mRNA_C-linearis_contig11.1358.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1358.1
Unique NamemRNA_C-linearis_contig11.1358.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: A0A6H5KVN5_9PHAE (HIT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVN5_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 3.110e-70
Identity = 137/206 (66.50%), Postives = 155/206 (75.24%), Query Frame = 2 
Query:  149 RVVAAASLVRAASGRGPSWLGRADLAFAVQTQRASPFLSSCTSRA-WSSRIGSGITPSARIATVLRHMSATPGGEEEKAKAVAAAGGDGAGE--TIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            R +A AS +R AS R  + +G +DLAF V  +RA P  S+   RA  +S     ITP +RIATV+R+MS+ PG                     TIFDKIISK IPADIIHED+LCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAV+SNKALLGHLMF+AQKVA+EQGLD+GFRVVVNDG QGCQTVYHLH+HVIGGRQL WPPG
Sbjct:    3 RAIATASFIRVASLRSFAVVG-SDLAFGV-VKRAPPPSSAWIGRASCTSSSSCRITPRSRIATVIRNMSSNPGXXXXXXXXXXXXXXXXXXXEATIFDKIISKEIPADIIHEDELCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVESNKALLGHLMFVAQKVAKEQGLDEGFRVVVNDGVQGCQTVYHLHIHVIGGRQLKWPPG 206
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: A0A5B8MF15_9CHLO (Histidine triad family protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MF15_9CHLO)

HSP 1 Score: 195 bits (495), Expect = 6.190e-55
Identity = 94/134 (70.15%), Postives = 112/134 (83.58%), Query Frame = 2 
Query:  362 GGEEEKAKAVAAAGG--DGAGETIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            GG EE A   AAA G  D  G TIFDK+ISK IPAD+I+EDD CLAF+DI+PQAPVHFLVIPK+RDGLT+LSKA + +K +LGHL++ AQKVA+++GL +GFRV +NDG  GCQ+VYHLHLHVIGGRQL WPPG
Sbjct:    2 GGNEEAAAKQAAAEGLVDNEGPTIFDKVISKEIPADVIYEDDKCLAFRDINPQAPVHFLVIPKARDGLTRLSKAHEGHKDILGHLLYTAQKVAKDEGLGEGFRVAINDGPGGCQSVYHLHLHVIGGRQLTWPPG 135
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: A0A7S1SQN7_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SQN7_9CHLO)

HSP 1 Score: 190 bits (482), Expect = 3.160e-53
Identity = 84/122 (68.85%), Postives = 107/122 (87.70%), Query Frame = 2 
Query:  392 AAAGGDGAGETIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            AAA  D  G TIFDKI++K IPAD+I+EDDLCLAF+D++PQAP HFLVIPK+R GLTQLSKAV+++K LLGHL+++AQ VA+++GL +GFR+V+NDG  GCQ+VYHLH+H +GGRQL WPPG
Sbjct:    5 AAADADKEGPTIFDKIVAKEIPADVIYEDDLCLAFRDVNPQAPTHFLVIPKARSGLTQLSKAVEAHKGLLGHLIYVAQDVAKKEGLGEGFRLVINDGPNGCQSVYHLHIHCLGGRQLTWPPG 126
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: A0A7S2HQ92_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2HQ92_9DINO)

HSP 1 Score: 188 bits (477), Expect = 2.140e-52
Identity = 91/133 (68.42%), Postives = 111/133 (83.46%), Query Frame = 2 
Query:  365 GEEEKAKAVAAAGGDGAGE-TIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQ-GFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            GEEEKAKA AAAG DGA + T+FDKI++K +PA +++EDD  LAF+DISPQAP H LVIPK R GLT L KA   +KALLGHLM +A  VA+++GLD+ GFRVVVNDGAQGCQ+V+HLHLH++GGRQ+ WPPG
