mRNA_C-linearis_contig11.1370.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1370.1
Unique NamemRNA_C-linearis_contig11.1370.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 418 bits (1074), Expect = 1.440e-135
Identity = 221/335 (65.97%), Postives = 257/335 (76.72%), Query Frame = 3
Query:  474 GMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAE----------------------LVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKREHDSRNF 1409
            GMRLA+ ADFSLLLV+RLEELR HP+KYFP+LLA+AE TL E E                      L HFM NF   +SG F EMI RW KWMDMHQHLPYSMARLACSSF+E KW GSE+A EHAVGQE+ARA LL LWPEL E AEW  W+EEH +LE+L  DL EA TT+ KD+LT GMFSKL+ASA FR E+E+Y+ SA EK+ +V+D   E+Q  RVSGF+MIW+FP LYEWA HAI FAPIHQQLV+SV STYDTCTQKHDSREI IVRLGQFRS QSRRV+R +ATN E+R+AGD+ I VAR LKK+A+ A+PN+ QLRKR  D++ F
Sbjct:  413 GMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEEVSANAAQTLLLFDPVPYCPMLQLAHFMRNFQNEKSGLFREMIARWTKWMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQF 747          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 2.570e-124
Identity = 186/251 (74.10%), Postives = 212/251 (84.46%), Query Frame = 3
Query:  660 MIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKREHDSRNF 1409
            MI RW  WMDMHQHLPYSMARLACSSF+E KW GSE+AFEHAVGQE+ARA LL LWPELYE AEW  W+EEH +LE+L  DL EA TT+ KD+LT GMFSKL+ASA FR E+E+YA SA EK+ +V+D   ENQ  RVSGF+MIW+FP LYEWACHAI FAPIHQQLVES FST+DTCTQKHDSREIDIVRLGQFRS  SRRV+R  ATN E+R+AGD+AI VAR LKK+A+HA+PNERQLRKR HD++ F
Sbjct:    1 MIARWTIWMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQF 251          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 8.420e-102
Identity = 185/314 (58.92%), Postives = 204/314 (64.97%), Query Frame = 3
Query:  471 PGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKREHDSRNF 1409
            PGMRLAEAADFSLLLVKRLE  +                                                         SM RLACSSFYE KW GSEE FEHAVGQE ARALLL  WP  YE  EW+ WEE++TF E               +KLTLGMFSKL+ASA FREELE+YA+SAHEK+ VV DV  ENQT RVSGF+MIW FPQLYEWACHA++FAPIHQQLVES  STYDT TQKHDSRE+DIVRLGQF SR SRRVER +++N E+R  GD+AI VA  LKK+ASHAVPNERQLR  EHD R F
Sbjct:  139 PGMRLAEAADFSLLLVKRLERSQRM-------------------------------------------------------SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKF 382          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 6.990e-90
Identity = 151/245 (61.63%), Postives = 184/245 (75.10%), Query Frame = 3
Query:  684 MDMHQHLP-YSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVI--DVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKREHDSRNF 1409
            MD H   P     +++    YE KW G+++A EHAVG+EFARALL+ LWPE  E AEWR W+EEH  L +LEGDL EATT   KDKLT GM+++L+ SA FR+E+E YA+SAHEK+ V+  D+  +N   RVS F MIWNFP LYEWA HAI+ A IH+QLV SVFS YDTCTQ+HDSREIDIVRLGQFRS QSRR+ + +A+N E+R+AG++AI  ARAL+K AS AVPNERQ RKR HD   F
Sbjct:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQF 245          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 8.930e-64
Identity = 134/306 (43.79%), Postives = 180/306 (58.82%), Query Frame = 3
Query:  471 PGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKR 1388
            PGMRL E ADFS LL+ +LE +R  P+ YF  +L   +TTL EA    FM NF   + GFF E  +RW+KWM+ HQ LP SMAR+ C SF+    +  E A E AVG EFARA L V W  LYE  E R+ E E  +   L  DL   T  + KD+LT G+FS++ +    R ELE+YA+S    + V     +      S    +++FP LY+  CH  YF PIHQQL+E+ FS +D+C QK D  E+DIVR+G ++S +SR +  ++AT  ++R AG + +E AR  K  +    P E   RKR
