mRNA_C-linearis_contig11.1379.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1379.1
Unique NamemRNA_C-linearis_contig11.1379.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1379.1 vs. uniprot
Match: A0A6H5KZW3_9PHAE (Omp85 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW3_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.120e-9
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 2 
Query:  260 GGFRVGRGQGVGLRIADLIQVDLGISRSGMKQLHIGLVDRNF 385
            GGFR  RGQGVGLRIA+LIQVD  ISR GMKQLHIGLVD +F
Sbjct:  920 GGFRAERGQGVGLRIAELIQVDFCISRGGMKQLHIGLVDGHF 961
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZW3_9PHAE8.120e-980.95Omp85 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3304145..3305828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size731
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1379.1prot_C-linearis_contig11.1379.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3304488..3305812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927427.1336699-UTR-C-linearis_contig11:3304144..33044871622927427.1336699-UTR-C-linearis_contig11:3304144..3304487Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3304145..3304487 -
1690879694.024753-UTR-C-linearis_contig11:3304144..33044871690879694.024753-UTR-C-linearis_contig11:3304144..3304487Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3304145..3304487 -
1622927427.1990209-UTR-C-linearis_contig11:3305812..33058281622927427.1990209-UTR-C-linearis_contig11:3305812..3305828Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3305813..3305828 -
1690879694.0670352-UTR-C-linearis_contig11:3305812..33058281690879694.0670352-UTR-C-linearis_contig11:3305812..3305828Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3305813..3305828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927427.1503823-CDS-C-linearis_contig11:3304487..33045201622927427.1503823-CDS-C-linearis_contig11:3304487..3304520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3304488..3304520 -
1690879694.037686-CDS-C-linearis_contig11:3304487..33045201690879694.037686-CDS-C-linearis_contig11:3304487..3304520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3304488..3304520 -
1622927427.1675212-CDS-C-linearis_contig11:3305235..33054291622927427.1675212-CDS-C-linearis_contig11:3305235..3305429Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3305236..3305429 -
1690879694.0475042-CDS-C-linearis_contig11:3305235..33054291690879694.0475042-CDS-C-linearis_contig11:3305235..3305429Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3305236..3305429 -
1622927427.1851168-CDS-C-linearis_contig11:3305667..33058121622927427.1851168-CDS-C-linearis_contig11:3305667..3305812Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3305668..3305812 -
1690879694.0589805-CDS-C-linearis_contig11:3305667..33058121690879694.0589805-CDS-C-linearis_contig11:3305667..3305812Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3305668..3305812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1379.1

>prot_C-linearis_contig11.1379.1 ID=prot_C-linearis_contig11.1379.1|Name=mRNA_C-linearis_contig11.1379.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=124bp
MQHQHQQQDEPANEPAEPPLEGDSPAAAVAGGDLVPSPATALVAPPIAAS
QEVTIPSAGEWRTSPPASSPSSPPPAAAAAAGGFRVGRGQGVGLRIADLI