Sbjct:    3 GEEEKAKAAAAAGDDGAPKVTLFDKIVAKEVPATVVYEDDEALAFRDISPQAPTHILVIPKDRQGLTHLHKATAEHKALLGHLMVVASTVAKQEGLDKDGFRVVVNDGAQGCQSVFHLHLHILGGRQMKWPPG 135
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: A0A061SGY2_9CHLO (Histidine triad (HIT) family protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SGY2_9CHLO)

HSP 1 Score: 189 bits (481), Expect = 2.840e-52
Identity = 89/129 (68.99%), Postives = 109/129 (84.50%), Query Frame = 2 
Query:  371 EEKAKAVAAAGGDGAGETIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            E++A   AAA  D  G TIFDKIISK IPAD+I+EDD CLAF+DI+PQAP HFLVIPK R+GL++LS A D++K LLGHLMF+AQ+VA+++ L +GFRVV+NDG  GCQ+VYHLHLHV+GGRQL WPPG
Sbjct:   56 EQEAALKAAADADKGGPTIFDKIISKEIPADVIYEDDQCLAFRDINPQAPTHFLVIPKVRNGLSRLSNASDAHKPLLGHLMFVAQEVAKQEKLAEGFRVVINDGPNGCQSVYHLHLHVLGGRQLTWPPG 184
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: A0A836C9C8_9STRA (14 kDa zinc-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9C8_9STRA)

HSP 1 Score: 186 bits (473), Expect = 7.810e-52
Identity = 91/136 (66.91%), Postives = 110/136 (80.88%), Query Frame = 2 
Query:  347 MSATPGGEEEKAKAVAAAGGDGAGETIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPP 754
            MS++   E + AKA A A       T+FDKI  K IP+DII+EDD CLAF DISPQAPVHFLVIPK R+G++QLS A + NK LLGHLM++AQ VA++QGL++GFRVVVNDG +GCQ+VYHLHLHV+GGRQLAWPP
Sbjct:    1 MSSSGSKEVDAAKAAAEAPKPAV--TLFDKIAQKQIPSDIIYEDDKCLAFNDISPQAPVHFLVIPKDREGMSQLSTATEDNKPLLGHLMYVAQLVAKQQGLERGFRVVVNDGKEGCQSVYHLHLHVVGGRQLAWPP 134
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: I0Z0W6_COCSC (HIT-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z0W6_COCSC)

HSP 1 Score: 187 bits (475), Expect = 1.800e-51
Identity = 90/134 (67.16%), Postives = 110/134 (82.09%), Query Frame = 2 
Query:  368 EEEKAKAVAAAGGDGAGE----TIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            EE+ AK  AA+G D A +    TIFDKIISK IPA+II+ED+  LAF+DI+PQAPVHFLVIPK RDGLTQLSK  DS++ +LGHL+ +A KVA ++GL+ GFRVV+NDG  GCQ+VYHLHLH++GGRQL WPPG
Sbjct:   48 EEQAAKNAAASGADAAADQGAPTIFDKIISKQIPANIIYEDESALAFRDINPQAPVHFLVIPKHRDGLTQLSKCNDSHEKVLGHLLVVASKVALQEGLNDGFRVVINDGVNGCQSVYHLHLHIVGGRQLTWPPG 181
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: E1Z2V2_CHLVA (HIT domain-containing protein n=2 Tax=Chlorella TaxID=3071 RepID=E1Z2V2_CHLVA)

HSP 1 Score: 183 bits (465), Expect = 9.410e-51
Identity = 87/130 (66.92%), Postives = 109/130 (83.85%), Query Frame = 2 
Query:  368 EEEKAKAVAAAGGDGAGETIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            E EKA+A A+A   GA  TIFDKII+K IPA II+ED+  LAF+DISPQ PVHFLVIPK R+GLTQLSKA + +K LLGHL+++A +VA+++GL QG+RV +NDG  GCQ+VYHLHLH+IGGRQ++WPPG
