mRNA_C-linearis_contig11.1411.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1411.1
Unique NamemRNA_C-linearis_contig11.1411.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: D8LKH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH4_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 2.290e-100
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 1
Query:    1 MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAQVDRFPVCFRSSLGGRVYRHIILAVRSGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVM 483
            MRGKLK IQ+YITSLEYNYTGE FFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMA+VDRFPVCFRSSL GRVYRHI+LAVRSG  WG+LGLSRRD LMYKELKY LFS+L+GDFR+SYA SWHRLE +WVGFPLPHDISSNV +KWKV+
Sbjct:    1 MRGKLKHIQSYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDKLMYKELKYDLFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVL 161          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: A0A6H5JJ50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ50_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 8.270e-84
Identity = 127/175 (72.57%), Postives = 137/175 (78.29%), Query Frame = 1
Query:   49 YNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAQ------------------------------VDRFPVCFRSSLGGRVYRHIILAVRSGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVM 483
            YNYTGE FFVKKKDRGFRHVTSTAK IIREALPIQCVEAVFVGAYLTADMA+                              VDRFPVCFRSSL GRVYRHI+LAVRSG  WG+LGLSRRDTLMYKELKY+LFS+L+GDFR+SYA +WHRLE +WVGFPLPHDISSNV VKWKV+
Sbjct:    5 YNYTGEAFFVKKKDRGFRHVTSTAKQIIREALPIQCVEAVFVGAYLTADMAEAGPLFFQTLADSSTLSPYLRRFLLPGYMVGVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASNWHRLEQVWVGFPLPHDISSNVAVKWKVL 179          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: A0A835YRP7_9STRA (Vasohibin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP7_9STRA)

HSP 1 Score: 190 bits (483), Expect = 5.020e-58
Identity = 87/160 (54.37%), Postives = 117/160 (73.12%), Query Frame = 1
Query:    1 MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAQVDRFPVCFRSSLGGRVYRHIILAVRSGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKV 480
            +R KLK +Q YI + EYN+TG+ ++  KK RGF HV + A+ I+REALPIQCVEA F+GAYLT D+  V+R+P+ F+S+L G  +RHI+LAV SG  WGALG+SRRD L YKELKY     L+ +F  +Y   WH+L+ I++G PLP + S N P++WKV
Sbjct:   31 LRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 190          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: A0A1W0A7K4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7K4_9STRA)

HSP 1 Score: 185 bits (469), Expect = 4.500e-53
Identity = 95/210 (45.24%), Postives = 128/210 (60.95%), Query Frame = 1
Query:    1 MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTAD----------MAQVDRFPVCFRSSLGGRVYRHIILAVRSGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVMRANVGTGAEWSSAAPNLDCFVACASTLFERFSTTGKMPD 600
            +R KL  IQ Y+ +LEYNYTG+ +F   K R ++ +  TAK II E+LPIQC+EAVFV AYLTA+            QVDR P+ F+S  GG V+RHI+L ++   +WGALGLSR   LM KELKYK FSEL+ D+ + +A   H +  I+VGFP  HDI S+  V+W+V+   + +   W + A   D F    S L       G++PD