Sbjct:  164 PGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAMAKLFMTNFSE-DKGFFAEFKQRWIKWMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYE-GEPRT-EREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGWGDKEV----DQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 3.450e-52
Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = 1
Query:    1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERL 468
            FMGPLGKGSWHEWE  H+ +LLG +WYNTSRS SS  +++R++ ++         W+ KFIRPAETRWMVV D A LL ERW+ V WL  ++AA  L  T F +YW +S CML DPL+RVH  F+  L +++  WAYNWI G+GG+F+KG G V  RL
Sbjct:    6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGNFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRL 162          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.110e-51
Identity = 88/161 (54.66%), Postives = 111/161 (68.94%), Query Frame = 1
Query:    1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQG 477
            FMGPLGKGSWHEWE  H+ +LLG +WYNTSRS SS   ++R++ ++         W+ KFIRPAETRWMVV D A LL ERW+ V WL  ++AA  L  T F +YW +S CML DPL+RVH  F+  L +++  WAYNWI G+GG+F+KG G V  RL  G
Sbjct:    6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLSPG 165          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.030e-49
Identity = 120/300 (40.00%), Postives = 165/300 (55.00%), Query Frame = 3
Query:  471 PGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVH-FMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPN 1367
            P MRL EAADFS LL+++LE +R  P+ Y   LL    TTL +      F +    G+  F  E  +RW+K M  HQ LP SMAR+ C SFY    +    A E AVG EFARA   V WP LYE  E R+ E E  +   L  DL   T  + KD+LTLG+FS +      R ELE+YA+S    + +     E+     S    +++ P LY   CH  YF PIHQQL+E+ FS YD+C +K D  E+D+VR+G ++S +SR +   +A + ++R AG + ++ A   K  +    PN
Sbjct:  164 PAMRLVEAADFSCLLLQKLETIRKDPQTYVAALLDRVRTTLSDPMRGESFRVELQRGQF-FIAEFKKRWIKSMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYE-GEPRT-ERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEI----DESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 9.540e-45
Identity = 104/240 (43.33%), Postives = 133/240 (55.42%), Query Frame = 3
Query:  471 PGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTC 1190
            PGMRL E ADFS LL+++LE +R  P+ YF  LL     TL +  +  FM+ F   +  FF E  +RW+KWM  HQ LP SMAR+ C SFY    +    A E AVG EFARA L V WP LYE  E R+ E E  +   L  DL   T  + KD+LT G+FS +      R ELE+YA+S    + +     E+     S    + +FP LY+  CH  YF PIHQQL+E+ FS    C
Sbjct:   90 PGMRLVEVADFSRLLLQKLETIRKDPKTYFAALLDRVRATLSDPMVKFFMLAFSE-DRVFFAEFKKRWIKWMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFLHVAWPGLYE-GEPRT-EREREYRTQLVKDLGGTTEARRKDELTFGLFSCIDGDLSVRSELEQYANSGWGNKEI----DESAPKSTSELARLLDFPLLYQLVCHRFYFVPIHQQLIEAFFSKNIVC 322          
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.630e-39
Identity = 100/223 (44.84%), Postives = 126/223 (56.50%), Query Frame = 3
Query:  579 AETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRS 1247
            AET    AE  HFM+NF   +S FF E   RW KWM  HQ LP SMAR+ C SFY    +  + A E AVG E+ARA L V WPE YE  E RS E E  +   L  D       + KD+LT G+FS +   A  R E+E YA S    + V +   +  TA V  FE    FP+LY++ C   YF PIHQQL+E+ FS YDTC +K D   +D VR+G +++
