mRNA_C-linearis_contig11.1366.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1366.1
Unique NamemRNA_C-linearis_contig11.1366.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: D7FXX6_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX6_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 1.740e-103
Identity = 147/179 (82.12%), Postives = 154/179 (86.03%), Query Frame = 1
Query:    1 MSLTCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWPPEF 537
            MSLT AKRLRKEMHKLQ+SPPDEDIRMSADEDDIR WRAY+RGPPDTPFAGGI                   YELKITVGQQYPMVPP M F+TKVFHPNVHFNTGEICLNILKK+WSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRS+ARLY EELA+KDWP +F
Sbjct:    1 MSLTSAKRLRKEMHKLQTSPPDEDIRMSADEDDIRQWRAYIRGPPDTPFAGGI-------------------YELKITVGQQYPMVPPCMRFVTKVFHPNVHFNTGEICLNILKKDWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSVARLYNEELASKDWPADF 160          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A6S9GG99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GG99_HETAK)

HSP 1 Score: 202 bits (514), Expect = 1.040e-63
Identity = 97/170 (57.06%), Postives = 125/170 (73.53%), Query Frame = 1
Query:   19 KRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
            KRL+KE+  L+ S  D DI++  + +++R  + ++RGPPDTPFAGGI                   YELKI +GQQYPMVPP+M F+TK+FHPN+HF+TGEICL+ILKKEWSPAW LQ ACRAI+A+++ P ADSPLNCDAGNMVRA DMRA+ S+A +Y+ E A  + P
Sbjct:    5 KRLKKELENLKKSD-DNDIKLYENPENMRKIQGFIRGPPDTPFAGGI-------------------YELKIDIGQQYPMVPPTMEFVTKIFHPNIHFDTGEICLDILKKEWSPAWGLQAACRAIIAIMSDPAADSPLNCDAGNMVRAEDMRAYGSIASMYRIEHALTEMP 154          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A7S2UYB8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYB8_9STRA)

HSP 1 Score: 201 bits (510), Expect = 3.810e-63
Identity = 98/176 (55.68%), Postives = 124/176 (70.45%), Query Frame = 1
Query:    1 MSLTCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
            M+L  +KRLRKE+  L+ SP D DI +  D ++IR  + ++RGPP TPF  GI                   YEL+I + Q YPMVPPSM F+TK+FHPNVHF+TGEICL+ILK EWSPAW LQ ACRA++AL++ P ADSPLNCDAGNM+RAGDMRA+ ++A +Y+ E A K  P
Sbjct:    1 MALASSKRLRKEIQNLKKSP-DSDIFLIPDPNNIRSIQGFIRGPPSTPFENGI-------------------YELQIDISQNYPMVPPSMKFVTKIFHPNVHFDTGEICLDILKSEWSPAWGLQPACRAVIALMSDPAADSPLNCDAGNMIRAGDMRAYHAVASMYQIEYALKSVP 156          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A835Z5T9_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T9_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.190e-62
Identity = 95/176 (53.98%), Postives = 121/176 (68.75%), Query Frame = 1
Query:    1 MSLTCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
            MS+ C KRLR E   ++S   D DI + + E DIR W+A++RGPP TP+ GG+                   +EL +TVG QYP+VPP++ F+T+VFHPNVHF TG ICL++L + W+PAW LQ  CRA+LALL+ P ADSPLNCDAGNM+RAGD  AF SMAR+Y  E AA+D P
Sbjct:    1 MSMACFKRLRME---IKSMSDDPDIFLESSESDIRRWKAHIRGPPGTPYEGGV-------------------FELDLTVGMQYPLVPPAVTFVTRVFHPNVHFTTGAICLDVLSRAWTPAWGLQATCRALLALLSDPAADSPLNCDAGNMIRAGDACAFESMARMYTLEHAARDMP 154          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A7S1VE29_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE29_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.540e-58