Sbjct:    4 EAEKAQAAASAADTGA-PTIFDKIIAKQIPAQIIYEDEQALAFRDISPQGPVHFLVIPKVRNGLTQLSKAKEEHKPLLGHLLYVAAQVAKQEGLSQGYRVAINDGPNGCQSVYHLHLHIIGGRQMSWPPG 132
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BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: A0A388K5I6_CHABU (HIT domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388K5I6_CHABU)

HSP 1 Score: 186 bits (472), Expect = 1.520e-50
Identity = 86/139 (61.87%), Postives = 107/139 (76.98%), Query Frame = 2 
Query:  341 RHMSATPGGEEEKAKAVAAAGGDGAGETIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            R  +   G  EE A A   A  D    TIFDKI+ K IP   ++EDD CLAFKDISPQAPVH ++IPK RDGLTQLSKA + +K +LGHL+++AQ VA++QGLD+GFR+V+NDGAQGCQ+VYHLH+H+IGGR + WPPG
Sbjct:   80 RRFTVAMGNSEEAAAATNVALKDTGAPTIFDKIVKKEIPCTSVYEDDKCLAFKDISPQAPVHIVLIPKERDGLTQLSKAEERHKDILGHLLYVAQLVAKQQGLDEGFRIVINDGAQGCQSVYHLHIHIIGGRMMKWPPG 218
[Close]
BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Match: A0A150GQH3_GONPE (HIT domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GQH3_GONPE)

HSP 1 Score: 182 bits (462), Expect = 2.560e-50
Identity = 90/131 (68.70%), Postives = 105/131 (80.15%), Query Frame = 2 
Query:  365 GEEEKAKAVAAAGGDGAGETIFDKIISKAIPADIIHEDDLCLAFKDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVVNDGAQGCQTVYHLHLHVIGGRQLAWPPG 757
            GEE  AKA A    D    TIFDKI++K IPA II+EDD  LAF+DISPQAPVHFLVIPK+R GLT+LSKA + +KALLGHL+F+AQKVA  + L +GFRV +NDG  GCQ+VYHLHLHV+GGRQL WPPG
Sbjct:    4 GEEAAAKAAAHLA-DQDPPTIFDKIVAKQIPATIIYEDDQALAFRDISPQAPVHFLVIPKNRSGLTRLSKATEEHKALLGHLLFVAQKVAMAENLGEGFRVTINDGPNGCQSVYHLHLHVMGGRQLTWPPG 133
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVN5_9PHAE3.110e-7066.50HIT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A5B8MF15_9CHLO6.190e-5570.15Histidine triad family protein n=1 Tax=Chloropicon... [more]
A0A7S1SQN7_9CHLO3.160e-5368.85Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S2HQ92_9DINO2.140e-5268.42Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A061SGY2_9CHLO2.840e-5268.99Histidine triad (HIT) family protein (Fragment) n=... [more]
A0A836C9C8_9STRA7.810e-5266.9114 kDa zinc-binding protein n=1 Tax=Tribonema minu... [more]
I0Z0W6_COCSC1.800e-5167.16HIT-domain-containing protein n=1 Tax=Coccomyxa su... [more]
E1Z2V2_CHLVA9.410e-5166.92HIT domain-containing protein n=2 Tax=Chlorella Ta... [more]
A0A388K5I6_CHABU1.520e-5061.87HIT domain-containing protein n=2 Tax=Chara brauni... [more]
A0A150GQH3_GONPE2.560e-5068.70HIT domain-containing protein n=1 Tax=Gonium pecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3093951..3098135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.9
Seed ortholog evalue2.8e-64
Seed eggNOG ortholog2880.D8LKN0
Preferred nameHINT2
KEGG koko:K02503
Hectar predicted targeting categorysignal peptide
