mRNA_C-linearis_contig11.1380.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1380.1
Unique NamemRNA_C-linearis_contig11.1380.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1380.1 vs. uniprot
Match: A0A6H5KZW3_9PHAE (Omp85 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW3_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 3.400e-93
Identity = 167/258 (64.73%), Postives = 185/258 (71.71%), Query Frame = 3 
Query:   60 SRCHGVSLTSSWPFSFVKATAGAGYQQVSPPTNLLKHGSHAAAATVVDEPYSAVGV-----------DTESGGEDGGGALDVFALSGGLSRDWRLPGVLRRLGSWGAGDRRAPAGGEXXXXXXXXXXSVSSFLDVKTGCLLEGGVAPRPFTHELATLVQRMPVGPQGKAGSWNATLNVRQQVQHCSKDTPLHQVTPFGGQRTVRGFAEGELGRAKAYALSTAEVRIPLKNVLGKLPAQAVVFLDLSAFRPVTWSRSTA 800
            S  HGVSL+SSWPF+  K TA AGYQQ+SPPTN+L+  S                            +T  G  D  GA+D+  LSGG+SRDWRLPGVLRRLG  G         G XXXXXXXXX SVSSFLDVKTGCLLEGGVAPRPF+HE ATLV R+P+GP GK GSWNATLNVR QVQHCSKDTPL+QV PFGGQRTVRGFAEG LGRAK YA STAEVR+PL+N+ G LP QAV+FLDL+AFR VTW R  A
Sbjct:  561 SSSHGVSLSSSWPFAIAKVTAAAGYQQISPPTNVLRKHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRGSWDDSGAMDLLTLSGGVSRDWRLPGVLRRLGGKGPS-------GXXXXXXXXXXGSVSSFLDVKTGCLLEGGVAPRPFSHESATLVHRVPLGPHGKGGSWNATLNVRHQVQHCSKDTPLYQVPPFGGQRTVRGFAEGGLGRAKEYATSTAEVRVPLRNLFGTLPTQAVLFLDLAAFRSVTWPRGAA 811
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BLAST of mRNA_C-linearis_contig11.1380.1 vs. uniprot
Match: D8LKK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK3_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 2.850e-61
Identity = 133/280 (47.50%), Postives = 149/280 (53.21%), Query Frame = 3 
Query:   57 MSRCHGVSLTSSWPFSFVKATAGAGYQQVSPPTNLL-KHGSHAAAATVVDEPYSA----------------VGVDTESGGEDGGGALDVFALSGGLSRDWRLPGVLRRLGSWG--AGDRRAPAGGEXXXXXXXXXXSVSSFLDVKTGCLLEGGVAPRPFTHELATLVQRMPVGPQGKAGSWNATLNVRQQVQHCSKDTPLHQVTPFGGQRTVRGFAEGELGRAKAYALSTAEVRIPLKNVLGKLPAQAVVFLDLSAFRPVTWSRSTAAGGNFQRRHGGWE 839
            +S  HGVSL+SSWPF+  K TA AGYQQ+SPPTN+L KH                                V      G  D  GA+D+  LSGG+SRDWRLPGVLRRLG  G   G   A AG            SVSS+LDV+TGCLLEGG APRPF+HE ATLV R+PVGP GK GSWN TLNVR QV                     RGFAEGELGRAK YA STAEVR+PL+N+ G LP Q                         +RRH GWE
Sbjct:  366 LSSSHGVSLSSSWPFAIAKVTAAAGYQQISPPTNVLRKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAESRRRGLWDDSGAMDLLTLSGGVSRDWRLPGVLRRLGGAGPSTGAAAAAAG------------SVSSYLDVRTGCLLEGGAAPRPFSHESATLVHRVPVGPHGKGGSWNVTLNVRHQV---------------------RGFAEGELGRAKEYATSTAEVRVPLRNLFGTLPTQQ------------------------RRRHHGWE 588
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZW3_9PHAE3.400e-9364.73Omp85 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK3_ECTSI2.850e-6147.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3309202..3312061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size839
Cds size825