Identity = 92/180 (51.11%), Postives = 121/180 (67.22%), Query Frame = 1
Query:    7 LTCAKRLRKEMHKLQSSPPDED---IRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAA-KDWPPE 534
            L  AKRLRKE+  L+ S  + D   +R +  E+ I +W A ++GPPDT + GG+                   ++L I  G  YP+VPP++ F+TK+FHPN+HF TG++CL+ILKKEWSPAW LQ ACRA+LALL+ P+ADSPLNCDAGNMVR+ DM A+RS AR+Y  E A   +WP E
Sbjct:    6 LAAAKRLRKELQNLEKSKHEVDDVFLRPTNPEESILMWTALLKGPPDTAYEGGV-------------------FQLNIRCGSDYPLVPPNIKFMTKIFHPNIHFKTGDVCLDILKKEWSPAWGLQAACRAVLALLSDPDADSPLNCDAGNMVRSNDMLAYRSTARMYTVENAMFLEWPKE 166          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A7S2SP60_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP60_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.280e-57
Identity = 91/170 (53.53%), Postives = 117/170 (68.82%), Query Frame = 1
Query:   19 KRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
            KRLRKE+  ++    DE+I +  +ED+IR W+AY+RGPP T + G +                   Y + I VG +YP+ PP + F+TKVFHPNV+F+TGEICL+ILK+ WSPAWSLQ ACRAI+ALLA P+ DSP NCDAGNM+RAGD+ AF S+ RLY EE    D+P
Sbjct:   30 KRLRKELSSIRKER-DEEIELQPNEDNIRQWQAYIRGPPGTAYQGKV-------------------YCMSIHVGAEYPLEPPKVTFLTKVFHPNVNFSTGEICLDILKRNWSPAWSLQAACRAIIALLADPDVDSPWNCDAGNMIRAGDLVAFESIVRLYAEEHGLDDFP 179          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A448YY37_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY37_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.730e-57
Identity = 91/178 (51.12%), Postives = 120/178 (67.42%), Query Frame = 1
Query:    1 MSLTCAKRLRKEMHKLQ-SSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAA-KDWP 528
            ++L  AKRLRKE+  L+ +  PD DI +  D ++I  W A +RGP DTP++GG+                   ++L I  G  YP+ PPS+ F+T+VFHPNVHF TG++CL+ILKKEWSPAW +Q ACRAILALL+ P+ADSPLNCDAGNM+R GDM A+ + AR++  E A    WP
Sbjct:    3 LNLAAAKRLRKELQNLKRTKEPDPDIYLIPDGNNILQWTALLRGPSDTPYSGGV-------------------FQLAIDCGADYPLAPPSITFVTRVFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMFTVENAMFLAWP 161          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A2D4BF74_PYTIN (Ubiquitin-conjugating enzyme E2, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF74_PYTIN)

HSP 1 Score: 181 bits (458), Expect = 3.140e-55
Identity = 90/173 (52.02%), Postives = 115/173 (66.47%), Query Frame = 1
Query:   10 TCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
            T  KRLRKE+ +L+ +  +ED+ +  +ED I  WRA++RGP DTPFAG         +C          +EL I     YPM PP M F+TK+FHPNVHF  G ICL+ILK+EWSPAW+L+ AC A+++LL+ P ADSPLNCDAGNM+RAGDM A+ SMA +Y  E    D P
Sbjct:    3 TNVKRLRKELQELRKNK-EEDMVLFPEEDTIMRWRAFIRGPADTPFAG---------RC----------FELAIQTTPLYPMEPPKMKFVTKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNSMASMYTREHGLPDLP 155          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A1E7FW51_9STRA (Ubiquitin-conjugating enzyme n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW51_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.920e-55
Identity = 90/177 (50.85%), Postives = 116/177 (65.54%), Query Frame = 1