GOsGO:0000118,GO:0003674,GO:0003824,GO:0005080,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006355,GO:0006629,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009889,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010605,GO:0010646,GO:0010647,GO:0012501,GO:0016020,GO:0016042,GO:0016787,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019899,GO:0019900,GO:0019901,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031326,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035556,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050848,GO:0050850,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051716,GO:0055086,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071944,GO:0072331,GO:0072332,GO:0072521,GO:0072523,GO:0080090,GO:0097190,GO:0097193,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901983,GO:1901984,GO:1902494,GO:1902531,GO:1902533,GO:1903506,GO:2000112,GO:2000756,GO:2000757,GO:2001141
EggNOG free text desc.nucleoside phosphate binding
EggNOG OGsCOG0537@1,KOG3275@2759
Ec32 ortholog descriptionHistidine triad (HIT) protein
Ec32 orthologEc-16_003610.1
COG Functional cat.FG
BiGG ReactioniRC1080.CRv4_Au5_s6_g12858_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons5
Model size2399
Cds size687
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.5378282-UTR-C-linearis_contig11:3093950..30940231622927463.5378282-UTR-C-linearis_contig11:3093950..3094023Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3093951..3094023 +
1690879715.6027036-UTR-C-linearis_contig11:3093950..30940231690879715.6027036-UTR-C-linearis_contig11:3093950..3094023Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3093951..3094023 +
1622927463.6096277-UTR-C-linearis_contig11:3096496..30981351622927463.6096277-UTR-C-linearis_contig11:3096496..3098135Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3096497..3098135 +
1690879715.6552026-UTR-C-linearis_contig11:3096496..30981351690879715.6552026-UTR-C-linearis_contig11:3096496..3098135Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3096497..3098135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.5506284-CDS-C-linearis_contig11:3094023..30942471622927463.5506284-CDS-C-linearis_contig11:3094023..3094247Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3094024..3094247 +
1690879715.6119373-CDS-C-linearis_contig11:3094023..30942471690879715.6119373-CDS-C-linearis_contig11:3094023..3094247Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3094024..3094247 +
1622927463.5615585-CDS-C-linearis_contig11:3094911..30951281622927463.5615585-CDS-C-linearis_contig11:3094911..3095128Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3094912..3095128 +
1690879715.619695-CDS-C-linearis_contig11:3094911..30951281690879715.619695-CDS-C-linearis_contig11:3094911..3095128Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3094912..3095128 +