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927466.9788074-CDS-C-linearis_contig11:3309201..33093001622927466.9788074-CDS-C-linearis_contig11:3309201..3309300Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3309202..3309300 -
1690879717.6874359-CDS-C-linearis_contig11:3309201..33093001690879717.6874359-CDS-C-linearis_contig11:3309201..3309300Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3309202..3309300 -
1622927466.9910815-CDS-C-linearis_contig11:3309744..33098521622927466.9910815-CDS-C-linearis_contig11:3309744..3309852Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3309745..3309852 -
1690879717.7000659-CDS-C-linearis_contig11:3309744..33098521690879717.7000659-CDS-C-linearis_contig11:3309744..3309852Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3309745..3309852 -
1622927467.004234-CDS-C-linearis_contig11:3310106..33101691622927467.004234-CDS-C-linearis_contig11:3310106..3310169Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3310107..3310169 -
1690879717.7101035-CDS-C-linearis_contig11:3310106..33101691690879717.7101035-CDS-C-linearis_contig11:3310106..3310169Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3310107..3310169 -
1622927467.0235155-CDS-C-linearis_contig11:3310639..33107231622927467.0235155-CDS-C-linearis_contig11:3310639..3310723Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3310640..3310723 -
1690879717.7185724-CDS-C-linearis_contig11:3310639..33107231690879717.7185724-CDS-C-linearis_contig11:3310639..3310723Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3310640..3310723 -
1622927467.0420005-CDS-C-linearis_contig11:3311265..33116101622927467.0420005-CDS-C-linearis_contig11:3311265..3311610Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3311266..3311610 -
1690879717.7288568-CDS-C-linearis_contig11:3311265..33116101690879717.7288568-CDS-C-linearis_contig11:3311265..3311610Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3311266..3311610 -
1622927467.0522437-CDS-C-linearis_contig11:3311921..33120471622927467.0522437-CDS-C-linearis_contig11:3311921..3312047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3311922..3312047 -
1690879717.7414658-CDS-C-linearis_contig11:3311921..33120471690879717.7414658-CDS-C-linearis_contig11:3311921..3312047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3311922..3312047 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927467.063519-UTR-C-linearis_contig11:3312047..33120611622927467.063519-UTR-C-linearis_contig11:3312047..3312061Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3312048..3312061 -
1690879717.7522752-UTR-C-linearis_contig11:3312047..33120611690879717.7522752-UTR-C-linearis_contig11:3312047..3312061Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3312048..3312061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1380.1prot_C-linearis_contig11.1380.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3309202..3312047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1380.1