Query:    4 SLTCAKRLRKEMHKLQ-SSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAA-KDWP 528
            +L  AKRLRKE+  L+ +   D DI +  D D+I  W A ++GP DTP+A G+                   ++L I  G  YP+ PP + F+TK+FHPNVHF TG++CL+ILKKEWSPAW +Q ACRAILALL+ P+ADSPLNCDAGNM+R GDM A+ + AR+Y  E A    WP
Sbjct:    4 NLAAAKRLRKELQNLERAKEQDPDIFLIPDGDNILRWTALLKGPCDTPYAEGV-------------------FQLAIDCGSDYPLSPPKIKFLTKIFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMYSVENAMFLAWP 161          
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A4D9CWL3_9STRA (UBC core domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWL3_9STRA)

HSP 1 Score: 179 bits (455), Expect = 4.580e-55
Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = 1
Query:   64 DEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEE 507
            D D+ +   ED+IRLW A ++GP +TPF GG                    +EL+I VG  YP+ PP + F+T +FHPN+HF TGEICL+ILKKEWSPAWSLQ ACRA++ALLA P+A+SPLNCDAGNM+R GD+RA+ +MARLY  E
Sbjct:    3 DTDMELWPQEDNIRLWHAIIQGPGETPFEGGT-------------------FELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRGGDVRAYNAMARLYTVE 131          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXX6_ECTSI1.740e-10382.12UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6S9GG99_HETAK1.040e-6357.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UYB8_9STRA3.810e-6355.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z5T9_9STRA2.190e-6253.98Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S1VE29_9STRA2.540e-5851.11Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2SP60_9STRA2.280e-5753.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A448YY37_9STRA4.730e-5751.12UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
A0A2D4BF74_PYTIN3.140e-5552.02Ubiquitin-conjugating enzyme E2, putative n=1 Tax=... [more]
A0A1E7FW51_9STRA3.920e-5550.85Ubiquitin-conjugating enzyme n=1 Tax=Fragilariopsi... [more]
A0A4D9CWL3_9STRA4.580e-5556.08UBC core domain-containing protein n=2 Tax=Monodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3168875..3170710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.7
Seed ortholog evalue2.9e-80
Seed eggNOG ortholog2880.D7FXX6
KEGG koko:K10689
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0001650,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0008150,GO:0008152,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0016043,GO:0016310,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030522,GO:0031056,GO:0031058,GO:0031098,GO:0031323,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032182,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033554,GO:0033674,GO:0034097,GO:0034641,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043122,GO:0043123,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0045739,GO:0045859,GO:0045860,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051438,GO:0051443,GO:0051716,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902531,GO:1902533,GO:1903320,GO:1903322,GO:1903506,GO:1905269,GO:1990234,GO:2000112,GO:2001020,GO:2001022,GO:2001141,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons5
Model size540
