3638954..3639028 +
1622927470.9492104-CDS-C-linearis_contig11:3639330..36394161622927470.9492104-CDS-C-linearis_contig11:3639330..3639416Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3639331..3639416 +
1690879720.3843114-CDS-C-linearis_contig11:3639330..36394161690879720.3843114-CDS-C-linearis_contig11:3639330..3639416Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3639331..3639416 +
1622927470.9610727-CDS-C-linearis_contig11:3639993..36401671622927470.9610727-CDS-C-linearis_contig11:3639993..3640167Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3639994..3640167 +
1690879720.3949106-CDS-C-linearis_contig11:3639993..36401671690879720.3949106-CDS-C-linearis_contig11:3639993..3640167Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3639994..3640167 +
1622927470.969708-CDS-C-linearis_contig11:3640536..36407111622927470.969708-CDS-C-linearis_contig11:3640536..3640711Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3640537..3640711 +
1690879720.4102106-CDS-C-linearis_contig11:3640536..36407111690879720.4102106-CDS-C-linearis_contig11:3640536..3640711Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3640537..3640711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1412.1

>prot_C-linearis_contig11.1412.1 ID=prot_C-linearis_contig11.1412.1|Name=mRNA_C-linearis_contig11.1412.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=402bp
MYRPSSRVADEVDQVGGASEVVTAPCLHASDATESARLVMVQQRRPMTSD
GGASQRQKLQRRRGLGAGRIGASSTVNDAMGGQLRPSTSVGGRRRPPAVS
HGGFDTGRVASSSNAPGIEGNCEQQREQQQKSRKPPNQEERLLQEETKRR
QQILAVPSTSNVNRFEPRPTQNGAGTRRGDNDPSPNKYWPTPGGAKEFLR
PFIERNQRRLWAYDPALVGLNHVEAYHHLASKGNFEAVKRTLLEKEDALT
KGTGSLLMAHTIERFRGGSARGPATGEHPERRRSQRPVTGKPLFSRASRG
TATESDPFQPGSCNADTLRRQRARRQDLLVQAKTRNTVFLRRKGYEPGDF
LKHRVTDNNRGGGREISARSAAAASAAAEAQRKAHRHREGGQRVLREREK
D*
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mRNA from alignment at C-linearis_contig11:3637513..3640730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1412.1 ID=mRNA_C-linearis_contig11.1412.1|Name=mRNA_C-linearis_contig11.1412.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3218bp|location=Sequence derived from alignment at C-linearis_contig11:3637513..3640730+ (Chordaria linearis ClinC8C monoicous)
