mRNA_C-linearis_contig11.1356.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1356.1
Unique NamemRNA_C-linearis_contig11.1356.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1356.1 vs. uniprot
Match: D8LKM8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM8_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 7.490e-38
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:   76 QPRQVRYQCGLCSQSYAATVTGNPWWLLVRQECPACHKMQIPRVDILNPTNNVERHIAFLTEACAETGSDGDVSFMDWDGDTSD 327
            +PR+VRYQCG C+ SYAATV+GNPWWLLVRQECP CHKMQIPRVDILNPTNNVE HIAFLTE      SDGD S MDWDG+TSD
Sbjct:  327 EPREVRYQCGACAASYAATVSGNPWWLLVRQECPICHKMQIPRVDILNPTNNVESHIAFLTE----NASDGDGSCMDWDGETSD 406
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BLAST of mRNA_C-linearis_contig11.1356.1 vs. uniprot
Match: A0A6H5KT72_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT72_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.350e-21
Identity = 48/59 (81.36%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:  151 WLLVRQECPACHKMQIPRVDILNPTNNVERHIAFLTEACAETGSDGDVSFMDWDGDTSD 327
            WLLVRQECP CHKMQIPRVDILNPTNNVE HIAFLTE      SDGD S MDWDG+TSD
Sbjct:  477 WLLVRQECPTCHKMQIPRVDILNPTNNVESHIAFLTE----NASDGDGSCMDWDGETSD 531
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BLAST of mRNA_C-linearis_contig11.1356.1 vs. uniprot
Match: A0A835YXC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.610e-8
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   37 KRRRSSVLPAALLQPRQVRYQCGLCSQSYAATVTGNPWWLLVRQECPACHKMQIPRVDILNPTNNVERHIAFLTEACAETGSDGDV 294
            KR RSS++P  L + R+V Y+C LC + YAAT++ NPWW LV            PR+DI  P N ++ H   L+    ++  +GD 
Sbjct:  196 KRPRSSLMPV-LTKEREVWYECALCKEHYAATISCNPWWALV------------PRIDIALPVNGID-HAQVLSACADDSDMEGDT 267
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKM8_ECTSI7.490e-3879.76TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KT72_9PHAE1.350e-2181.36TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YXC4_9STRA5.610e-838.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3081469..3083359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue3e-32
Seed eggNOG ortholog2880.D8LKM8
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.TAZ zinc finger
EggNOG OGs2BJCE@1,2S1FW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size434
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1356.1prot_C-linearis_contig11.1356.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3081478..3083359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.3411746-UTR-C-linearis_contig11:3081468..30814771622927463.3411746-UTR-C-linearis_contig11:3081468..3081477Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3081469..3081477 +
1690879715.469502-UTR-C-linearis_contig11:3081468..30814771690879715.469502-UTR-C-linearis_contig11:3081468..3081477Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3081469..3081477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.3577-CDS-C-linearis_contig11:3081477..30816171622927463.3577-CDS-C-linearis_contig11:3081477..3081617Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3081478..3081617 +
1690879715.4836812-CDS-C-linearis_contig11:3081477..30816171690879715.4836812-CDS-C-linearis_contig11:3081477..3081617Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3081478..3081617 +
1622927463.3733413-CDS-C-linearis_contig11:3082242..30823661622927463.3733413-CDS-C-linearis_contig11:3082242..3082366Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3082243..3082366 +