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1366.1prot_C-linearis_contig11.1366.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3168875..3170710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927464.8927953-CDS-C-linearis_contig11:3168874..31689721622927464.8927953-CDS-C-linearis_contig11:3168874..3168972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3168875..3168972 -
1690879716.50627-CDS-C-linearis_contig11:3168874..31689721690879716.50627-CDS-C-linearis_contig11:3168874..3168972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3168875..3168972 -
1622927464.9072063-CDS-C-linearis_contig11:3169214..31692841622927464.9072063-CDS-C-linearis_contig11:3169214..3169284Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3169215..3169284 -
1690879716.518846-CDS-C-linearis_contig11:3169214..31692841690879716.518846-CDS-C-linearis_contig11:3169214..3169284Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3169215..3169284 -
1622927464.9220083-CDS-C-linearis_contig11:3169780..31698401622927464.9220083-CDS-C-linearis_contig11:3169780..3169840Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3169781..3169840 -
1690879716.5278974-CDS-C-linearis_contig11:3169780..31698401690879716.5278974-CDS-C-linearis_contig11:3169780..3169840Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3169781..3169840 -
1622927464.9346325-CDS-C-linearis_contig11:3170109..31702521622927464.9346325-CDS-C-linearis_contig11:3170109..3170252Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3170110..3170252 -
1690879716.5376492-CDS-C-linearis_contig11:3170109..31702521690879716.5376492-CDS-C-linearis_contig11:3170109..3170252Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3170110..3170252 -
1622927464.9459074-CDS-C-linearis_contig11:3170541..31707101622927464.9459074-CDS-C-linearis_contig11:3170541..3170710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3170542..3170710 -
1690879716.5485811-CDS-C-linearis_contig11:3170541..31707101690879716.5485811-CDS-C-linearis_contig11:3170541..3170710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3170542..3170710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1366.1

>prot_C-linearis_contig11.1366.1 ID=prot_C-linearis_contig11.1366.1|Name=mRNA_C-linearis_contig11.1366.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=180bp
MSLTCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFA
GGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPN
VHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNM
VRAGDMRAFRSMARLYKEELAAKDWPPEF*
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mRNA from alignment at C-linearis_contig11:3168875..3170710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1366.1 ID=mRNA_C-linearis_contig11.1366.1|Name=mRNA_C-linearis_contig11.1366.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1836bp|location=Sequence derived from alignment at C-linearis_contig11:3168875..3170710- (Chordaria linearis ClinC8C monoicous)