GGACGTCAGAGGAGGGGGAATCGGCAGCCTGAAAAATGGACCTTATCAGC
AGAGGGATGCATCCTTGCGTCCGCACACAGCTGATGCTGCATTGATGTAT
CGACCCAGCAGCAGAGTGGCAGATGAAGTAGATCAAGTAGGCGGTGCATC
TGAGGTCGTCACTGCACCGTGCCTCCATGCCTCCGACGCAACCGAATCGG
CACGATTGGTGATGGTTCAACAACGCCGTCCGATGACCTCTGACGGCGGT
GCGTCGCAGCGGCAGAAGCTTCAGCGTCGTCGTGGTCTAGGCGCGGGGCG
CATTGGCGCCAGCAGCACTGTCAACGACGCTATGGGTGGGCAGTTGAGGC
CGTCGACCTCGGTCGGGGGCAGGAGGCGACCGCCTGCCGTGTCCCACGGT
GGATTCGACACGGGGAGGGTAGCGTCCAGTTCGAATGCTCCTGGCATAGA
GGGAAATTGCGAGCAACAACGGGAGCAGCAGCAGAAGTCACGGAAGCCGC
CCAACCAGGAGGAACGTTTGCTTCAAGAAGAAACGAAACGACGGCAGCAG
ATCTTAGCTGTTCCGAGCACCAGCAACGTGAATAGGTTCGAGCCAAGGTG
AACATACACAAAAACCTTGGTATGCCATCTATTTCAAGGTTTGTTCTCCC
TGCAAGTTCCCGTTCTGCACTGCTCACCTAGCATCTTGCCCATTAACGTG
TGACGGTCACCAAAAGGTGAATGCAAGAAGTAGGTATAATGCGGATGTTG
CATGTTTCCACAACACCTCCAATTTATTCGCAGAATCCAAGTGATCTCTC
TACTCTTGTGCTGTTGTGCCAAGATACAACAGATCCTTTGTACTCTCTTG
TAAAATCTGCTACGACTTGGTCCGGCTCTTTGGCAATGACCTACAGCAGT
ACAATAGCACCGAGCCGATTCGACGACCTCTTTGCTGGGTACCTGTCCGA
ACACCTGTTTCCAGACCAACGCAGAACGGCGCGGGGACCCGGAGGGGAGA
CAACGACCCGTCGCCTAACAAGTACTGGCCGACACCAGGCGGCGCCAAAG
AATTCCTCCGCCCGTTCATCGAGAGAAACCAGAGGCGCCTTTGGGCCTAC
GACCCTGCCTTGGTCGGGTTGAACCACGTGGAAGCCTACCACCATCTAGC
GAGCAAGGTGAGTTGCGTTTTGTTTCGCTCGACGAAAACTATGGCGCAAA
AAAAAAAAAACTCCGGTTTGCAGGTTAATTGCGGTGGGATGTTGCTGTGT
AGATTTCAATACAATCGTCTACACTTCCGCCGTAACGTAGTTGTTTGCTA
GAGGGCGACCTTTGAAAACAGGAAGTACGGGGACCCCTCATCTCTTTCTA
TGTCCTTCTTCATAGCTTAGCCTCAGCCGGAAGCTTCGCCCCCCCCTGCT
CCTCGATGCACTCTGCAACGAACGGGGTGTAAACCTTGAAGGGGAACTTC
GAGGCGGTCAAGCGCACACTTTTGGAGAAGGAAGATGCCTTGACGAAAGG
AACGGGTTCGCTGCTGGTGAGTATCCTCCCCTTACCCCGGCGTTGAAGTC
GAGTCTGGTCTCCTGTGTCTCCAGCCAACTCCGCGAACTCCGCGCTTGAT
ACCACGGTTGATTGCCAGACCATCGTTTGCCGTTGTTGAGAGTTTAGACG
AAACGGGCATTTTTATGGTCTCGAGCAGTTTTTTTGTGGTTCAGACAGGG
AAGCACTTCATTCAGTCAAAGCTGTGAGGGCGTACCTAACCCCCGCAGCC
CCCCCCCTCCCACAAACTCGCCGAACAAACCCGCCCATGGATGCTACATT
CGTTGCCACCTCGAGCAGATGGCGCACACCATCGAGCGATTCCGAGGAGG
CTCGGCGAGAGGACCAGCGACCGGTGAACATCCCGAGAGAAGACGAAGCC
AAAGGTCTAGGCTGTACTGTTATCGTAATTTTGTCAATCTGCAATAGGTT
