mRNA_C-linearis_contig11.1374.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI) HSP 1 Score: 341 bits (874), Expect = 3.610e-111 Identity = 176/277 (63.54%), Postives = 209/277 (75.45%), Query Frame = 3
Query: 306 PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENYLQDRRDGALNSGPGYG-GVGKPFNSGNGAVARGFSAEGAKDEWYGLHLDIPTRDLAAKLRLLVQPDGSLQDPPL 1133
P L + ++ K R +T RLF+KQR QQYT SGRRHRDGKNG RMC+TVH+P AP FK+LEVGVADA AKG + NP++ +DG PD+ C GSY IMDEVGTGT SHAHHQAI+D++ +P+HGAPT FV+D DPIS TF++ V IA GTAD V AGVGV A VPPPT QIG+SCGSTQ SDWN L KE+ LENY+QDRRDG P G GVGKP NSG+G AR FS EG+ + +YGLHL +PT+DL A+L LLVQPDGSL++PPL
Sbjct: 166 PFLVPLDNLCKRRDSTVRLFVKQRAQQYTTSGRRHRDGKNGRWRMCITVHNPGAPLGFKRLEVGVADARVAKGDQATNPWQLKADGTPDMECIDCTTGSYQIMDEVGTGTASHAHHQAIIDKNPLPQHGAPTMFVVDFDPISPHTFVDDVERIAEGTADKVKAGVGVPAYVPPPTQAQIGRSCGSTQTSDWNRLNKEKKLENYIQDRRDGGRVQSPHRGFGVGKPSNSGDGHAARDFSEEGSGERYYGLHLALPTKDLRAQLPLLVQPDGSLKEPPL 442
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5L1U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U0_9PHAE) HSP 1 Score: 250 bits (639), Expect = 1.980e-77 Identity = 129/209 (61.72%), Postives = 154/209 (73.68%), Query Frame = 3
Query: 306 PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENYLQDRRD 932
P L + + KPRP+TDRLF KQRVQQ KSGRRH D KN P R+C+TV + +AP KQLE+G+ DASKAKGG +VNP++ +DGEPD R C GSYH+MD V TG SHAHHQA+V++ LI +HGA TTFV+DLDP++ TFI+ VAEIARGTAD V GVG SA VPPPT Q+G S S + DWN+ QK NLENYLQ RRD
Sbjct: 109 PFLGPLAKLCKPRPSTDRLFTKQRVQQSIKSGRRHHDAKNAPWRVCVTVANLSAPKGLKQLEIGMTDASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYHVMDTVATGLDSHAHHQALVNKELILKHGALTTFVLDLDPVNLDTFIDDVAEIARGTADAVIDGVGESAYVPPPTAAQMGTSSYSQKWRDWNQQQKYTNLENYLQQRRD 317
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5KRD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD3_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.200e-54 Identity = 99/167 (59.28%), Postives = 118/167 (70.66%), Query Frame = 3
Query: 438 MCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGV-SARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENYLQDRRDG 935
MC+T+HDPAAP +FKQLE+G D SKAKGG+++NPFR DG D CP+ SYHIMD VGTG HAHHQA +D+ L+ HGA TTFV D++PI+ TFI+ V IARGTA +G G SA VPPPT QIG S G Q SDW++LQKE NLE Y +DRR G
Sbjct: 109 MCITIHDPAAPSNFKQLEIGEVDGSKAKGGHAINPFRAKPDGTTDATTFDCPSPSYHIMDRVGTGLHFHAHHQAKIDKRLLDVHGAATTFVDDMNPINPDTFIQDVDVIARGTAGALGPNAGCESAPVPPPTDEQIGVSSGPEQTSDWHKLQKETNLEAYTEDRRAG 275
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5K3Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q8_9PHAE) HSP 1 Score: 187 bits (474), Expect = 5.520e-52 Identity = 98/167 (58.68%), Postives = 113/167 (67.66%), Query Frame = 3
Query: 306 PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGV 806
P L + + KPR +TDRLFLKQR QQY SGRRHRDGKNG RMC+TVH+P APP FK+LE+ +DG PD+ CPAGSYH MDEVGTGT SHAHHQ I+D++L+ EHGAPTTFV+D DPI TFI+ VA IA GT D V A VGV
Sbjct: 152 PFLGPLEKLCKPRDSTDRLFLKQRAQQYITSGRRHRDGKNGLWRMCVTVHNPGAPPGFKRLELK-------------------ADGTPDMECIDCPAGSYHTMDEVGTGTASHAHHQEIIDKNLLREHGAPTTFVLDFDPIDPNTFIDDVARIAEGTVDKVKAAVGV 299
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5K5U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U5_9PHAE) HSP 1 Score: 187 bits (476), Expect = 1.400e-51 Identity = 109/216 (50.46%), Postives = 136/216 (62.96%), Query Frame = 3
Query: 231 VAKATQRPLHAAQQHRP---HRPLLFAG------PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQS 851
K ++P+ Q P H+ ++ A P +++ + KPRP T+RL HRDGKNGP RMC+T HDPAAPP K+ EVGVADAS AKGG ++ P + D +PD C AGSYHIMD+VGTGT SHAHHQAI+D+S++ H A TTFVIDLDPIS TF++ V IA+GT+ V AGVGV A VP PT QIG+S
Sbjct: 33 TVKVNRKPVRQTQPSSPSTLHKSIVIADYFSSLTPFSKQLEGLCKPRPKTNRL---------------HRDGKNGPWRMCITAHDPAAPPHTKRSEVGVADASNAKGGGALYPRQLKDDRKPDSVRFDCAAGSYHIMDKVGTGTNSHAHHQAIIDKSVLSTHEALTTFVIDLDPISPHTFVDDVENIAKGTSIEVKAGVGVPAYVPTPTQAQIGRS 233
