mRNA_C-linearis_contig11.1366.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: D7FXX6_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX6_ECTSI) HSP 1 Score: 303 bits (775), Expect = 1.740e-103 Identity = 147/179 (82.12%), Postives = 154/179 (86.03%), Query Frame = 1
Query: 1 MSLTCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWPPEF 537
MSLT AKRLRKEMHKLQ+SPPDEDIRMSADEDDIR WRAY+RGPPDTPFAGGI YELKITVGQQYPMVPP M F+TKVFHPNVHFNTGEICLNILKK+WSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRS+ARLY EELA+KDWP +F
Sbjct: 1 MSLTSAKRLRKEMHKLQTSPPDEDIRMSADEDDIRQWRAYIRGPPDTPFAGGI-------------------YELKITVGQQYPMVPPCMRFVTKVFHPNVHFNTGEICLNILKKDWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSVARLYNEELASKDWPADF 160
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A6S9GG99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GG99_HETAK) HSP 1 Score: 202 bits (514), Expect = 1.040e-63 Identity = 97/170 (57.06%), Postives = 125/170 (73.53%), Query Frame = 1
Query: 19 KRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
KRL+KE+ L+ S D DI++ + +++R + ++RGPPDTPFAGGI YELKI +GQQYPMVPP+M F+TK+FHPN+HF+TGEICL+ILKKEWSPAW LQ ACRAI+A+++ P ADSPLNCDAGNMVRA DMRA+ S+A +Y+ E A + P
Sbjct: 5 KRLKKELENLKKSD-DNDIKLYENPENMRKIQGFIRGPPDTPFAGGI-------------------YELKIDIGQQYPMVPPTMEFVTKIFHPNIHFDTGEICLDILKKEWSPAWGLQAACRAIIAIMSDPAADSPLNCDAGNMVRAEDMRAYGSIASMYRIEHALTEMP 154
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A7S2UYB8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYB8_9STRA) HSP 1 Score: 201 bits (510), Expect = 3.810e-63 Identity = 98/176 (55.68%), Postives = 124/176 (70.45%), Query Frame = 1
Query: 1 MSLTCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
M+L +KRLRKE+ L+ SP D DI + D ++IR + ++RGPP TPF GI YEL+I + Q YPMVPPSM F+TK+FHPNVHF+TGEICL+ILK EWSPAW LQ ACRA++AL++ P ADSPLNCDAGNM+RAGDMRA+ ++A +Y+ E A K P
Sbjct: 1 MALASSKRLRKEIQNLKKSP-DSDIFLIPDPNNIRSIQGFIRGPPSTPFENGI-------------------YELQIDISQNYPMVPPSMKFVTKIFHPNVHFDTGEICLDILKSEWSPAWGLQPACRAVIALMSDPAADSPLNCDAGNMIRAGDMRAYHAVASMYQIEYALKSVP 156
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A835Z5T9_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T9_9STRA) HSP 1 Score: 199 bits (505), Expect = 2.190e-62 Identity = 95/176 (53.98%), Postives = 121/176 (68.75%), Query Frame = 1
Query: 1 MSLTCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
MS+ C KRLR E ++S D DI + + E DIR W+A++RGPP TP+ GG+ +EL +TVG QYP+VPP++ F+T+VFHPNVHF TG ICL++L + W+PAW LQ CRA+LALL+ P ADSPLNCDAGNM+RAGD AF SMAR+Y E AA+D P
Sbjct: 1 MSMACFKRLRME---IKSMSDDPDIFLESSESDIRRWKAHIRGPPGTPYEGGV-------------------FELDLTVGMQYPLVPPAVTFVTRVFHPNVHFTTGAICLDVLSRAWTPAWGLQATCRALLALLSDPAADSPLNCDAGNMIRAGDACAFESMARMYTLEHAARDMP 154
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A7S1VE29_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE29_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.540e-58 Identity = 92/180 (51.11%), Postives = 121/180 (67.22%), Query Frame = 1
Query: 7 LTCAKRLRKEMHKLQSSPPDED---IRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAA-KDWPPE 534
L AKRLRKE+ L+ S + D +R + E+ I +W A ++GPPDT + GG+ ++L I G YP+VPP++ F+TK+FHPN+HF TG++CL+ILKKEWSPAW LQ ACRA+LALL+ P+ADSPLNCDAGNMVR+ DM A+RS AR+Y E A +WP E
Sbjct: 6 LAAAKRLRKELQNLEKSKHEVDDVFLRPTNPEESILMWTALLKGPPDTAYEGGV-------------------FQLNIRCGSDYPLVPPNIKFMTKIFHPNIHFKTGDVCLDILKKEWSPAWGLQAACRAVLALLSDPDADSPLNCDAGNMVRSNDMLAYRSTARMYTVENAMFLEWPKE 166
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A7S2SP60_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP60_9STRA) HSP 1 Score: 187 bits (474), Expect = 2.280e-57 Identity = 91/170 (53.53%), Postives = 117/170 (68.82%), Query Frame = 1
Query: 19 KRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
KRLRKE+ ++ DE+I + +ED+IR W+AY+RGPP T + G + Y + I VG +YP+ PP + F+TKVFHPNV+F+TGEICL+ILK+ WSPAWSLQ ACRAI+ALLA P+ DSP NCDAGNM+RAGD+ AF S+ RLY EE D+P