Sbjct:   38 VRSKLHAIQTYLNALEYNYTGKLYFNVNKHRSYKSIYGTAKEIIHESLPIQCLEAVFVAAYLTANGNTEYEGMNPNQQVDRVPISFKSRSGGTVFRHIVLGIKHQHMWGALGLSRNADLMNKELKYKNFSELLADYIEHFAKCCHEVTKIYVGFPFSHDIHSSEKVQWRVLNIKI-SDHPWDAVAAQFDLFTREHSELMSHLHRVGELPD 246          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: A0A2D4BXV4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV4_PYTIN)

HSP 1 Score: 184 bits (466), Expect = 6.090e-53
Identity = 93/200 (46.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query:    1 MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAQVDRFPVCFRSSLGGRVYRHIILAVRSGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVMRANVGTGAEWSSAAPNLDCFVACASTLFERFSTTGKMPD 600
            ++ +L  +Q Y+ SLEYNYTG  +F   K+R F+ + +TAK I  E LPIQC+EAVF+ AY+TA+   ++RFP+ F+S  G  V+RHI+LAVR    WGALGLSR + LMYKEL++   SEL  DF   +    H +  + VGFP PHDI S+  V+W+V+   V T  EWS  A +LD     A  L       G MPD
Sbjct:   42 IKTRLMAVQNYLNSLEYNYTGTLYFDVNKNRSFKSIVNTAKEIAAEMLPIQCLEAVFLAAYITANFPDLERFPLSFKSQAGNSVHRHIVLAVRHQNKWGALGLSRSERLMYKELRFNSLSELTQDFCHGFESVCHVVTKLHVGFPFPHDIHSSEKVEWRVLNVPVDT-VEWSHVATHLDAXAKEAGDLLAFRRAKGAMPD 240          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: K3X8V2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8V2_GLOUD)

HSP 1 Score: 181 bits (460), Expect = 6.220e-53
Identity = 93/194 (47.94%), Postives = 127/194 (65.46%), Query Frame = 1
Query:   22 IQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAQVDRFPVCFRSSLGGRVYRHIILAVR-SGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVMRANVGTGAEWSSAAPNLDCFVACASTLFERFSTTGKMPD 600
            IQ  I +LEYNYTG ++F   K+R F+ + STAK I+ E LPIQC+EAVF+ +YLTA+ + ++RFP+ F+S  G  V+RHIILAVR     WGALGLSR D LMYKELKY   SEL+ DF   +   +HR+  ++VGFP  HDI S+  V+W+VM  ++    EW+ AA + D F   A  +     + G +P+
Sbjct:   46 IQHVINTLEYNYTGTQYFDVNKNRSFKSIVSTAKDIVNETLPIQCLEAVFLASYLTANASDLERFPISFKSIAGTNVHRHIILAVRYQHNKWGALGLSRSDKLMYKELKYASLSELIQDFCHEFELLYHRVLKVYVGFPFSHDIHSSEKVEWRVMNISLEFN-EWTDAAQHFDSFAKDAVDILAYKKSKGVLPE 238          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: A0A1V9ZEI7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEI7_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.710e-52
Identity = 92/210 (43.81%), Postives = 129/210 (61.43%), Query Frame = 1
Query:    1 MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTAD----------MAQVDRFPVCFRSSLGGRVYRHIILAVRSGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVMRANVGTGAEWSSAAPNLDCFVACASTLFERFSTTGKMPD 600
            ++ KL  IQAY+++LEYNYTG  +F   K+R ++ +  TAK II EALPIQC+EAVFV AYLTA             Q+DR P+ F+S  G   +RHI+L VR   VWGALGLSR   LM K+LKYK FS+L+ D+ +++    H++  ++VGFP  HDI S+  V+W+V+   +     W + A  +D F   +S L       G++PD
Sbjct:   40 IKAKLHAIQAYLSALEYNYTGRLYFNVNKNRSYKSIYGTAKEIISEALPIQCLEAVFVAAYLTAHGMPEYEGLNPSQQIDRVPISFKSRSGDSTFRHIVLGVRHQHVWGALGLSRSPALMNKDLKYKSFSDLVADYIENFVKCQHQVTKVYVGFPFSHDIHSSEKVQWRVLNIKI-VEHPWEAVAAQIDLFTRESSELMSHLHRVGELPD 248          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: A0A067CTS0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CTS0_SAPPC)

HSP 1 Score: 178 bits (452), Expect = 1.420e-50
Identity = 88/210 (41.90%), Postives = 131/210 (62.38%), Query Frame = 1
