mRNA_C-linearis_contig11.1374.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1374.1
Unique NamemRNA_C-linearis_contig11.1374.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 3.610e-111
Identity = 176/277 (63.54%), Postives = 209/277 (75.45%), Query Frame = 3
Query:  306 PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENYLQDRRDGALNSGPGYG-GVGKPFNSGNGAVARGFSAEGAKDEWYGLHLDIPTRDLAAKLRLLVQPDGSLQDPPL 1133
            P L  + ++ K R +T RLF+KQR QQYT SGRRHRDGKNG  RMC+TVH+P AP  FK+LEVGVADA  AKG  + NP++  +DG PD+    C  GSY IMDEVGTGT SHAHHQAI+D++ +P+HGAPT FV+D DPIS  TF++ V  IA GTAD V AGVGV A VPPPT  QIG+SCGSTQ SDWN L KE+ LENY+QDRRDG     P  G GVGKP NSG+G  AR FS EG+ + +YGLHL +PT+DL A+L LLVQPDGSL++PPL
Sbjct:  166 PFLVPLDNLCKRRDSTVRLFVKQRAQQYTTSGRRHRDGKNGRWRMCITVHNPGAPLGFKRLEVGVADARVAKGDQATNPWQLKADGTPDMECIDCTTGSYQIMDEVGTGTASHAHHQAIIDKNPLPQHGAPTMFVVDFDPISPHTFVDDVERIAEGTADKVKAGVGVPAYVPPPTQAQIGRSCGSTQTSDWNRLNKEKKLENYIQDRRDGGRVQSPHRGFGVGKPSNSGDGHAARDFSEEGSGERYYGLHLALPTKDLRAQLPLLVQPDGSLKEPPL 442          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5L1U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U0_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.980e-77
Identity = 129/209 (61.72%), Postives = 154/209 (73.68%), Query Frame = 3
Query:  306 PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENYLQDRRD 932
            P L  +  + KPRP+TDRLF KQRVQQ  KSGRRH D KN P R+C+TV + +AP   KQLE+G+ DASKAKGG +VNP++  +DGEPD R   C  GSYH+MD V TG  SHAHHQA+V++ LI +HGA TTFV+DLDP++  TFI+ VAEIARGTAD V  GVG SA VPPPT  Q+G S  S +  DWN+ QK  NLENYLQ RRD
Sbjct:  109 PFLGPLAKLCKPRPSTDRLFTKQRVQQSIKSGRRHHDAKNAPWRVCVTVANLSAPKGLKQLEIGMTDASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYHVMDTVATGLDSHAHHQALVNKELILKHGALTTFVLDLDPVNLDTFIDDVAEIARGTADAVIDGVGESAYVPPPTAAQMGTSSYSQKWRDWNQQQKYTNLENYLQQRRD 317          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5KRD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD3_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.200e-54
Identity = 99/167 (59.28%), Postives = 118/167 (70.66%), Query Frame = 3
Query:  438 MCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGV-SARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENYLQDRRDG 935
            MC+T+HDPAAP +FKQLE+G  D SKAKGG+++NPFR   DG  D     CP+ SYHIMD VGTG   HAHHQA +D+ L+  HGA TTFV D++PI+  TFI+ V  IARGTA  +G   G  SA VPPPT  QIG S G  Q SDW++LQKE NLE Y +DRR G
Sbjct:  109 MCITIHDPAAPSNFKQLEIGEVDGSKAKGGHAINPFRAKPDGTTDATTFDCPSPSYHIMDRVGTGLHFHAHHQAKIDKRLLDVHGAATTFVDDMNPINPDTFIQDVDVIARGTAGALGPNAGCESAPVPPPTDEQIGVSSGPEQTSDWHKLQKETNLEAYTEDRRAG 275          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5K3Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q8_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 5.520e-52
Identity = 98/167 (58.68%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  306 PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGV 806