1622927463.5745366-CDS-C-linearis_contig11:3095359..30954881622927463.5745366-CDS-C-linearis_contig11:3095359..3095488Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3095360..3095488 +
1690879715.6279876-CDS-C-linearis_contig11:3095359..30954881690879715.6279876-CDS-C-linearis_contig11:3095359..3095488Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3095360..3095488 +
1622927463.586817-CDS-C-linearis_contig11:3095894..30959781622927463.586817-CDS-C-linearis_contig11:3095894..3095978Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3095895..3095978 +
1690879715.6373305-CDS-C-linearis_contig11:3095894..30959781690879715.6373305-CDS-C-linearis_contig11:3095894..3095978Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3095895..3095978 +
1622927463.597821-CDS-C-linearis_contig11:3096463..30964961622927463.597821-CDS-C-linearis_contig11:3096463..3096496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3096464..3096496 +
1690879715.647175-CDS-C-linearis_contig11:3096463..30964961690879715.647175-CDS-C-linearis_contig11:3096463..3096496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3096464..3096496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1358.1prot_C-linearis_contig11.1358.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3094024..3096496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1358.1

>prot_C-linearis_contig11.1358.1 ID=prot_C-linearis_contig11.1358.1|Name=mRNA_C-linearis_contig11.1358.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=229bp
MLGQLRRLSCPPAALAIALFRLCDRRVVAAASLVRAASGRGPSWLGRADL
AFAVQTQRASPFLSSCTSRAWSSRIGSGITPSARIATVLRHMSATPGGEE
EKAKAVAAAGGDGAGETIFDKIISKAIPADIIHEDDLCLAFKDISPQAPV
HFLVIPKSRDGLTQLSKAVDSNKALLGHLMFIAQKVAREQGLDQGFRVVV
NDGAQGCQTVYHLHLHVIGGRQLAWPPG*
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mRNA from alignment at C-linearis_contig11:3093951..3098135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1358.1 ID=mRNA_C-linearis_contig11.1358.1|Name=mRNA_C-linearis_contig11.1358.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4185bp|location=Sequence derived from alignment at C-linearis_contig11:3093951..3098135+ (Chordaria linearis ClinC8C monoicous)
CATGAGGTCGTAGCGTAAGGGTCTCGTCTTGCAGAGCGAGCAACTCGGCT
AACGATGTTGCAGTTGGTGTTGGATGTTGGGTCAATTGCGCCGCCTCTCC
TGCCCCCCTGCTGCGCTTGCCATTGCTCTGTTCCGCCTTTGTGACAGAAG
AGTGGTCGCTGCAGCAAGCCTAGTCCGGGCAGCGTCAGGAAGAGGACCTT
CGTGGTTGGGGAGGGCTGATCTCGCTTTCGCGGTCCAGACTCAGAGGGCA
TCGCCGTTCTTGTCTTCGTGCACCTCCCGCGCTTGGTCTTCGCGCATGTG
AGACCCGCCGCCTCAGAGACGCACCCGCGACAGAATGTTAATGTTTGTGT
CTATCGTGTGGCAGCTCGTTGTCCATCCGCCCACGAGTATCTGCATGATG
TGCCAGGGCTACTGGTGGTGTAGAAAGGTTCATTTCATTTACGGCGGTGT
GCTTACTTTGCCATGTCGGTTTGTTCGTTTGTTTTGCCACACTCCATATT