QVDLGISRSGMKQLHIGLVDRNF*
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mRNA from alignment at C-linearis_contig11:3304145..3305828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1379.1 ID=mRNA_C-linearis_contig11.1379.1|Name=mRNA_C-linearis_contig11.1379.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1684bp|location=Sequence derived from alignment at C-linearis_contig11:3304145..3305828- (Chordaria linearis ClinC8C monoicous)
AGACCGACATAAAGAGATGCAGCACCAGCACCAGCAGCAGGACGAGCCGG
CCAACGAGCCCGCGGAGCCACCACTGGAGGGTGATAGCCCGGCCGCCGCC
GTTGCGGGAGGAGATTTGGTTCCATCTCCGGCCACCGCTCTAGTAGCGCC
GCCCATTGCGGGTGAGTTGCGACGTCATCGGATCGGTGGGCCGGCCGGCG
GCGGGACGCTTCGCTTGTTTTCATTGGGGATTTGGGAGTATCATTGAGTT
GAACGCAAACGCGCGGGCTGTTTGCTCACCTATATTCTCCCTGCAGTGAG
TTGAAGCGGCCAGCGTGCGCAAACGCGTAGCAGAACTCACTCCTCCCACC
CCAACCCCACCCCACCCCACCGCACCTCGCCCGTTTTGTGACTCTGCAGC
ATCACAGGAGGTGACCATACCATCGGCGGGCGAGTGGCGCACTTCACCGC
CCGCCTCCTCCCCCTCCTCGCCTCCACCTGCGGCGGCGGCAGCTGCAGGA
GGCTTTCGCGTTGGCAGGGGGCAGGGAGTCGGGCTTCGCATCGCGGACCT
GATACAGGTCGACTTGGGCATCTCCCGCAGCGGCATGAAGCAGGTGCGCC
GCCGCCCCCCACCCCGAGTTTTGATCGGGGGCCGCGGAGTCCCTTCCCGG
CGCCGTTGGTCCGTTGTTTTGCTGTGATTTCTGGGTCTCGCTCTTGCGGT
GCTGGCTTTTGAAGGATTTTTTTTACGATATGAAAACGCCAGCGGTGAAT
GTCCGACCTATGAAAAATGTCGTTTCAAGGGGACTGTTGTACTACTCTGT
CGTAGGCACACTGACCCGGTGTATCTCCCCTGCTGCTTCAGAAAGAAAGT
TGTCGAGGGGGTCCAGCTGTTGTGATGTGAGTCGCGCATGTGTGTGTAGC
GCGTGACTTCTTTCTTGTCCCTCTCGGACACACACGATATTTTTTCACTT
CCGGCTTCAAGGGGCCGTCCGAAGGCTTGCATGTCTGATAAGAGGCTATC
AGATGTGCGGAGAATCGTCGCCGTTGCGCCGCGCAAGTCGTCCGTCACCA
ACAGCAATGTTGCATTCGTACTCTTCTTCCGCAAGCTATTCCCCACCCGT
AATCTAACCATGGAACCGAAAACGATCATCCTCATTTCGCCGTTGTTCCG
TCCCTCCCTCCCTCTCGCTCCGCTTGCCTGCCGGATTCACGCTGCCGGAA
CAACGCCTGCTTACTCCCGGGATATTATGCCGTGAAACCAACATGATCCA
CATCACATCCGAACCTTGTCGTCACGGCGGCGGCGGGGCAACTTTTGTGG
CCGACCAGCTCCACATCGGACTCGTCGATCGAAACTTCTGAGGGAAAAGG
TTGGAAGGTTGTTCAGGGTGTGACTATTTATTTCTCTGAGAAAAGTTCGT
GCGTGATTCTTTTTCGTTTCTTCCACCGAAAAAACGGGCTTTTGAAGCGA
ATGAGGGTCAGCTGTGCAGGTAATATATTAGCTCTGGCGCGAAGGATGTA
GACGGGCGCAGGGACCGCGGGATGCAATTGCCAAGATCTGGCCTGTTCCT
AGAGTTGGTCCCTTGCCGTAGTCTTTCTCTGGGACTTGTGAGGGTGATTT
TGTTGAAATAGTTTAATGGTCGTCTCTGAAGCCAAGCGTCCCCGAAGCGG
GCGAACGCCGAAGCTCCAACAACATCGTGCGGGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3304145..3305828-

>mRNA_C-linearis_contig11.1379.1 ID=mRNA_C-linearis_contig11.1379.1|Name=mRNA_C-linearis_contig11.1379.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at C-linearis_contig11:3304145..3305828- (Chordaria linearis ClinC8C monoicous)
ATGCAGCACCAGCACCAGCAGCAGGACGAGCCGGCCAACGAGCCCGCGGA
GCCACCACTGGAGGGTGATAGCCCGGCCGCCGCCGTTGCGGGAGGAGATT
TGGTTCCATCTCCGGCCACCGCTCTAGTAGCGCCGCCCATTGCGGATGCA
GCACCAGCACCAGCAGCAGGACGAGCCGGCCAACGAGCCCGCGGAGCCAC
CACTGGAGGGTGATAGCCCGGCCGCCGCCGTTGCGGGAGGAGATTTGGTT
CCATCTCCGGCCACCGCTCTAGTAGCGCCGCCCATTGCGGCATCACAGGA
GGTGACCATACCATCGGCGGGCGAGTGGCGCACTTCACCGCCCGCCTCCT
CCCCCTCCTCGCCTCCACCTGCGGCGGCGGCAGCTGCAGGAGGCTTTCGC
GTTGGCAGGGGGCAGGGAGTCGGGCTTCGCATCGCGGACCTGATACAGGT
CGACTTGGGCATCTCCCGCAGCGGCATGAAGCAGCATCACAGGAGGTGAC
CATACCATCGGCGGGCGAGTGGCGCACTTCACCGCCCGCCTCCTCCCCCT
CCTCGCCTCCACCTGCGGCGGCGGCAGCTGCAGGAGGCTTTCGCGTTGGC
AGGGGGCAGGGAGTCGGGCTTCGCATCGCGGACCTGATACAGGTCGACTT
GGGCATCTCCCGCAGCGGCATGAAGCAGCTCCACATCGGACTCGTCGATC
GAAACTTCTGACTCCACATCGGACTCGTCGATCGAAACTTCTGA
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