            P L  +  + KPR +TDRLFLKQR QQY  SGRRHRDGKNG  RMC+TVH+P APP FK+LE+                    +DG PD+    CPAGSYH MDEVGTGT SHAHHQ I+D++L+ EHGAPTTFV+D DPI   TFI+ VA IA GT D V A VGV
Sbjct:  152 PFLGPLEKLCKPRDSTDRLFLKQRAQQYITSGRRHRDGKNGLWRMCVTVHNPGAPPGFKRLELK-------------------ADGTPDMECIDCPAGSYHTMDEVGTGTASHAHHQEIIDKNLLREHGAPTTFVLDFDPIDPNTFIDDVARIAEGTVDKVKAAVGV 299          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5K5U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U5_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.400e-51
Identity = 109/216 (50.46%), Postives = 136/216 (62.96%), Query Frame = 3
Query:  231 VAKATQRPLHAAQQHRP---HRPLLFAG------PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQS 851
              K  ++P+   Q   P   H+ ++ A       P  +++  + KPRP T+RL               HRDGKNGP RMC+T HDPAAPP  K+ EVGVADAS AKGG ++ P +   D +PD     C AGSYHIMD+VGTGT SHAHHQAI+D+S++  H A TTFVIDLDPIS  TF++ V  IA+GT+  V AGVGV A VP PT  QIG+S
Sbjct:   33 TVKVNRKPVRQTQPSSPSTLHKSIVIADYFSSLTPFSKQLEGLCKPRPKTNRL---------------HRDGKNGPWRMCITAHDPAAPPHTKRSEVGVADASNAKGGGALYPRQLKDDRKPDSVRFDCAAGSYHIMDKVGTGTNSHAHHQAIIDKSVLSTHEALTTFVIDLDPISPHTFVDDVENIAKGTSIEVKAGVGVPAYVPTPTQAQIGRS 233          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5J6K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K4_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.250e-49
Identity = 84/120 (70.00%), Postives = 98/120 (81.67%), Query Frame = 3
Query:  297 FAGPVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQ 656
            F GPV +++    KPRPTTDRLFLKQR QQYT SGRRHRDGKNGP RMC+T+HDPAAPP  KQLE+G+AD SKAKG  +VNPF+T +DG PD R   CP+GSYH+MDEV TGT+SHA H+
Sbjct:   68 FLGPVEKKL---CKPRPTTDRLFLKQRAQQYTTSGRRHRDGKNGPWRMCVTIHDPAAPPHAKQLEIGLADGSKAKGDGAVNPFQTKADGTPDSRRFDCPSGSYHLMDEVATGTVSHASHK 184          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5KI01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI01_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 8.260e-45
Identity = 97/203 (47.78%), Postives = 123/203 (60.59%), Query Frame = 3
Query:  306 PVLERVGSVVKPRPTTDRLFLKQRVQQYTKSGRRHRDGKNGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENY 914
            P L  +  + K R +TDRLFLKQR QQY  SGRRHRDG+NG  RMC+TVH+P APP FK+LEVGVADA  AKGG+++NP++  +D                                     +L+ EHGAP TFV+D DPI   TFI+ VA IA GTAD V AGVGVSA V P T  QIG+SC S +M  +N+ ++ ++ + Y
Sbjct:  152 PFLGPLEKLCKLRDSTDRLFLKQRAQQYITSGRRHRDGRNGLWRMCVTVHNPGAPPGFKRLEVGVADARVAKGGDAINPWQLKAD-------------------------------------NLLREHGAPATFVLDFDPIDPNTFIDDVARIAEGTADKVKAGVGVSAYVCPRTEEQIGKSCASEKMRAYNKQREVDDPDGY 317          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5KU06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU06_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.810e-32