>prot_C-linearis_contig11.1380.1 ID=prot_C-linearis_contig11.1380.1|Name=mRNA_C-linearis_contig11.1380.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=275bp
MLGGGGVTAAADHGMSRCHGVSLTSSWPFSFVKATAGAGYQQVSPPTNLL
KHGSHAAAATVVDEPYSAVGVDTESGGEDGGGALDVFALSGGLSRDWRLP
GVLRRLGSWGAGDRRAPAGGEGGQGGSGGGGSVSSFLDVKTGCLLEGGVA
PRPFTHELATLVQRMPVGPQGKAGSWNATLNVRQQVQHCSKDTPLHQVTP
FGGQRTVRGFAEGELGRAKAYALSTAEVRIPLKNVLGKLPAQAVVFLDLS
AFRPVTWSRSTAAGGNFQRRHGGWE
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mRNA from alignment at C-linearis_contig11:3309202..3312061-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1380.1 ID=mRNA_C-linearis_contig11.1380.1|Name=mRNA_C-linearis_contig11.1380.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2860bp|location=Sequence derived from alignment at C-linearis_contig11:3309202..3312061- (Chordaria linearis ClinC8C monoicous)
GTGGCGACGGCGCGATGCTGGGCGGGGGAGGGGTGACGGCGGCGGCGGAT
CACGGTATGTCCCGATGCCACGGCGTGTCGCTGACGTCCTCTTGGCCCTT
CTCGTTCGTGAAGGCCACCGCCGGGGCGGGGTACCAGCAGGTGGGCTTGG
CATCGTCGCCACCGTACCTTTCCTTTTCGTGCCTGCCGTACCTTTTCTTG
TTTGTTACGCGGAGCATGTTGTGCTTATCCGCCCCTCAAGCGTTTTCTCT
CTCCCTCCCACCCTCTTGGCAACCCTCAGGTGCTGTACGTATCTTCTCCG
TTTGTCCCGCGCACCGCCGGCGGGCTTTGTTTGCAACCCTCGCTCGCCAT
GTAACTGAAGAACGAAGAAAACTACCGCCGTGGAAAACAAAACCTGACTC
AACGCAGATGAAATGCTGTCCTGCTGTCCTCTCCTCTCTTCTCCTGCCCA
GGTTTCTCCGCCGACGAACCTCCTCAAGCACGGCTCCCACGCCGCGGCCG
CCACCGTCGTCGACGAGCCCTACAGCGCCGTCGGCGTGGACACCGAGAGC
GGCGGCGAAGATGGAGGAGGCGCCCTCGACGTCTTCGCCCTGTCCGGCGG
TCTCTCCAGAGACTGGCGGCTCCCGGGCGTGCTGCGGCGGTTGGGCAGCT
GGGGCGCGGGCGATCGACGGGCGCCCGCGGGCGGCGAGGGAGGTCAGGGT
GGGAGTGGGGGTGGGGGCTCCGTGTCGTCGTTCTTGGACGTCAAGACCGG
GTGCCTGCTGGAGGGGGGCGTGGCGCCGCGGCCGTTCACGCATGAGGTGA
GGTTTTCGGGCGGGGCGCCTGTTTTTTGCTGCATTGTACACAGGTCGGCA
GTGGCTGCGGTGTTGGACGTGTTATATTACTTGGGTGTGTTTAATTGTCG
TGTCGGGGGTAGCAGGGGTGGTGGTGGTGGTGGAGGTGCAGTCTGGTCGT
AGGTAAATGTCGAGATACCTTCCCTCCGCGCTTCATGTTTCCTTCCCCGT
AAATCCAGCCGCAACCGGCGTGTGTCCCCCACTTCCGCCTCTCCGCGCTC
CTTTACCTCTTTACTTACCCTTTCCCTTCCTTCAACCTAAGCCTCGTTCC
ATGGCGCGCTTGCTGTTTCTCTGCTCCCCCTTGTTGTTTTCGCTCACCGT
CACCGTCACCGTCTCGTTGTGTTGTGTTGTGTTGTGTTGTGTGCCACATA
CTCTAAGTGGTTGTTGACACCCGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGGGCTGTTGTTGTCGTTGTTGCGTTGTGTTGTATTGTGTTACCTTACG
TCTCGACGGCCCCCCCCTTTCTTTTTGCTTTCTTGAAGCTGGCTACCCTG
GTGCAGCGCATGCCAGTGGGGCCCCAGGGGAAGGCGGGCTCCTGGAACGC
CACCCTTAACGTCCGACAGCAGGTGAGACAAAGACAAGCACAGGCAGCAG
TAGCACTGGGCTTGGCTTGATGCTGCGTGATGCGCCGCAGGTCGGGCGCG
AAGCGGGGCAAGATGCGGCACGACCTACGCATCACTTGTAGTCGACACCG
TGAGCACCTTTGATGAGGGAAGGGCCGAGATCGTGAGGTGGAAGTATTGT
ATTACGAGTGCTTGGTTGGGTGTTGCCCACTCAGCCCTCCCTGGTTTGCC
TGCATCCCTCTGCAGTACCGCGTGCACGCACAAGGCCCGATATTTTTCAC
CCCGGTGCTCTCCCATTTCTGGTCTCATATGGTCCTGCTGTTGCTGATAC
CGCCGCCGTCGCTGCTACTGTTGCTGTTGTTGCTGCTGCTGCTGCTGCTG
CTGCTCCTGCTGCTCCTGCTGCTCCTGCTGCTGCTGCTGCTGTTGCTGCT
GCTGCCGGTTGGTTTCATTTTTTGTGGCATGTTTGGCCGCAGGTCCAGCA
CTGCTCTAAGGACACTCCCCTGCACCAAGTCACGCCGTTCGGAGGGCAGC
GCACGGTGAGATAGAGCTATGTAGATGGATCGAGCAGGGACACAGAAGAT