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5J6K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K4_9PHAE) HSP 1 Score: 175 bits (444), Expect = 1.250e-49 Identity = 84/120 (70.00%), Postives = 98/120 (81.67%), Query Frame = 3
Query: 297 FAGPVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQ 656
F GPV +++ KPRPTTDRLFLKQR QQYT SGRRHRDGKNGP RMC+T+HDPAAPP KQLE+G+AD SKAKG +VNPF+T +DG PD R CP+GSYH+MDEV TGT+SHA H+
Sbjct: 68 FLGPVEKKL---CKPRPTTDRLFLKQRAQQYTTSGRRHRDGKNGPWRMCVTIHDPAAPPHAKQLEIGLADGSKAKGDGAVNPFQTKADGTPDSRRFDCPSGSYHLMDEVATGTVSHASHK 184
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5KI01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI01_9PHAE) HSP 1 Score: 166 bits (420), Expect = 8.260e-45 Identity = 97/203 (47.78%), Postives = 123/203 (60.59%), Query Frame = 3
Query: 306 PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENY 914
P L + + K R +TDRLFLKQR QQY SGRRHRDG+NG RMC+TVH+P APP FK+LEVGVADA AKGG+++NP++ +D +L+ EHGAP TFV+D DPI TFI+ VA IA GTAD V AGVGVSA V P T QIG+SC S +M +N+ ++ ++ + Y
Sbjct: 152 PFLGPLEKLCKLRDSTDRLFLKQRAQQYITSGRRHRDGRNGLWRMCVTVHNPGAPPGFKRLEVGVADARVAKGGDAINPWQLKAD-------------------------------------NLLREHGAPATFVLDFDPIDPNTFIDDVARIAEGTADKVKAGVGVSAYVCPRTEEQIGKSCASEKMRAYNKQREVDDPDGY 317
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5KU06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU06_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.810e-32 Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 31 PTASKGKKKGKKIRHDYRDVDPKYADMTTERLFNERHIATGSFSYNHPLFAREAAAFNDVKVNGKPVWQKQPSGPSTLHNSIVLTDHFSSLAPFLRGLEAL 333
P ASK K+K KIRHDYR V P+Y +MTTERLF E H+ATGSF +H FA+E FNDV + GKPVWQK+PSG STLHNSI + +HF SLAP L LEAL
Sbjct: 20 PCASKEKRK--KIRHDYRSVLPEYEEMTTERLFAECHVATGSFFIDHNRFAQEGERFNDVTIGGKPVWQKKPSGHSTLHNSIAIAEHFPSLAPLLIPLEAL 118
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI) HSP 1 Score: 123 bits (308), Expect = 2.640e-27 Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 3
Query: 909 NYLQDRRDGALNSGPGYGGVGKPFNSGNGAVARGFSAEGAKDEWYGLHLDIPTRDLAAKLRLLVQPDGSLQDPPL 1133
N+++ ALNSGPGYG VGKPFNSGNGA AR FSAEGA D+WYGLHLDIPTRDLAAKLRLLVQPDGSL+D PL
Sbjct: 373 NWVKAASQKALNSGPGYGAVGKPFNSGNGATARDFSAEGANDKWYGLHLDIPTRDLAAKLRLLVQPDGSLKDAPL 447
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.470e-23 Identity = 68/169 (40.24%), Postives = 80/169 (47.34%), Query Frame = 3
Query: 423 NGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENYLQDRR 929
N RM +T+HDPAAP +F QLE+GV D SKAKGG+++NPFR DG D CP+ SYHIMD VGTG SHAHHQA +D SL+ +G S G Q SD N+L K NLE Y DRR
Sbjct: 82 NAEWRMFITIHDPAAPSNFIQLEIGVVDGSKAKGGHAINPFRAKPDGSTDATTFDCPSPSYHIMDRVGTGHHSHAHHQAKIDTSLLA----------------------------------------------------MGVSSGPEQTSDKNKLYKGTNLEAYTDDRR 198 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1374.1 >prot_C-linearis_contig11.1374.1 ID=prot_C-linearis_contig11.1374.1|Name=mRNA_C-linearis_contig11.1374.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp MCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHback to top mRNA from alignment at C-linearis_contig11:3230703..3232967- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1374.1 ID=mRNA_C-linearis_contig11.1374.1|Name=mRNA_C-linearis_contig11.1374.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2265bp|location=Sequence derived from alignment at C-linearis_contig11:3230703..3232967- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:3230703..3232967- >mRNA_C-linearis_contig11.1374.1 ID=mRNA_C-linearis_contig11.1374.1|Name=mRNA_C-linearis_contig11.1374.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig11:3230703..3232967- (Chordaria linearis ClinC8C monoicous)back to top |