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   31 PTASKGKKKGKKIRHDYRDVDPKYADMTTERLFNERHIATGSFSYNHPLFAREAAAFNDVKVNGKPVWQKQPSGPSTLHNSIVLTDHFSSLAPFLRGLEAL 333
            P ASK K+K  KIRHDYR V P+Y +MTTERLF E H+ATGSF  +H  FA+E   FNDV + GKPVWQK+PSG STLHNSI + +HF SLAP L  LEAL
Sbjct:   20 PCASKEKRK--KIRHDYRSVLPEYEEMTTERLFAECHVATGSFFIDHNRFAQEGERFNDVTIGGKPVWQKKPSGHSTLHNSIAIAEHFPSLAPLLIPLEAL 118          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.640e-27
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 3
Query:  909 NYLQDRRDGALNSGPGYGGVGKPFNSGNGAVARGFSAEGAKDEWYGLHLDIPTRDLAAKLRLLVQPDGSLQDPPL 1133
            N+++     ALNSGPGYG VGKPFNSGNGA AR FSAEGA D+WYGLHLDIPTRDLAAKLRLLVQPDGSL+D PL
Sbjct:  373 NWVKAASQKALNSGPGYGAVGKPFNSGNGATARDFSAEGANDKWYGLHLDIPTRDLAAKLRLLVQPDGSLKDAPL 447          
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.470e-23
Identity = 68/169 (40.24%), Postives = 80/169 (47.34%), Query Frame = 3
Query:  423 NGPARMCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSHCPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFGTFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNELQKEENLENYLQDRR 929
            N   RM +T+HDPAAP +F QLE+GV D SKAKGG+++NPFR   DG  D     CP+ SYHIMD VGTG  SHAHHQA +D SL+                                                     +G S G  Q SD N+L K  NLE Y  DRR
Sbjct:   82 NAEWRMFITIHDPAAPSNFIQLEIGVVDGSKAKGGHAINPFRAKPDGSTDATTFDCPSPSYHIMDRVGTGHHSHAHHQAKIDTSLLA----------------------------------------------------MGVSSGPEQTSDKNKLYKGTNLEAYTDDRR 198          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LFC5_ECTSI3.610e-11163.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1U0_9PHAE1.980e-7761.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRD3_9PHAE1.200e-5459.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3Q8_9PHAE5.520e-5258.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5U5_9PHAE1.400e-5150.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6K4_9PHAE1.250e-4970.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI01_9PHAE8.260e-4547.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU06_9PHAE1.810e-3265.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8P5_ECTSI2.640e-2780.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M5_9PHAE2.470e-2340.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3230703..3232967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1136
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1374.1prot_C-linearis_contig11.1374.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3230703..3232530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.5763414-CDS-C-linearis_contig11:3230702..32309021622927465.5763414-CDS-C-linearis_contig11:3230702..3230902Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3230703..3230902 -
1690879716.9124715-CDS-C-linearis_contig11:3230702..32309021690879716.9124715-CDS-C-linearis_contig11:3230702..3230902Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3230703..3230902 -