GCAACGTGCCACTCTCCGAAAACAAGGACCATGACGCCACAAGGTAGCGC
GCGTGTATGTACGCGTTGCGCGCGTTGGAGCGGAGAACGACGAGAATGGT
GTGTTATCATGTCGCGCGTTTCCTCGGCCAGCAGACGCCGAATCGTTCAG
GGGGTTTTATTTGCTGCTTTTTCATGTGTGTATGTGTGTGTATGTGTTTT
TTTTTGCAGGTCAGGGGCTTCGCGGAGGGAGAGCTGGGTCGGGCGAAGGC
GTACGCCCTCAGCACTGCCGAAGTGAGGATACCTCTCAAGAATGTCCTCG
GAAAACTCCCTGCGCAGGTGAGAAAAATTACAGGAAGGGAAGGGCGTGCA
CGTCTGTTCATCAATTTGCAGCCTTTAGTCGGGCGTGCGCGTCTCGTCTC
GTAAACACAAAGCGACGTGCAACTGGCCTTTTCGACCTCTTTGAACTACA
TACAAGTACGTAATTATAGCGTATCGTCTCCTGTACCTGAACCTTGGGCG
ATTGGCCTCGAGCACGTGCTTTTTATTTATCTTTTGCATCCCAACCGTGC
TCCATTCCGCCGCGAGTCCTTCGCCGTCTCTGGATCGTAGTGTTAATATT
GCCTAGGCTTGCACAATGGTTGGGCTGACCACAGCTTCCGCCCGTGGTCT
TGAGCGTCTCCCTTCCTCCCTTCCTCCCTTCGTCTCTCTCGCCCTCTGCA
ATTCGGCCCTGATGCATGCCGCGATCAACGACACACCACCGAAATGAAAA
AAAAAAAAAAGGCCGTGGTGTTCTTGGACCTAAGCGCATTCCGACCAGTG
ACCTGGTCACGCTCGACGGCTGCCGGGGGTAATTTTCAGCGGCGGCACGG
GGGATGGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig11:3309202..3312061-

>mRNA_C-linearis_contig11.1380.1 ID=mRNA_C-linearis_contig11.1380.1|Name=mRNA_C-linearis_contig11.1380.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at C-linearis_contig11:3309202..3312061- (Chordaria linearis ClinC8C monoicous)
ATGCTGGGCGGGGGAGGGGTGACGGCGGCGGCGGATCACGGTATGTCCCG
ATGCCACGGCGTGTCGCTGACGTCCTCTTGGCCCTTCTCGTTCGTGAAGG
CCACCGCCGGGGCGGGGTACCAGCAGATGCTGGGCGGGGGAGGGGTGACG
GCGGCGGCGGATCACGGTATGTCCCGATGCCACGGCGTGTCGCTGACGTC
CTCTTGGCCCTTCTCGTTCGTGAAGGCCACCGCCGGGGCGGGGTACCAGC
AGGTTTCTCCGCCGACGAACCTCCTCAAGCACGGCTCCCACGCCGCGGCC
GCCACCGTCGTCGACGAGCCCTACAGCGCCGTCGGCGTGGACACCGAGAG
CGGCGGCGAAGATGGAGGAGGCGCCCTCGACGTCTTCGCCCTGTCCGGCG
GTCTCTCCAGAGACTGGCGGCTCCCGGGCGTGCTGCGGCGGTTGGGCAGC
TGGGGCGCGGGCGATCGACGGGCGCCCGCGGGCGGCGAGGGAGGTCAGGG
TGGGAGTGGGGGTGGGGGCTCCGTGTCGTCGTTCTTGGACGTCAAGACCG
GGTGCCTGCTGGAGGGGGGCGTGGCGCCGCGGCCGTTCACGCATGAGGTT
TCTCCGCCGACGAACCTCCTCAAGCACGGCTCCCACGCCGCGGCCGCCAC
CGTCGTCGACGAGCCCTACAGCGCCGTCGGCGTGGACACCGAGAGCGGCG
GCGAAGATGGAGGAGGCGCCCTCGACGTCTTCGCCCTGTCCGGCGGTCTC
TCCAGAGACTGGCGGCTCCCGGGCGTGCTGCGGCGGTTGGGCAGCTGGGG
CGCGGGCGATCGACGGGCGCCCGCGGGCGGCGAGGGAGGTCAGGGTGGGA
GTGGGGGTGGGGGCTCCGTGTCGTCGTTCTTGGACGTCAAGACCGGGTGC
CTGCTGGAGGGGGGCGTGGCGCCGCGGCCGTTCACGCATGAGCTGGCTAC
CCTGGTGCAGCGCATGCCAGTGGGGCCCCAGGGGAAGGCGGGCTCCTGGA
ACGCCACCCTTAACGTCCGACAGCAGCTGGCTACCCTGGTGCAGCGCATG
CCAGTGGGGCCCCAGGGGAAGGCGGGCTCCTGGAACGCCACCCTTAACGT
CCGACAGCAGGTCCAGCACTGCTCTAAGGACACTCCCCTGCACCAAGTCA
CGCCGTTCGGAGGGCAGCGCACGGTCCAGCACTGCTCTAAGGACACTCCC
CTGCACCAAGTCACGCCGTTCGGAGGGCAGCGCACGGTCAGGGGCTTCGC
GGAGGGAGAGCTGGGTCGGGCGAAGGCGTACGCCCTCAGCACTGCCGAAG
TGAGGATACCTCTCAAGAATGTCCTCGGAAAACTCCCTGCGCAGGTCAGG
GGCTTCGCGGAGGGAGAGCTGGGTCGGGCGAAGGCGTACGCCCTCAGCAC
TGCCGAAGTGAGGATACCTCTCAAGAATGTCCTCGGAAAACTCCCTGCGC
AGGCCGTGGTGTTCTTGGACCTAAGCGCATTCCGACCAGTGACCTGGTCA
CGCTCGACGGCTGCCGGGGGTAATTTTCAGCGGCGGCACGGGGGATGGGA
GGCCGTGGTGTTCTTGGACCTAAGCGCATTCCGACCAGTGACCTGGTCAC
GCTCGACGGCTGCCGGGGGTAATTTTCAGCGGCGGCACGGGGGATGGGAG
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