TGTGCACCCTTTTTGCCACACACACCGGTGTTGTACTACGTGGATCATCT
GCATGTGCGTTGCGCCCGGACAACTACAGCAGCAGTGGATCGCCGTTGGT
AGTGCAAAGTATTTTACGGTGTCGAGCCGTCGTTGTCTCCTTGTGTGCCG
CTTCCACCGCAGAGTATGCATTGCGCCCCCTAATCGGTGTGCAAGGTCGG
TGTTGGCGGGTTGGGCAAAACCTTTGGTAGATAGTGCCCGGTTGCGCGCA
CTGCTGTTGTCTACGCTTACCCTCTAGAAATTGGCACATCTCGCCTTCGG
AACTCGCGTTGCGTCTGAATGCCACCAGCCTTTCATACTAGATCCAACCC
GATAACTCTCAATTCCAACCAAGTTCAACCCCCCGCTCTCTCTCTCCAAT
GACAATGGCAATGTTATGTTCTGTCAAACCCGTCGCATACTCCATCCCCC
CCTACCTGCAGCGGCAGCGGCATCACCCCTAGCGCTCGCATAGCCACCGT
CCTCCGCCACATGTCGGCCACTCCGGGAGGAGAGGAGGAAAAGGCCAAGG
CCGTTGCCGCCGCCGGGGGCGACGGGGCAGGAGAGACGATCTTCGACAAG
ATCATCTCCAAAGCCATCCCCGCGGACATTATCCACGAGGACGACCTCTG
CCTGGCGTTCAAGGACATCAGCCCACAGGTACGTACGTGCTTCTACGTCG
CAGCGTTCGTTCATCGTCACATCGTCACCCCTAGGTTAAAAGGCAGCAGC
AGCAGCATGAGGACCGGGTAAGAGGCTCACTGGCTCACTGATGCGGACTC
ACGAGGCTGTGGGTTTCTCGAGCACCGATCAGGTCTGATCCGTTTTCCTT
CCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCTTTCCGCCCTCGACGCG
CTCGCTCAGGCACCGGTGCACTTTCTGGTGATCCCCAAGAGCCGGGACGG
CCTGACCCAGCTCAGCAAGGCGGTGGACAGCAACAAGGCCCTGCTCGGCC
ACCTCATGTTCATCGCGCAGAAGGTCGCTAGGGAGCAGGTACGAACGAGC
GTTGCACGGCAGATTCTTAAAGCGAACGATTGCGTAAATCATTTTGATCC
TTAAAGAGTTTTTGTTGTTGTGGTGCCGTCCGAACATCTCTCTCTGTGTC
TCTACGCTGGGGGGGTTGAATGCGATGCTGCAAGCTTGTCCTTGCGTACT
GCTGTGGTAGAGAGAGAGAGAGACGCAAATCCTTTGGCGGTATGTGTGCA
AACAGCAGCTGAAGCTGTCGGAGACATACCAATGCTTGAGGAGGCTTTGG
GGTGATGAGGAAACCCCGCGGAATCGAGTCTCGAACCAACCAGCTGAAAC
CTCGGAACCGATCCTTGACAGCCAAGCTCGGTTGTACGGCACAAACCAAA
TCGAACAATCACAATAATCATCTTCTCTCCTTCGAATACACCAGGGGCTC
GACCAAGGGTTCAGGGTGGTGGTGAACGACGGAGCGCAAGGCTGCCAGAC
CGTCTACCACCTTCACCTCCATGTTATCGTGAGTGTACAAAGAGCAGGCA
TCCGGGGGGTGGTAGAACATATTTCACCGCCTGATTATGTAATGTCGTAC
TAGAGAACATGGCAGGAAGATCGATAGGGGAAGGCGCGACGCAGGCCGGC
TGCGTACAATAGGTCGACTCGGTGCTCAACAGGGGCATTTGTATCGGCGG
GGCGAATTGACCGCGATCTGTACATGCATGTCCCCATGGCATTTGCCCGC
TCGCTTGAACAAATACCCGGCTGCGATTTGCCGACTGCGGAAATGACGAC
CGATTGCGCCTCCTGCTGGTATTCGTCGACTGACAATTCTTGTGTTTTGG
CATGGATAAATTGTTAGGTGCAGCAGTTGGTAGCGCACGTCACTACTACA
AACCTGTTTTAATTTTAGCTTGGCGACACCTCTACTCGACACCCACACTG
CCGCTGCTTGCTTTCTGTTGCCGCCTGTTCGTGTGCTTGTTCGGATTGGG
TGCTTCAAAATAGGGGGGGCGGCAGCTGGCGTGGCCACCAGGGTAAAAAT
CAGCCGAAATTTCTCCGAGATCGGTTTCTGCAGCGTACGTGGCTCAACGG
GGTACTGGGTGGGCTTTGTGAGTTCAACGAAGGTGGTGGGCTTGGCGGTG
TCCGTGGGCCTGAGGGTCCGGAGGGGGGTATCGGCAGTCGCATGGCGCGC
ACTCTTCATGGTGCCCTCGCGGGGGTCTTTACCTGTGGTTGCCCGCTCGT
ACCCGTATCGTTCCAGTACTTCATCGGTGCGAGTGTTAGTTGAGATGCAA
CAGGGTTCTCGGGGTGGAAAGCCCGAAAACAGAGAAAGAGAGAAAAGGTG
CCCGCAGTTTTCTGATTGGCCAATATTTTTGAAGGGAAATTTCCGGTTGG
CGAAAAATCCCTGATCGAACCGGTGACGACATCCACGGTCGTGAATTCGC
CTTTCGGGAAAACTACAGAATTCAAATTCGCCGTGAGTGTCTGATTGATG
GGTTGATGAGCCCAGGCAGCATCCGGGAATCGCCGAGCACTTTCACTCCA
GAGCTGACCATTGATTGGTGGACTTGCTGACCGGCCACTGGGACCATCGT
GTGTAGAGTGAAACATATGGGCTCGGAAGCACATATCGACCCATCGGCGA
AATAGTCTTCCCTCACTGAGACCGCATTCCTACAGCACATCTCTTCCAAC