GCACACTACTCTGTAGTGCTATTGTTTGTTCGGTCGGACAGACGAATGAA
TACTGGTGTCCAGCTCCCGAAGGAGGCGAGGGTAGTCGTGTACACGGAGG
CAAGGGGGGGGGCGACTTCCGTTCCACCTCTATCTTTGCCCGAGGTCGCA
CGAAAGCATTTAACGCTTGCGGTCGTTGAAAAGGGGTTTGAAGAGCACAC
CATATCCACAGCAGCAGTTGCCCGCGCCGCACAACCCCTCTTCCTGCGAT
TCACTCGTTGTTTGAAGGCACTCCCCACCATTATTTTATTTTCTGAATCG
GGGCGGGGCGACTTTGTGAGCTTGCTGCTTGTTGTGATATACTTCGAAGT
ACGTCGGCCGTCGCCAAAAAATTAATAGATGTGACCGGCTTATTCCATCC
GTAGTCTAGAAGCAAAATCCATTTGATCCTCGAAGACACGGAGCATCAAC
ACGAAGCATGCATTCCAAAGCCGTTACACCAGTAGTAATCTACGAGAGCC
TAAACAAGCTTTTGTTTCGCCCCGCCAATAGGCCGGTGACGGGGAAACCC
CTTTTTTCGAGGGCTAGCAGGGGGACGGCTACGGAGTCAGACCCGTTCCA
GCCCGGGAGTTGCAATGCCGATACGCTTAGGAGACAGAGGGCGAGGAGGC
AAGATCTGCTCGTGCAAGCCAAGACGAGGAACACCGTTTTCTTGAGGAGA
AAGGGGTAAGGAAGAGCGACAGGTCGCGCAAAGCAAGCAAGCAAGCGAGT
ATTTCTAAAGGCAAGAGTCTCCGTTGGAAAGGGGATGAGGGGGGCGAATA
GATATCGAACCGAGTGTTGCCTTCACTCTAGCCTGTGCGCGGCGCCGAAA
TTCCGGTTCGCACTTGTCCGCGTTTTCCGCTCCTCGAGATTTGAGACGCC
TCTTCGAAAGTGCTGTCCATCGCTGCCGCTGCAGAGTGAAGATAAACTTG
CGGAAGTCACGACACACGCAGCGAGGGCGTGTTTCACAGTGTCTTGTGCC
TCTTGAGATGTGGTGCAAAGCAGTAAAATCTTCTTCGTACAATGGCGTGT
CGTGTGCTCCGGAACAACATGCAGGTACGAGCCCGGCGATTTCCTCAAGC
ACCGTGTCACCGACAACAACAGGGGCGGCGGCAGGGAGATCTCCGCTCGT
TCTGCCGCCGCCGCTTCCGCTGCCGCAGAGGCTCAGCGGAAAGCGCACCG
CCACAGAGAGGGGGGGCAGCGGGTGCTGCGCGAAAGAGAAAAGGATTAAA
AAAAAATGCTGATCGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig11:3637513..3640730+

>mRNA_C-linearis_contig11.1412.1 ID=mRNA_C-linearis_contig11.1412.1|Name=mRNA_C-linearis_contig11.1412.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2412bp|location=Sequence derived from alignment at C-linearis_contig11:3637513..3640730+ (Chordaria linearis ClinC8C monoicous)
ATGTATCGACCCAGCAGCAGAGTGGCAGATGAAGTAGATCAAGTAGGCGG
TGCATCTGAGGTCGTCACTGCACCGTGCCTCCATGCCTCCGACGCAACCG
AATCGGCACGATTGGTGATGGTTCAACAACGCCGTCCGATGACCTCTGAC
GGCGGTGCGTCGCAGCGGCAGAAGCTTCAGCGTCGTCGTGGTCTAGGCGC
GGGGCGCATTGGCGCCAGCAGCACTGTCAACGACGCTATGGGTGGGCAGT
TGAGGCCGTCGACCTCGGTCGGGGGCAGGAGGCGACCGCCTGCCGTGTCC
CACGGTGGATTCGACACGGGGAGGGTAGCGTCCAGTTCGAATGCTCCTGG
CATAGAGGGAAATTGCGAGCAACAACGGGAGCAGCAGCAGAAGTCACGGA