Sbjct:  151 AETRWMVAEKKHFMVNFSE-DSFFFAEFNMRWKKWMQRHQELPLSMARIGCPSFYARMGIMGKGAVEQAVGPEYARAFLHVGWPERYE-GEPRS-EREREYRVQLGEDFGGVIDARRKDELTFGLFSIVEEDAEMRCEVEGYAESGFGDKEVDEEAEKGTTALVRLFE---KFPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKTDVAVMDSVRVGSWQT 367          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JU73_9PHAE1.440e-13565.97Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ3_9PHAE2.570e-12474.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE8.420e-10258.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXZ1_ECTSI6.990e-9061.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIQ1_ECTSI8.930e-6443.79Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KSR2_9PHAE3.450e-5255.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JW26_9PHAE1.110e-5154.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI13_9PHAE2.030e-4940.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW8_9PHAE9.540e-4543.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KR45_9PHAE1.630e-3944.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3196271..3198005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1412
Cds size936
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1370.1prot_C-linearis_contig11.1370.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3196747..3198005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.4615006-UTR-C-linearis_contig11:3196270..31967461622927465.4615006-UTR-C-linearis_contig11:3196270..3196746Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3196271..3196746 +
1690879716.8667915-UTR-C-linearis_contig11:3196270..31967461690879716.8667915-UTR-C-linearis_contig11:3196270..3196746Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3196271..3196746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.4789102-CDS-C-linearis_contig11:3196746..31968751622927465.4789102-CDS-C-linearis_contig11:3196746..3196875Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3196747..3196875 +
1690879716.876839-CDS-C-linearis_contig11:3196746..31968751690879716.876839-CDS-C-linearis_contig11:3196746..3196875Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3196747..3196875 +
1622927465.4973166-CDS-C-linearis_contig11:3197198..31980051622927465.4973166-CDS-C-linearis_contig11:3197198..3198005Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3197199..3198005 +
1690879716.8864198-CDS-C-linearis_contig11:3197198..31980051690879716.8864198-CDS-C-linearis_contig11:3197198..3198005Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3197199..3198005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1370.1

>prot_C-linearis_contig11.1370.1 ID=prot_C-linearis_contig11.1370.1|Name=mRNA_C-linearis_contig11.1370.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=312bp
MRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMN
FGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAF
EHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQ
AKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVIDVLGENQTARVSG
FEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIV
RLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQ
LRKREHDSRNF*
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mRNA from alignment at C-linearis_contig11:3196271..3198005+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1370.1 ID=mRNA_C-linearis_contig11.1370.1|Name=mRNA_C-linearis_contig11.1370.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1735bp|location=Sequence derived from alignment at C-linearis_contig11:3196271..3198005+ (Chordaria linearis ClinC8C monoicous)
TTCATGGGCCCTCTTGGCAAAGGTTCCTGGCATGAGTGGGAGGACCACCA CCTCGTAGCTCTGCTGGGAACTCTTTGGTACAACACAAGCAGGTCTGATT CGTCTTGCATTTCCTGGCGCCGTTTTCAAAACCTCATCGAGGGCGTGAAG GGCGTAACCTGGGTGTGCAAGTTCATCAGACCCGCGGAAACACGCTGGAT GGTGGTTTGGGATGCGGCCGCCTTGCTTGAAGAGCGTTGGGATGCGGTTA GGTGGCTGCATATGGACTGGGCTGCGTCAAAGCTTCTTGGCACGCCCTTC ATGGATTACTGGTACAAGTCGCTCTGCATGTTGGACGACCCTCTCATGCG AGTACACGCGAAGTTCAGCGTAGCTCTCAGAAAAGTAGTGCTCAGCTGGG CGTACAACTGGATTCGCGGGGAAGGTGGCTACTTCGTCAAGGGTACGGGT GGCGTGGCGGAGCGTCTACCCCAGGGATGCGGTTGGCGGAGGCAGCTGAC TTCTCCCTCCTACTGGTGAAGCGACTCGAGGAGCTTCGAGCGCACCCGAG