GTTGAACAGATCTCTCTGCACTCTCTGCATGACGCCATGACAGCAGAGTA
CGCCACAACTGCGGCAGTGAGACTCCTACAGCGATATGACCTGGCAGCTC
ATTACGTGATTTTGCTTTGTAGCACGCCTTGGGAAGAATCAGAGAGGGAG
GCAGGGAGGCAGGCACAGAGCTCGTCATGATTGCGGATTTATTGCAGAAG
TTATTTTTGATGGGAAGACCCGAGCCTTTCAACGGGCGATGCTCTTCGGC
CGCGATCGAACCCTGTGGGTACACGCAGCAGAGTGACGTGTTTCTACGCT
CAACATGTCGTCGGAAACGTTGAAAACTGATGCGTATGGTTCAACTTGCG
ATGCTTTTTGTGTTCCCAGCGCGAACGGTCTAAAGTCTCCCTGGCCATCA
GGCATGCGCATGCAGACACCAAGAGTTCGGACATCTCTTTGTCGCTCTCG
CGGCGCCGCGAGTGGAATTCCATTCCTTGATGAAAACAAAGCCTTTAGCA
AAAACAGCAGAGTTTTCTCGACAAAAGCAACGTGCCGGCTGGCAACTTGG
TGCAACAATTAACCCGACGATTCGGAGCGTGTACAATACGGCGAACACAC
GGGCCTGTGGTAGTCACACTCTGCACACCTACAAGACGAAGCACAAGACG
AAGCACAGCACATGTACGAGGTAGATCTAGATCTAGGGTTGCCGGGCGTT
GTGTGCGCCAACCACCGTCTATTTTATTGCCACCTTTGGCGCGCCCGCCA
GTGCACTCGAACATGCTACTTCTCTAGCGGCGCTCGTTGACAAGTGAATC
AAGAGGAATACCCACACCACCCTGCCTTGAGCCTGGCCAGAACCATCCGG
ATCTCCCAGTACTCCGCGGTGGGCGCTAACTCCTTCACCTCCTTCAGCCT
CACAGAGTCCCACCGCCCCGTCTCGCCCGCCCCCTTGGCCCCCTCCGCGC
CGTCTTCAGCTCCCGCCCGCGGTGCGACTCTCGCA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3093951..3098135+

>mRNA_C-linearis_contig11.1358.1 ID=mRNA_C-linearis_contig11.1358.1|Name=mRNA_C-linearis_contig11.1358.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at C-linearis_contig11:3093951..3098135+ (Chordaria linearis ClinC8C monoicous)
ATGTTGGGTCAATTGCGCCGCCTCTCCTGCCCCCCTGCTGCGCTTGCCAT
TGCTCTGTTCCGCCTTTGTGACAGAAGAGTGGTCGCTGCAGCAAGCCTAG
TCCGGGCAGCGTCAGGAAGAGGACCTTCGTGGTTGGGGAGGGCTGATCTC
GCTTTCGCGGTCCAGACTCAGAGGGCATCGCCGTTCTTGTCTTCGTGCAC
CTCCCGCGCTTGGTCTTCGCGCATATGTTGGGTCAATTGCGCCGCCTCTC
CTGCCCCCCTGCTGCGCTTGCCATTGCTCTGTTCCGCCTTTGTGACAGAA
GAGTGGTCGCTGCAGCAAGCCTAGTCCGGGCAGCGTCAGGAAGAGGACCT
TCGTGGTTGGGGAGGGCTGATCTCGCTTTCGCGGTCCAGACTCAGAGGGC
ATCGCCGTTCTTGTCTTCGTGCACCTCCCGCGCTTGGTCTTCGCGCATCG
GCAGCGGCATCACCCCTAGCGCTCGCATAGCCACCGTCCTCCGCCACATG
TCGGCCACTCCGGGAGGAGAGGAGGAAAAGGCCAAGGCCGTTGCCGCCGC
CGGGGGCGACGGGGCAGGAGAGACGATCTTCGACAAGATCATCTCCAAAG
CCATCCCCGCGGACATTATCCACGAGGACGACCTCTGCCTGGCGTTCAAG
GACATCAGCCCACAGCGGCAGCGGCATCACCCCTAGCGCTCGCATAGCCA
CCGTCCTCCGCCACATGTCGGCCACTCCGGGAGGAGAGGAGGAAAAGGCC
AAGGCCGTTGCCGCCGCCGGGGGCGACGGGGCAGGAGAGACGATCTTCGA
CAAGATCATCTCCAAAGCCATCCCCGCGGACATTATCCACGAGGACGACC
TCTGCCTGGCGTTCAAGGACATCAGCCCACAGGCACCGGTGCACTTTCTG
GTGATCCCCAAGAGCCGGGACGGCCTGACCCAGCTCAGCAAGGCGGTGGA
CAGCAACAAGGCCCTGCTCGGCCACCTCATGTTCATCGCGCAGAAGGTCG
CTAGGGAGCAGGCACCGGTGCACTTTCTGGTGATCCCCAAGAGCCGGGAC
GGCCTGACCCAGCTCAGCAAGGCGGTGGACAGCAACAAGGCCCTGCTCGG
CCACCTCATGTTCATCGCGCAGAAGGTCGCTAGGGAGCAGGGGCTCGACC
AAGGGTTCAGGGTGGTGGTGAACGACGGAGCGCAAGGCTGCCAGACCGTC
TACCACCTTCACCTCCATGTTATCGGGCTCGACCAAGGGTTCAGGGTGGT
GGTGAACGACGGAGCGCAAGGCTGCCAGACCGTCTACCACCTTCACCTCC
ATGTTATCGGGGGGCGGCAGCTGGCGTGGCCACCAGGGTAAGGGGGGCGG
CAGCTGGCGTGGCCACCAGGGTAA
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