Sbjct: 30 KRLRKELSSIRKER-DEEIELQPNEDNIRQWQAYIRGPPGTAYQGKV-------------------YCMSIHVGAEYPLEPPKVTFLTKVFHPNVNFSTGEICLDILKRNWSPAWSLQAACRAIIALLADPDVDSPWNCDAGNMIRAGDLVAFESIVRLYAEEHGLDDFP 179
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A448YY37_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY37_9STRA) HSP 1 Score: 186 bits (471), Expect = 4.730e-57 Identity = 91/178 (51.12%), Postives = 120/178 (67.42%), Query Frame = 1
Query: 1 MSLTCAKRLRKEMHKLQ-SSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAA-KDWP 528
++L AKRLRKE+ L+ + PD DI + D ++I W A +RGP DTP++GG+ ++L I G YP+ PPS+ F+T+VFHPNVHF TG++CL+ILKKEWSPAW +Q ACRAILALL+ P+ADSPLNCDAGNM+R GDM A+ + AR++ E A WP
Sbjct: 3 LNLAAAKRLRKELQNLKRTKEPDPDIYLIPDGNNILQWTALLRGPSDTPYSGGV-------------------FQLAIDCGADYPLAPPSITFVTRVFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMFTVENAMFLAWP 161
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A2D4BF74_PYTIN (Ubiquitin-conjugating enzyme E2, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF74_PYTIN) HSP 1 Score: 181 bits (458), Expect = 3.140e-55 Identity = 90/173 (52.02%), Postives = 115/173 (66.47%), Query Frame = 1
Query: 10 TCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAAKDWP 528
T KRLRKE+ +L+ + +ED+ + +ED I WRA++RGP DTPFAG +C +EL I YPM PP M F+TK+FHPNVHF G ICL+ILK+EWSPAW+L+ AC A+++LL+ P ADSPLNCDAGNM+RAGDM A+ SMA +Y E D P
Sbjct: 3 TNVKRLRKELQELRKNK-EEDMVLFPEEDTIMRWRAFIRGPADTPFAG---------RC----------FELAIQTTPLYPMEPPKMKFVTKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNSMASMYTREHGLPDLP 155
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A1E7FW51_9STRA (Ubiquitin-conjugating enzyme n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW51_9STRA) HSP 1 Score: 181 bits (458), Expect = 3.920e-55 Identity = 90/177 (50.85%), Postives = 116/177 (65.54%), Query Frame = 1
Query: 4 SLTCAKRLRKEMHKLQ-SSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEELAA-KDWP 528
+L AKRLRKE+ L+ + D DI + D D+I W A ++GP DTP+A G+ ++L I G YP+ PP + F+TK+FHPNVHF TG++CL+ILKKEWSPAW +Q ACRAILALL+ P+ADSPLNCDAGNM+R GDM A+ + AR+Y E A WP
Sbjct: 4 NLAAAKRLRKELQNLERAKEQDPDIFLIPDGDNILRWTALLKGPCDTPYAEGV-------------------FQLAIDCGSDYPLSPPKIKFLTKIFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMYSVENAMFLAWP 161
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Match: A0A4D9CWL3_9STRA (UBC core domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWL3_9STRA) HSP 1 Score: 179 bits (455), Expect = 4.580e-55 Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = 1
Query: 64 DEDIRMSADEDDIRLWRAYVRGPPDTPFAGGIGNKLGTCQCRAYPSIPIGIYELKITVGQQYPMVPPSMHFITKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSMARLYKEE 507
D D+ + ED+IRLW A ++GP +TPF GG +EL+I VG YP+ PP + F+T +FHPN+HF TGEICL+ILKKEWSPAWSLQ ACRA++ALLA P+A+SPLNCDAGNM+R GD+RA+ +MARLY E
Sbjct: 3 DTDMELWPQEDNIRLWHAIIQGPGETPFEGGT-------------------FELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRGGDVRAYNAMARLYTVE 131 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1366.1 >prot_C-linearis_contig11.1366.1 ID=prot_C-linearis_contig11.1366.1|Name=mRNA_C-linearis_contig11.1366.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=180bp MSLTCAKRLRKEMHKLQSSPPDEDIRMSADEDDIRLWRAYVRGPPDTPFAback to top mRNA from alignment at C-linearis_contig11:3168875..3170710- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1366.1 ID=mRNA_C-linearis_contig11.1366.1|Name=mRNA_C-linearis_contig11.1366.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1836bp|location=Sequence derived from alignment at C-linearis_contig11:3168875..3170710- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:3168875..3170710- >mRNA_C-linearis_contig11.1366.1 ID=mRNA_C-linearis_contig11.1366.1|Name=mRNA_C-linearis_contig11.1366.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at C-linearis_contig11:3168875..3170710- (Chordaria linearis ClinC8C monoicous)back to top |