Query:    1 MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTAD----------MAQVDRFPVCFRSSLGGRVYRHIILAVRSGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVMRANVGTGAEWSSAAPNLDCFVACASTLFERFSTTGKMPD 600
            ++ KL  +Q Y+ +LEYNYTG+ +F   K R ++ +  TAK I+ EALPIQC+EAVFV AYLTA             Q++R P+ F+S+ GG V+RHI+L V+   +WGALGLSR  +LM K+LKYK FSEL+ D+ ++++   H +  I+VGFP  HDI S+  V+W+V+   +     W + A   D F+  +S +       G++P+
Sbjct:   36 IKTKLHAVQTYLNALEYNYTGKLYFNVNKHRSYKSIYGTAKEIMAEALPIQCLEAVFVAAYLTAHGMPEYEGMNPSHQIERVPISFKSTSGGSVFRHIVLGVKHQHLWGALGLSRNPSLMNKDLKYKHFSELLADYVENFSKCHHTVTKIYVGFPFSHDIHSSEKVQWRVLNIKISEHP-WDAVAGQFDLFLRESSEIMSHLHRVGELPE 244          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: A0A5D6XNG0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNG0_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.600e-50
Identity = 95/201 (47.26%), Postives = 130/201 (64.68%), Query Frame = 1
Query:    1 MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAQVDRFPVCFRSSLGGRVYRHIILAVRSGKV-WGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVMRANVGTGAEWSSAAPNLDCFVACASTLFERFSTTGKMPD 600
            M+ +L  IQ  I++LEYNYTG  +F   K+R F+ + STAK I+ E LPIQC+EAVF+GAYLTA   +++RFP+ F++  GG V+RHI+LAVR     WGALGLSR + LM KELKY   SEL+ DF   +A  +H +  ++ GFP  HDI S+  V+W+VM   +   A W+ AA +LD F   A  +       G++PD
Sbjct:   39 MKTRLAAIQHVISTLEYNYTGTLYFDVTKNRSFKSIVSTAKDILNEVLPIQCLEAVFLGAYLTASAPELERFPISFKTVAGGCVHRHIVLAVRHQHAKWGALGLSRSEKLMAKELKYASLSELVQDFCREFALLFHAVLKVYAGFPFSHDIHSSEKVEWRVMNLPL-EHATWADAAQHLDAFSKEALDILAFKRAKGELPD 238          
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Match: A0A024G7K7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7K7_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.760e-49
Identity = 89/205 (43.41%), Postives = 127/205 (61.95%), Query Frame = 1
Query:    1 MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAQVDRFPVCFRSSLGGRV-YRHIILAVR----SGKVWGALGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVMRANVGTGAEWSSAAPNLDCFVACASTLFERFSTTGKMPD 600
            +R KL +IQAY+ +LEYNYTG  +F   K+R F+ +  TAK++I +ALPIQC+EAVF+ +YLTA + +VDRFPV F S  G +  +RHI+LAVR        WGALGLSR D LMYKE  +   S+L+ D+++S+   +H+L  + +G PL HDI S   V+W+++  ++     W   A  +D F   A  L       G  P+
Sbjct:   40 IRAKLHMIQAYLNALEYNYTGTLYFDTNKNRSFKSIVGTAKVMINDALPIQCLEAVFLASYLTAPLLKVDRFPVSFTSITGEKSKHRHIVLAVRYYENQNANWGALGLSRSDQLMYKEANFSTLSDLLNDYKNSFENVYHQLIKMSIGLPLSHDIHSAEKVQWRMLNVHLDK-TNWKQVARQIDLFARDAVNLVGYKKAQGSFPE 243          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH4_ECTSI2.290e-10087.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ50_9PHAE8.270e-8472.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRP7_9STRA5.020e-5854.38Vasohibin-domain-containing protein n=1 Tax=Tribon... [more]
A0A1W0A7K4_9STRA4.500e-5345.24Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2D4BXV4_PYTIN6.090e-5346.50Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3X8V2_GLOUD6.220e-5347.94Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9ZEI7_9STRA2.710e-5243.81Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CTS0_SAPPC1.420e-5041.90Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A5D6XNG0_9STRA1.600e-5047.26Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024G7K7_9STRA3.760e-4943.41Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3633250..3636411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.4