1622927465.591315-CDS-C-linearis_contig11:3232031..32325301622927465.591315-CDS-C-linearis_contig11:3232031..3232530Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3232032..3232530 -
1690879716.928917-CDS-C-linearis_contig11:3232031..32325301690879716.928917-CDS-C-linearis_contig11:3232031..3232530Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3232032..3232530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.6040173-UTR-C-linearis_contig11:3232530..32329671622927465.6040173-UTR-C-linearis_contig11:3232530..3232967Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3232531..3232967 -
1690879716.9370787-UTR-C-linearis_contig11:3232530..32329671690879716.9370787-UTR-C-linearis_contig11:3232530..3232967Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3232531..3232967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1374.1

>prot_C-linearis_contig11.1374.1 ID=prot_C-linearis_contig11.1374.1|Name=mRNA_C-linearis_contig11.1374.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MCMTVHDPAAPPSFKQLEVGVADASKAKGGNSVNPFRTDSDGEPDVRGSH
CPAGSYHIMDEVGTGTISHAHHQAIVDESLIPEHGAPTTFVIDLDPISFG
TFIEGVAEIARGTADVVGAGVGVSARVPPPTPGQIGQSCGSTQMSDWNEL
QKEENLENYLQDRRDGALNSGPGYGGVGKPFNSGNGAVARGFSAEGAKDE
WYGLHLDIPTRDLAAKLRLLVQPDGSLQDPPL*
back to top

mRNA from alignment at C-linearis_contig11:3230703..3232967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1374.1 ID=mRNA_C-linearis_contig11.1374.1|Name=mRNA_C-linearis_contig11.1374.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2265bp|location=Sequence derived from alignment at C-linearis_contig11:3230703..3232967- (Chordaria linearis ClinC8C monoicous)
ACCACGTCGAAGCGGAAGGGGAGGAAGACGCCCACCGCGTCGAAGGGGAA GAAGAAGGGGAAGAAGATTCGACACGACTACCGGGACGTGGACCCCAAGT ACGCGGACATGACGACTGAGCGCCTCTTCAACGAGCGCCACATCGCCACC GGCAGCTTCTCGTACAACCACCCTCTCTTCGCGAGGGAGGCGGCCGCGTT CAACGATGTCAAAGTCAACGGGAAACCGGTGTGGCAAAAGCAACCCAGCG GCCCCTCCACGCTGCACAACAGCATCGTCCTCACCGACCACTTCTCTTCG CTGGCCCCGTTCTTGAGAGGGTTGGAAGCGTTGTGAAGCCGAGACCCACC ACCGACCGCCTGTTCCTGAAGCAGAGAGTGCAGCAGTACACGAAGTCCGG TCGGAGACACCGTGACGGCAAGAACGGGCCCGCGCGGATGTGCATGACCG TCCACGACCCGGCCGCGCCGCCATCCTTCAAGCAGCTGGAGGTCGGGGTG GCGGACGCCAGCAAGGCGAAGGGTGGCAACAGCGTCAACCCATTCCGGAC CGACTCTGACGGCGAACCAGACGTCCGGGGGTCCCACTGCCCGGCGGGCT CGTACCACATCATGGACGAGGTGGGCACCGGGACCATCTCCCATGCGCAT CACCAGGCTATCGTTGACGAGAGTCTCATCCCAGAACACGGAGCGCCCAC CACGTTCGTCATCGACCTTGACCCCATCTCCTTCGGCACTTTCATCGAGG GCGTCGCAGAGATCGCACGGGGTACTGCGGACGTGGTCGGAGCCGGCGTA GGCGTGTCGGCACGCGTGCCCCCTCCGACCCCAGGGCAGATCGGCCAGTC CTGTGGGTCGACGCAGATGAGCGACTGGAACGAGCTCCAGAAGGAGGAGA ACCTGGAGAACTACCTCCAAGACCGGCGAGATGGAGGTGAATAAGAATCA GTGTAACAAGTCAATGTGCCCCTCTTCCCTCGTGTGCCCCGCACCCGATG AAACCACCTCATCAACGCTCCCTGTTCAATGGAATATCTTGCTACCATGG CGTGCATCTGACCCTTTCAATGAAGTATGGCTCACCCGTCGCTCCTCCGT GTGCCCCGCACCCCACGTACCCACGGCACCCCCGCTGGTTGCTCCATTGA