AGCCGCCCAACCAGGAGGAACGTTTGCTTCAAGAAGAAACGAAACGACGG
CAGCAGATCTTAGCTGTTCCGAGCACCAGCAACGTGAATAGGTTCGAGCC
AAGATGTATCGACCCAGCAGCAGAGTGGCAGATGAAGTAGATCAAGTAGG
CGGTGCATCTGAGGTCGTCACTGCACCGTGCCTCCATGCCTCCGACGCAA
CCGAATCGGCACGATTGGTGATGGTTCAACAACGCCGTCCGATGACCTCT
GACGGCGGTGCGTCGCAGCGGCAGAAGCTTCAGCGTCGTCGTGGTCTAGG
CGCGGGGCGCATTGGCGCCAGCAGCACTGTCAACGACGCTATGGGTGGGC
AGTTGAGGCCGTCGACCTCGGTCGGGGGCAGGAGGCGACCGCCTGCCGTG
TCCCACGGTGGATTCGACACGGGGAGGGTAGCGTCCAGTTCGAATGCTCC
TGGCATAGAGGGAAATTGCGAGCAACAACGGGAGCAGCAGCAGAAGTCAC
GGAAGCCGCCCAACCAGGAGGAACGTTTGCTTCAAGAAGAAACGAAACGA
CGGCAGCAGATCTTAGCTGTTCCGAGCACCAGCAACGTGAATAGGTTCGA
GCCAAGACCAACGCAGAACGGCGCGGGGACCCGGAGGGGAGACAACGACC
CGTCGCCTAACAAGTACTGGCCGACACCAGGCGGCGCCAAAGAATTCCTC
CGCCCGTTCATCGAGAGAAACCAGAGGCGCCTTTGGGCCTACGACCCTGC
CTTGGTCGGGTTGAACCACGTGGAAGCCTACCACCATCTAGCGAGCAAGA
CCAACGCAGAACGGCGCGGGGACCCGGAGGGGAGACAACGACCCGTCGCC
TAACAAGTACTGGCCGACACCAGGCGGCGCCAAAGAATTCCTCCGCCCGT
TCATCGAGAGAAACCAGAGGCGCCTTTGGGCCTACGACCCTGCCTTGGTC
GGGTTGAACCACGTGGAAGCCTACCACCATCTAGCGAGCAAGGGGAACTT
CGAGGCGGTCAAGCGCACACTTTTGGAGAAGGAAGATGCCTTGACGAAAG
GAACGGGTTCGCTGCTGGGGAACTTCGAGGCGGTCAAGCGCACACTTTTG
GAGAAGGAAGATGCCTTGACGAAAGGAACGGGTTCGCTGCTGATGGCGCA
CACCATCGAGCGATTCCGAGGAGGCTCGGCGAGAGGACCAGCGACCGGTG
AACATCCCGAGAGAAGACGAAGCCAAAGATGGCGCACACCATCGAGCGAT
TCCGAGGAGGCTCGGCGAGAGGACCAGCGACCGGTGAACATCCCGAGAGA
AGACGAAGCCAAAGGCCGGTGACGGGGAAACCCCTTTTTTCGAGGGCTAG
CAGGGGGACGGCTACGGAGTCAGACCCGTTCCAGCCCGGGAGTTGCAATG
CCGATACGCTTAGGAGACAGAGGGCGAGGAGGCAAGATCTGCTCGTGCAA
GCCAAGACGAGGAACACCGTTTTCTTGAGGAGAAAGGGGCCGGTGACGGG
GAAACCCCTTTTTTCGAGGGCTAGCAGGGGGACGGCTACGGAGTCAGACC
CGTTCCAGCCCGGGAGTTGCAATGCCGATACGCTTAGGAGACAGAGGGCG
AGGAGGCAAGATCTGCTCGTGCAAGCCAAGACGAGGAACACCGTTTTCTT
GAGGAGAAAGGGGTACGAGCCCGGCGATTTCCTCAAGCACCGTGTCACCG
ACAACAACAGGGGCGGCGGCAGGGAGATCTCCGCTCGTTCTGCCGCCGCC
GCTTCCGCTGCCGCAGAGGCTCAGCGGAAAGCGCACCGCCACAGAGAGGG
GGGGCAGCGGGTGCTGCGCGAAAGAGAAAAGGATTAAGTACGAGCCCGGC
GATTTCCTCAAGCACCGTGTCACCGACAACAACAGGGGCGGCGGCAGGGA
GATCTCCGCTCGTTCTGCCGCCGCCGCTTCCGCTGCCGCAGAGGCTCAGC
GGAAAGCGCACCGCCACAGAGAGGGGGGGCAGCGGGTGCTGCGCGAAAGA
GAAAAGGATTAA
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