Seed ortholog evalue5.4e-78
Seed eggNOG ortholog2880.D8LKH4
Preferred nameVASH1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000768,GO:0001525,GO:0001568,GO:0001701,GO:0001890,GO:0001892,GO:0001936,GO:0001937,GO:0001938,GO:0001944,GO:0003006,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006949,GO:0006950,GO:0007275,GO:0008150,GO:0008284,GO:0008285,GO:0009611,GO:0009653,GO:0009790,GO:0009792,GO:0009893,GO:0009987,GO:0010468,GO:0010594,GO:0010596,GO:0010604,GO:0010628,GO:0010632,GO:0010633,GO:0012505,GO:0016043,GO:0016525,GO:0019222,GO:0022414,GO:0022603,GO:0030334,GO:0030336,GO:0032501,GO:0032502,GO:0032879,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043535,GO:0043537,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045026,GO:0045177,GO:0045765,GO:0045766,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050678,GO:0050679,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051271,GO:0060255,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061025,GO:0061458,GO:0065007,GO:0071840,GO:0072358,GO:0072359,GO:0080134,GO:0080135,GO:0090342,GO:1901342,GO:1901343,GO:1901490,GO:1901491,GO:1904018,GO:2000026,GO:2000145,GO:2000146,GO:2000181,GO:2000772
EggNOG free text desc.negative regulation of lymphangiogenesis
EggNOG OGs2BW4P@1,2QPPX@2759
Ec32 ortholog descriptionVasohibin
Ec32 orthologEc-16_002970.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size624
Cds size624
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1411.1prot_C-linearis_contig11.1411.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3633250..3636411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927470.8293655-CDS-C-linearis_contig11:3633249..36333961622927470.8293655-CDS-C-linearis_contig11:3633249..3633396Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3633250..3633396 -
1690879720.282686-CDS-C-linearis_contig11:3633249..36333961690879720.282686-CDS-C-linearis_contig11:3633249..3633396Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3633250..3633396 -
1622927470.8411622-CDS-C-linearis_contig11:3633832..36339651622927470.8411622-CDS-C-linearis_contig11:3633832..3633965Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3633833..3633965 -
1690879720.2929337-CDS-C-linearis_contig11:3633832..36339651690879720.2929337-CDS-C-linearis_contig11:3633832..3633965Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3633833..3633965 -
1622927470.8525236-CDS-C-linearis_contig11:3634301..36344411622927470.8525236-CDS-C-linearis_contig11:3634301..3634441Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3634302..3634441 -
1690879720.3026745-CDS-C-linearis_contig11:3634301..36344411690879720.3026745-CDS-C-linearis_contig11:3634301..3634441Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3634302..3634441 -
1622927470.8646276-CDS-C-linearis_contig11:3635789..36359461622927470.8646276-CDS-C-linearis_contig11:3635789..3635946Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3635790..3635946 -