GAAATATTTTCCAGAGCTGCTCGCCTTCGCCGAAACGACCCTGAAGGAGG CCGAGGTGGGTCAGGACAAAGCGTTTCTAGGTTGTAGGGTTGACGTGCAC CCGCAGTAAAGGGTTGGTTGGACCCGGCGTGCACGAGCTGCTTCGTCCCT GCTGTCCTGAGCACTCGCAGTCGGCAAGCAGTGCCCGCCCTTTCGTTTGT CACCCAATATTGCTGCCAAAAAAATAAACCGCCCGCGCTCTCTCTCTTCT TTCTGCTAAATGTTTTCCTGCTTTCTTTTTGTGCGCTTCCCTGCCGCCCC CGACGGGCAGCTAATAGCGCCGTCCAAACCTTACACCTTGCACCCGTCGA CTCCCTCCCCTACTGCCGTATGCTGCAGCTTGTACATTTCATGATGAACT TTGGAACGGGGGAAAGCGGCTTCTTTTGGGAGATGATCGAGCGCTGGCTA AAATGGATGGACATGCACCAGCATCTCCCCTACAGCATGGCGAGGTTGGC TTGCAGTTCGTTCTACGAGAGCAAGTGGGTGGGTTCGGAGGAGGCTTTCG AACACGCTGTCGGCCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGG CCTGAGCTGTACGAGGACGCGGAGTGGAGGTCGTGGGAGGAGGAACACAC GTTTCTCGAAGTGTTGGAGGGTGACCTTTTGGAAGCAACTACCACCCAGG CAAAAGATAAGCTGACACTTGGCATGTTTTCGAAGTTGAGTGCGAGTGCT GGGTTCAGGGAGGAGTTGGAGAAGTATGCCTCATCTGCGCACGAGAAGAG GGTTGTAATCGACGTGCTTGGCGAGAACCAGACAGCGAGGGTCTCGGGCT TTGAAATGATTTGGAATTTCCCCCAGCTCTACGAATGGGCGTGCCATGCA ATTTATTTTGCCCCAATTCATCAGCAACTAGTCGAGAGCGTTTTCTCCAC GTACGATACATGCACACAGAAACATGATTCTAGGGAGATTGATATCGTTC GCCTTGGGCAGTTCCGCTCACGCCAGTCTAGGAGAGTAGAGCGATCGAAT GCCACCAACGCCGAAGTCCGGAAAGCAGGAGACGAGGCAATAGAAGTTGC GAGGGCGTTGAAAAAGACTGCCTCTCACGCGGTTCCGAATGAGAGGCAGC TTCGAAAACGAGAGCACGACTCAAGAAATTTTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3196271..3198005+

>mRNA_C-linearis_contig11.1370.1 ID=mRNA_C-linearis_contig11.1370.1|Name=mRNA_C-linearis_contig11.1370.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at C-linearis_contig11:3196271..3198005+ (Chordaria linearis ClinC8C monoicous)
ATGCGGTTGGCGGAGGCAGCTGACTTCTCCCTCCTACTGGTGAAGCGACT
CGAGGAGCTTCGAGCGCACCCGAGGAAATATTTTCCAGAGCTGCTCGCCT
TCGCCGAAACGACCCTGAAGGAGGCCGAGATGCGGTTGGCGGAGGCAGCT
GACTTCTCCCTCCTACTGGTGAAGCGACTCGAGGAGCTTCGAGCGCACCC
GAGGAAATATTTTCCAGAGCTGCTCGCCTTCGCCGAAACGACCCTGAAGG
AGGCCGAGCTTGTACATTTCATGATGAACTTTGGAACGGGGGAAAGCGGC
TTCTTTTGGGAGATGATCGAGCGCTGGCTAAAATGGATGGACATGCACCA
GCATCTCCCCTACAGCATGGCGAGGTTGGCTTGCAGTTCGTTCTACGAGA
GCAAGTGGGTGGGTTCGGAGGAGGCTTTCGAACACGCTGTCGGCCAGGAG
TTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCCTGAGCTGTACGAGGACGC
GGAGTGGAGGTCGTGGGAGGAGGAACACACGTTTCTCGAAGTGTTGGAGG
GTGACCTTTTGGAAGCAACTACCACCCAGGCAAAAGATAAGCTGACACTT
GGCATGTTTTCGAAGTTGAGTGCGAGTGCTGGGTTCAGGGAGGAGTTGGA
GAAGTATGCCTCATCTGCGCACGAGAAGAGGGTTGTAATCGACGTGCTTG
GCGAGAACCAGACAGCGAGGGTCTCGGGCTTTGAAATGATTTGGAATTTC
CCCCAGCTCTACGAATGGGCGTGCCATGCAATTTATTTTGCCCCAATTCA
TCAGCAACTAGTCGAGAGCGTTTTCTCCACGTACGATACATGCACACAGA
AACATGATTCTAGGGAGATTGATATCGTTCGCCTTGGGCAGTTCCGCTCA
CGCCAGTCTAGGAGAGTAGAGCGATCGAATGCCACCAACGCCGAAGTCCG
GAAAGCAGGAGACGAGGCAATAGAAGTTGCGAGGGCGTTGAAAAAGACTG
CCTCTCACGCGGTTCCGAATGAGAGGCAGCTTCGAAAACGAGAGCACGAC
TCAAGAAATTTTTGACTTGTACATTTCATGATGAACTTTGGAACGGGGGA
AAGCGGCTTCTTTTGGGAGATGATCGAGCGCTGGCTAAAATGGATGGACA
TGCACCAGCATCTCCCCTACAGCATGGCGAGGTTGGCTTGCAGTTCGTTC
TACGAGAGCAAGTGGGTGGGTTCGGAGGAGGCTTTCGAACACGCTGTCGG
CCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCCTGAGCTGTACG
AGGACGCGGAGTGGAGGTCGTGGGAGGAGGAACACACGTTTCTCGAAGTG
TTGGAGGGTGACCTTTTGGAAGCAACTACCACCCAGGCAAAAGATAAGCT
GACACTTGGCATGTTTTCGAAGTTGAGTGCGAGTGCTGGGTTCAGGGAGG
AGTTGGAGAAGTATGCCTCATCTGCGCACGAGAAGAGGGTTGTAATCGAC
GTGCTTGGCGAGAACCAGACAGCGAGGGTCTCGGGCTTTGAAATGATTTG
GAATTTCCCCCAGCTCTACGAATGGGCGTGCCATGCAATTTATTTTGCCC
CAATTCATCAGCAACTAGTCGAGAGCGTTTTCTCCACGTACGATACATGC
ACACAGAAACATGATTCTAGGGAGATTGATATCGTTCGCCTTGGGCAGTT
CCGCTCACGCCAGTCTAGGAGAGTAGAGCGATCGAATGCCACCAACGCCG
AAGTCCGGAAAGCAGGAGACGAGGCAATAGAAGTTGCGAGGGCGTTGAAA
AAGACTGCCTCTCACGCGGTTCCGAATGAGAGGCAGCTTCGAAAACGAGA
GCACGACTCAAGAAATTTTTGA
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