ATGTCTCTGACTTGCGCGAAGCGGTTGCGAAAAGAGATGCACAAGCTGCA AAGCTCCCCGCCGGACGAAGACATCCGGATGTCTGCCGACGAGGATGACA TTCGGCTGTGGCGGGCCTACGTCAGGGGGCCGCCGGACACGCCGTTTGCA GGAGGTATTGGAAACAAATGTAGATAAATAGAGCAAGATGAAGGCTGTGT GTCCCCGGCGAATTGACACCCCCAGCCATACGCTGCCGTTGGTGTGCTAG AGTCGTCTGCACCAGCGGGGGTATAATGAAGTGTTCTTTCTCTCAACCGC TGTAGTCTAATACTTCGAAGTAGGCTAGACTCGTAGATACCAAAACCGAG ACCGGACAAGTGTACCTACTGCTGTGGCGAATGCAAGTTCGTTTGTTGTT TGGAGAGTTTTGGTGCGCGTCGCAATTTGTAGCGTTCTCGACATTTGTCC TGTACCAGTGGGTACGTGCCAATGTAGAGCCTATCCCTCCATCCCAATAG GGATTTACGAGCTCAAGATCACAGTGGGGCAGCAGTACCCTATGGTTCCT CCGTCGATGCACTTCATCACCAAGGTCTTCCACCCGAACGTACACTTCAA CGTGAGTTTGGTGAACAACCGCAGCAGCAGCAGTGACTGCAGCAACAAGA ACAGCGGAGGCGCAAGCGTTGGCCGGCTGAAATACCAGCGCAGACCAAGA AGAGTCCATTGGAAATCATGGCGCGCCGAAATGGCCGGGAGTCGCTGGGT ATTTCCTACCATAGTTTTCTACCTTGAGAGTTTGCCGAGGTGTCTAGATT GATGTTTTTATGTATGAACCGTAGACCAAACTTCTGCTTTCCCCTTGTGT GCTTGTCCTACCCTTTTCAGACAGGTGAGATTTGCTTGAACATCCTCAAA AAAGAGTGGTCTCCTGCGTGGAGCTTGCAGGTGGGTTTACCTCTCGACGT GAGGTAACTTTAGCTTTGTTGTTTTACGCGCACAGGTGCTGCAGCATCTA CCATTGTGTTGTAGGGAATATCGTCAGCCTTGGAACATAGAGAGACCGCG CTAGAAAAGTGACTGCAGAAACACAGAAGTTGCTTGAAATATCTCGGGTA GCACCTACTTCGATTTGGAAGTGTTTGGTGTCGCCGCTGCGTTGCTCAGG GGGAAACGGTTGCGATCGCGATCACACGAAAGGGAACGCTACCAAGCGTA CTGCTGTACAAAATAAAAAAATAACTCCTTGGCAGATGCCTCACGAGACG GCGTGGCTGACTGATACCAAAGCACCTTACCATCCTGACAAGCTACCTGA ATTACAGAGCTATATGCCGATGCGGTTTGGATGCTGGCTCCTAGTGACAC ATATGTTCCGCTTTTCACACCCTTCCGACTCGCTCCGATTGCTCCCTTTT TGTGTGTGCTTCGTTTGCTCGCCCAGGGAGCCTGCAGAGCGATCCTGGCG CTGCTTGCCCACCCGGAGGCTGACAGTCCCCTCAACTGCGACGCAGGTCA GTGAACACTCCCCCCCGCCGCCGCCACCACCTACGATATGTGTGTTCGGT TAGTTCTGTTAGTTGGGAGGTGTTGTTTTTCTCCCACGTCATTGCCCCCC CCCCTTTTTTTTTCGCATGGATCGTCTGTCCTGAAGATCGGAACCTCGCT TGTGCCATGGTGACTTGACTGCTCTGATCCTTTTGTCCCCGCCTTTTTCC GGGTTGCCCCGTGTGCCTGCTTTGTATGTGTATGGTAGGGAACATGGTGA GAGCAGGCGACATGCGCGCCTTTCGCTCCATGGCTCGACTGTACAAGGAG GAGCTAGCGGCCAAGGATTGGCCGCCAGAGTTTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3168875..3170710-

>mRNA_C-linearis_contig11.1366.1 ID=mRNA_C-linearis_contig11.1366.1|Name=mRNA_C-linearis_contig11.1366.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at C-linearis_contig11:3168875..3170710- (Chordaria linearis ClinC8C monoicous)
ATGTCTCTGACTTGCGCGAAGCGGTTGCGAAAAGAGATGCACAAGCTGCA
AAGCTCCCCGCCGGACGAAGACATCCGGATGTCTGCCGACGAGGATGACA
TTCGGCTGTGGCGGGCCTACGTCAGGGGGCCGCCGGACACGCCGTTTGCA
GGAGGTATTGGAAACAAATATGTCTCTGACTTGCGCGAAGCGGTTGCGAA
AAGAGATGCACAAGCTGCAAAGCTCCCCGCCGGACGAAGACATCCGGATG
TCTGCCGACGAGGATGACATTCGGCTGTGGCGGGCCTACGTCAGGGGGCC
GCCGGACACGCCGTTTGCAGGAGGTATTGGAAACAAATTGGGTACGTGCC
AATGTAGAGCCTATCCCTCCATCCCAATAGGGATTTACGAGCTCAAGATC
ACAGTGGGGCAGCAGTACCCTATGGTTCCTCCGTCGATGCACTTCATCAC
CAAGGTCTTCCACCCGAACGTACACTTCAACTGGGTACGTGCCAATGTAG
AGCCTATCCCTCCATCCCAATAGGGATTTACGAGCTCAAGATCACAGTGG
GGCAGCAGTACCCTATGGTTCCTCCGTCGATGCACTTCATCACCAAGGTC
TTCCACCCGAACGTACACTTCAACACAGGTGAGATTTGCTTGAACATCCT
CAAAAAAGAGTGGTCTCCTGCGTGGAGCTTGCAGACAGGTGAGATTTGCT
TGAACATCCTCAAAAAAGAGTGGTCTCCTGCGTGGAGCTTGCAGGGAGCC
TGCAGAGCGATCCTGGCGCTGCTTGCCCACCCGGAGGCTGACAGTCCCCT
CAACTGCGACGCAGGGAGCCTGCAGAGCGATCCTGGCGCTGCTTGCCCAC
CCGGAGGCTGACAGTCCCCTCAACTGCGACGCAGGGAACATGGTGAGAGC
AGGCGACATGCGCGCCTTTCGCTCCATGGCTCGACTGTACAAGGAGGAGC
TAGCGGCCAAGGATTGGCCGCCAGAGTTTTGAGGAACATGGTGAGAGCAG
GCGACATGCGCGCCTTTCGCTCCATGGCTCGACTGTACAAGGAGGAGCTA
GCGGCCAAGGATTGGCCGCCAGAGTTTTGA
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