1690879720.3110666-CDS-C-linearis_contig11:3635789..36359461690879720.3110666-CDS-C-linearis_contig11:3635789..3635946Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3635790..3635946 -
1622927470.8741941-CDS-C-linearis_contig11:3636364..36364111622927470.8741941-CDS-C-linearis_contig11:3636364..3636411Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3636365..3636411 -
1690879720.330437-CDS-C-linearis_contig11:3636364..36364111690879720.330437-CDS-C-linearis_contig11:3636364..3636411Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3636365..3636411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1411.1

>prot_C-linearis_contig11.1411.1 ID=prot_C-linearis_contig11.1411.1|Name=mRNA_C-linearis_contig11.1411.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=208bp
MRGKLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVTSTAKLIIREALPI
QCVEAVFVGAYLTADMAQVDRFPVCFRSSLGGRVYRHIILAVRSGKVWGA
LGLSRRDTLMYKELKYKLFSELMGDFRDSYAGSWHRLEHIWVGFPLPHDI
SSNVPVKWKVMRANVGTGAEWSSAAPNLDCFVACASTLFERFSTTGKMPD
HPLLSSSS
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mRNA from alignment at C-linearis_contig11:3633250..3636411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1411.1 ID=mRNA_C-linearis_contig11.1411.1|Name=mRNA_C-linearis_contig11.1411.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3162bp|location=Sequence derived from alignment at C-linearis_contig11:3633250..3636411- (Chordaria linearis ClinC8C monoicous)
ATGCGGGGAAAGCTGAAGCTTATCCAGGCATACATCACCTCTCTCGAGTG AGTATGCCCCAGTACAACAAGCTCCAGAAGCATACTTCGGTATCTAGTTA GGTGTTTCGTCTCGTGAACCCGCCATCGACAGCCACACACAGATGCTTGT TACACAGGTTGATGACATGATTGGTTTCCTTGTTCGCGGGTCTTCTACAA TCGAGATCTCGTATCCCTTTGTTTTCAGCGCGCACGGCATGATTCATTGG GCTATGGTACTACTGTATCTCAGTCGTCGTGTACAACCTACTATTCGCAA GCGCACTTGTGGCTGAACATGTGGCGATAGAAAAGAAGGGTAAACGTACT GGTACCCAGTAAATCTACCGCTGTAATAGAGTACGTTTTATTGGTGGTTT TCGTACGTGAAGAATTTTCCGTACCACAACTACATATACCTCGGTCATCG AACGCCCTGTGCAAGGTATAATTACACCGGCGAGGAATTCTTCGTCAAGA AAAAGGATCGAGGGTTCAGGCACGTGACCTCGACCGCAAAGCTCATCATC CGCGAGGCGCTACCCATTCAATGCGTGGAGGCGGTCTTTGTTGGGGCCTA CCTAACCGCTGATATGGCCCAGGTAAAAAGAGGCGTGAAACAAAGATACG TGCGACCCAATTCAGGACGGGTGTGTGCTTCGGATCACCATTTTGGCAAG GTCGCAGACAGTCTCCCCGCGACACACTCGCCCATCCAAACGAAGACACA AAATAGTGCTTCTTTGTTGTGGACCATTCCCATGCTCGGAGCAGAACATC TACGTTCTTCGTGCTTCTTCCCTCTAATAGTACAGTAGGTGTAGGCTTCT GATCGTATCACATATGGTACACAGGCACAGATGGGTACCGTACCACCGAC ACTTATCGCGCGTCGAACAGCAGTAGCTATTGTTCGTGGCCTCTTTGTTG CTGTAGCTGCCGGATCCTCTCCTCACGCATTGAGACCCTTCTGAATCCCG AGCTAAGCATGCAGCGTACTGGTTCAGTTGGCAGGGGTGCCCTGCGTGGT CAAGCTTCGTGCCTAAAACACGTCTGTTCGAAAAATAACGCGCAACAACC AACAAGCCCCCACCAAGAAATATCGCTGGAGCGAGACAACCAAACCGTAT CCAGGGGAGATTTCTCTGTGTCGCAGACGAAGAGCTGGTCAGGCGAATGT GAGCCCATGGTTCCCATTCGACTCGTGAAGCCCGAGCTCGAGCTATGTAC CGTAAGTGTTCGAGCGATGGCACACCTGTGCGATCGTTTTTCAAAGCTTG ATTCCTCCTCAACCAGGAGGTCATCACTGCCGAAAAGGGTGGTTTTGGAA AGATCTCGTCGAGAGCTTTCGTATGACGGGGTCGTTTGGTGTTCGCACCC TCCTGGTTGTGCAGAAATCAAGCTTTGAAAAACGATCGCACAGGGGTGCC ATCGCTCGAACACTTACGTTATGTTGAGGGCCCAACGGCCGCATCTAACC AAGTCAAACTGAGTAAATATGATATTCCGTATATCAAGAGACTAGAATTT GAACCTATGACTTCTCGGTCCCAAAGCGAACACGCTACCACTGCATCACC TCCCGAATCACGCAACACCCGATAGAAAAACCTAAGCCTTCAATATTTTT AGTACACCGCCTGGCTCTATTCCTGCGTACGCTACTACGGACAGGGGCGC ACTCCCCTACTATTTTTTGCACCTCACAACTGCTGTACCTGGATATTCAA