ATATAAGAATGACGTGGCGTGTGTCTGACCATTGAATTGAATATTTACTT GTTCCTGTGCCCTTCCATAAGAGGGGGGATTTCGTTGTGGTGGTCGTTGT CATACACATTTACACGCTCGTGTTGTTGTTCGCGCGGTCCCTTGCTCTTC TCCCACCCATCGTTTGTTGTTGTTCTGTGCTCTCGGTCCTCGGTGCTGTC ACAGCGAGGGGCGGCCTGACCGTCGCTCAGTGGGCAAACCCGACGACAGA GGAACAAAGGAAGAAGAAGAAGAAGAAGAGGTTGGAGGACGATGCCAAGG GAGGTGAGTCTTTACTCGGGTGCCAGTCACCCAACGCAACCAACTCATCC CCGCTCCCTGCTCCATAGAATGTGTTGATACCGTGGCGTGCAATGGACCA TGATGTGGCCTCGGGGTCCGATCACGCAATAGTGTTCAATCATTGTGGTA TTGTTATGACCAGGTGGTATGGCTTCCGTCCCCCCAGCCCCCCCATGTAC ACACGGCGCTCCCCGCTTCCTTTTCCCGTCGAATGGCATGCTACCAATGC GTGTAACTGATTCTGGATCGAAGATAAATTGTGATATTGGTATTGTTACC TTAACAGTCGATCGAACGCGATACCTCTGTTGTTGTTGCTGTTGTTGTTG GCTGTTGTTGTTGGACTTGTCGCCATGAGCTCTCCTTCCTTCATAACGTC ATAACGCCCACATTAATCGAATACATACGCAAATATAACGTAGCAACCCT GTTCAAAGCATATATATATATATACGATGCCACAAAATGCGTGCATTTGA CCCTCTGAGTGAAATATCGCTCAGCCAGCTGGACCCTGGGCAGCTCTGTT GCATGTGTATCACCAGATAATATGTCACTCCAGACCTCACTTGGGTTACC CATCCTGTTCACCAGCCTTGAACAGTGGTCCCGGTTACGGTGGCGTCGGA AAGCCCTTCAACAGCGGCAACGGGGCCGTCGCGAGGGGCTTCAGTGCCGA GGGCGCGAAAGACGAGTGGTACGGGCTCCACCTCGACATCCCAACGAGAG ATCTCGCCGCGAAACTTCGACTCCTGGTGCAGCCGGATGGGAGCCTGCAG GACCCCCCTCTGTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:3230703..3232967-

>mRNA_C-linearis_contig11.1374.1 ID=mRNA_C-linearis_contig11.1374.1|Name=mRNA_C-linearis_contig11.1374.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig11:3230703..3232967- (Chordaria linearis ClinC8C monoicous)
ATGTGCATGACCGTCCACGACCCGGCCGCGCCGCCATCCTTCAAGCAGCT
GGAGGTCGGGGTGGCGGACGCCAGCAAGGCGAAGGGTGGCAACAGCGTCA
ACCCATTCCGGACCGACTCTGACGGCGAACCAGACGTCCGGGGGTCCCAC
TGCCCGGCGGGCTCGTACCACATCATGGACGAGGTGGGCACCGGGACCAT
CTCCCATGCGCATCACCAGGCTATCGTTGACGAGAGTCTCATCCCAGAAC
ACGGAGCGCCCACCACGTTCGTCATCGACCTTGACCCCATCTCCTTCGGC
ACTTTCATCGAGGGCGTCGCAGAGATCGCACGGGGTACTGCGGACGTGGT
CGGAGCCGGCGTAGGCGTGTCGGCACGCGTGCCCCCTCCGACCCCAGGGC
AGATCGGCCAGTCCTGTGGGTCGACGCAGATGAGCGACTGGAACGAGCTC
CAGAAGGAGGAGAACCTGGAGAACTACCTCCAAGACCGGCGAGATGGAGA
TGTGCATGACCGTCCACGACCCGGCCGCGCCGCCATCCTTCAAGCAGCTG
GAGGTCGGGGTGGCGGACGCCAGCAAGGCGAAGGGTGGCAACAGCGTCAA
CCCATTCCGGACCGACTCTGACGGCGAACCAGACGTCCGGGGGTCCCACT
GCCCGGCGGGCTCGTACCACATCATGGACGAGGTGGGCACCGGGACCATC
TCCCATGCGCATCACCAGGCTATCGTTGACGAGAGTCTCATCCCAGAACA
CGGAGCGCCCACCACGTTCGTCATCGACCTTGACCCCATCTCCTTCGGCA
CTTTCATCGAGGGCGTCGCAGAGATCGCACGGGGTACTGCGGACGTGGTC
GGAGCCGGCGTAGGCGTGTCGGCACGCGTGCCCCCTCCGACCCCAGGGCA
GATCGGCCAGTCCTGTGGGTCGACGCAGATGAGCGACTGGAACGAGCTCC
AGAAGGAGGAGAACCTGGAGAACTACCTCCAAGACCGGCGAGATGGAGCC
TTGAACAGTGGTCCCGGTTACGGTGGCGTCGGAAAGCCCTTCAACAGCGG
CAACGGGGCCGTCGCGAGGGGCTTCAGTGCCGAGGGCGCGAAAGACGAGT
GGTACGGGCTCCACCTCGACATCCCAACGAGAGATCTCGCCGCGAAACTT
CGACTCCTGGTGCAGCCGGATGGGAGCCTGCAGGACCCCCCTCTGTGACC
TTGAACAGTGGTCCCGGTTACGGTGGCGTCGGAAAGCCCTTCAACAGCGG
CAACGGGGCCGTCGCGAGGGGCTTCAGTGCCGAGGGCGCGAAAGACGAGT
GGTACGGGCTCCACCTCGACATCCCAACGAGAGATCTCGCCGCGAAACTT
CGACTCCTGGTGCAGCCGGATGGGAGCCTGCAGGACCCCCCTCTGTGA
back to top