GGCGAGCGATACACAATCTAAAAAATGGACGAGGCGACTTGTACCACTCC AGCAACACAAATTCCGCCATCGTGTGACAACAGTTAATAGGCTTAATTTT GAGCCCGCTGCACAAATCGAAGAACGAGTACATCATGGCACCGATGCTAT GTACTCGATCTAGTACCTTGGCGTAACCTATACCCATCCTCTATGGATGC CTCTCTCTTTTGCCCCCAAGGTGGACCGATTCCCGGTGTGCTTTCGTTCA TCGTTGGGCGGGCGGGTTTACAGGCACATAATCCTGGCCGTGCGTAGTGG GAAGGTGTGGGGCGCTTTGGGCTTGAGTCGCCGCGACACGCTCATGTACA AAGAACTAAAGTGAGTGTCGTTCACAACTCCCCGCCAATGGTGGGGAGGG AGCATCGCGTTTTCTCTGCTCTATGCTCGTCTGAAGGTTTTGTTAATACA CAATGTCGAAGAGACGGTCTCTTCTAACACACGATCTTGTATATGCACGC AAGAGGCGCGAGCCGTTTTCTGGGCTGACCGCGGGCGATTTGAATGACTT TTTGTATGTTTGTCTAGACTGAACGTAGAACCTCGTCCCATCACTTTTGA TCGCTGTACGGTGGCTACATTCAAAGATACGAGTTCGTGGTGGCGTTTTT TTTAGTGAATGTACTCTTCCAGTACCGCACATCATCCAACGCCAAGGTAC AAGCTGTTTTCTGAGCTGATGGGCGACTTCAGAGACTCGTACGCCGGGAG CTGGCACCGTTTGGAACACATCTGGGTTGGGTTTCCTCTGCCTCACGACA TATCTTCCAATGTGCCCGTCAAGTGGAAGGTGGGAAGCCGTATCCTCCAA CTTATTGAAGTGGTCCCATGTCATGTCATTGTGCGTCACCGTTTGCTTCG ATTGAGGCCTTGCAGCAGGCTGGTTGCTTGTAGCCCATTCCGAACAAAAT ATAAAACACGCCATCTCCCGTCGTGTTTTGATGTTCCTCGATGGATCTTG GCCGGGTTTCATCTAGGGCGGGTGGTCAATACCGGCGTGATCATCGGTGT GATCATCGCATGCAGAGGAACGCTTGCCATCTTTCGTCCTTGGAGAGTTT GCCGGTTTCGATTGCAGCAACCTCCCATCGCCTACAAGTATTCTACAAGA CGTGGGATGAACCACGACCGAGCCACGAACCACTCGACCAAAACACCGCA CAAAGCCACCAGAAACGAGAAAAATAACGAAGATGATCTTATCTCCAACT TCGCCGCACGATCAGGTGATGCGAGCTAACGTCGGAACGGGCGCGGAATG GTCTTCCGCCGCGCCGAACCTGGACTGCTTCGTCGCGTGCGCCTCGACCC TCTTCGAGCGCTTTTCCACCACCGGAAAGATGCCCGACCACCCGCTGCTC AGCAGCAGCAGC
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Coding sequence (CDS) from alignment at C-linearis_contig11:3633250..3636411-

>mRNA_C-linearis_contig11.1411.1 ID=mRNA_C-linearis_contig11.1411.1|Name=mRNA_C-linearis_contig11.1411.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at C-linearis_contig11:3633250..3636411- (Chordaria linearis ClinC8C monoicous)
ATGCGGGGAAAGCTGAAGCTTATCCAGGCATACATCACCTCTCTCGAATG
CGGGGAAAGCTGAAGCTTATCCAGGCATACATCACCTCTCTCGAGTATAA
TTACACCGGCGAGGAATTCTTCGTCAAGAAAAAGGATCGAGGGTTCAGGC
ACGTGACCTCGACCGCAAAGCTCATCATCCGCGAGGCGCTACCCATTCAA
TGCGTGGAGGCGGTCTTTGTTGGGGCCTACCTAACCGCTGATATGGCCCA
GGTATAATTACACCGGCGAGGAATTCTTCGTCAAGAAAAAGGATCGAGGG
TTCAGGCACGTGACCTCGACCGCAAAGCTCATCATCCGCGAGGCGCTACC
CATTCAATGCGTGGAGGCGGTCTTTGTTGGGGCCTACCTAACCGCTGATA
TGGCCCAGGTGGACCGATTCCCGGTGTGCTTTCGTTCATCGTTGGGCGGG
CGGGTTTACAGGCACATAATCCTGGCCGTGCGTAGTGGGAAGGTGTGGGG
CGCTTTGGGCTTGAGTCGCCGCGACACGCTCATGTACAAAGAACTAAAGT
GGACCGATTCCCGGTGTGCTTTCGTTCATCGTTGGGCGGGCGGGTTTACA
GGCACATAATCCTGGCCGTGCGTAGTGGGAAGGTGTGGGGCGCTTTGGGC
TTGAGTCGCCGCGACACGCTCATGTACAAAGAACTAAAGTACAAGCTGTT
TTCTGAGCTGATGGGCGACTTCAGAGACTCGTACGCCGGGAGCTGGCACC
GTTTGGAACACATCTGGGTTGGGTTTCCTCTGCCTCACGACATATCTTCC
AATGTGCCCGTCAAGTGGAAGGTACAAGCTGTTTTCTGAGCTGATGGGCG
ACTTCAGAGACTCGTACGCCGGGAGCTGGCACCGTTTGGAACACATCTGG
GTTGGGTTTCCTCTGCCTCACGACATATCTTCCAATGTGCCCGTCAAGTG
GAAGGTGATGCGAGCTAACGTCGGAACGGGCGCGGAATGGTCTTCCGCCG
CGCCGAACCTGGACTGCTTCGTCGCGTGCGCCTCGACCCTCTTCGAGCGC
TTTTCCACCACCGGAAAGATGCCCGACCACCCGCTGCTCAGCAGCAGCAG
CGTGATGCGAGCTAACGTCGGAACGGGCGCGGAATGGTCTTCCGCCGCGC
CGAACCTGGACTGCTTCGTCGCGTGCGCCTCGACCCTCTTCGAGCGCTTT
TCCACCACCGGAAAGATGCCCGACCACCCGCTGCTCAGCAGCAGCAGC
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