1690879715.4947026-CDS-C-linearis_contig11:3082242..30823661690879715.4947026-CDS-C-linearis_contig11:3082242..3082366Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3082243..3082366 +
1622927463.385952-CDS-C-linearis_contig11:3082695..30827791622927463.385952-CDS-C-linearis_contig11:3082695..3082779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3082696..3082779 +
1690879715.5037768-CDS-C-linearis_contig11:3082695..30827791690879715.5037768-CDS-C-linearis_contig11:3082695..3082779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3082696..3082779 +
1622927463.3979118-CDS-C-linearis_contig11:3083284..30833591622927463.3979118-CDS-C-linearis_contig11:3083284..3083359Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3083285..3083359 +
1690879715.5138726-CDS-C-linearis_contig11:3083284..30833591690879715.5138726-CDS-C-linearis_contig11:3083284..3083359Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3083285..3083359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1356.1

>prot_C-linearis_contig11.1356.1 ID=prot_C-linearis_contig11.1356.1|Name=mRNA_C-linearis_contig11.1356.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
MLLVPPRPSKRRRSSVLPAALLQPRQVRYQCGLCSQSYAATVTGNPWWLL
VRQECPACHKMQIPRVDILNPTNNVERHIAFLTEACAETGSDGDVSFMDW
DGDTSDDNSGDESGDERDAQGSSAGGGGGGGTVNGGDGGSG
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mRNA from alignment at C-linearis_contig11:3081469..3083359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1356.1 ID=mRNA_C-linearis_contig11.1356.1|Name=mRNA_C-linearis_contig11.1356.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1891bp|location=Sequence derived from alignment at C-linearis_contig11:3081469..3083359+ (Chordaria linearis ClinC8C monoicous)
GGGGGGAGCATGCTGCTGGTGCCGCCACGGCCGTCGAAACGACGAAGGTC
GTCCGTCTTGCCGGCGGCGCTGCTGCAGCCTCGTCAGGTCCGGTACCAGT
GCGGACTGTGCAGCCAGAGCTACGCGGCGACCGTGACCGGCAACCCGTGG
TGCGTTTGCTACATCCATCCCGCATCCTTTTTTGTTGTTGTACATAACCG
CATCCTCTTTGTTGCTGTTGTTGTAACCTCATGTTTTGAGTTCAGCAAGC
CCTCCCCCCCCCCCCCCCGTCAATAGCTGCTCGAAAAGGTTTGGGTTACC
TGAGTCTGGCCTCCGTTTTTTCGGATTTTGGGACGGTAAAAGCTTCTTTT
TTACCCGGTTGCAGTGAAAGCCATCCTCGAGGACCCCTCCCCCCTCTCTC
AAAAGAGTGTTTGTTTGCCTTCCGTTCTGTGGTTGGCGTGACCTGCGGCA
GATGAAACGGAGATTGTTCATGTGCCATGTCTCGTTCTGTTCGCTACGAT
GATCCTGTTTCGTGTGTACGAAAGAAACGAAAGCAACAACTTATGCTGCG
TGCGTTTTTTTATTGGCGCGTGCATGTAACTTCCGTGCATTCCTTGTGTC
GGAAAAATCCAGACCGCTTAAATGTACCCGGCTGCATTCGTGGTGAACAC
TCGGCGGCCCTCTCAAATTTGTGTAGCGGTGATACGGAGCGGCGGCGGTC
GTTGTCCGTTTTGTGTCTTTTTCTTGTAACGTTCCTCTCGGTCTGAATGT
CTGAATGTCTGCATGTCTGCCTAGGTGGTTACTGGTGAGGCAGGAGTGCC
CGGCGTGCCACAAGATGCAGATCCCTCGCGTCGACATCTTGAATCCCACC
AACAACGTGGAGCGCCACATCGCCTTCCTCACGGAAGCGTGCGCAGAGGT
ACCATATGCACGAGCGCTGTGCGATACATACGGCTCATGGATATTTGTGG
TTGGGTGTTTCAGTCGCTGGAGGGGGGGCAGGGCTCTGCTTCGTACTTGC
TACGCGGCATACTTCTACATGCCCTATATCGACTTCCACATGTAATTTAG
TGCAGTTGTATGTGTGTGTGTGTGTGTGTGTGTGTTTTTTGGCGTGAGAC
TGTTGTAGGCATACCATTCCGGTCCTTGATGCCCCCTCACCACACATTCT
TGCTCCCCCTCTTGCTCTCCCTTTCATTGCATGATCGGGCGAACGATAAC
GATTCCCCGGCCTCGGCGTGTGCGCAGACTGGGTCTGACGGCGACGTGAG
CTTCATGGACTGGGACGGGGACACGAGTGACGACAACTCAGGGGACGAGT
CGGGGGACGAGGTTGGACGTGTGATGCGTGATTTGTGATGTGTGATGTGT
GATGTGTGCCGCAAGAAGCGGCAGAAGTGGCACGATACCCTCATTTTTGC
CTCACCACCCACCATTCAGCACCGCGTATTATCTGAAACGCGGTGCGGTC
TTTCGCGATGAGGACCTCCCGAGTGCAATGTCGAGGTCGGTCGGATCTGA
TTTTGTGCGGCGCCCCCGCGTACGTTCTATCAAGAGTATCTCGTCATTCG
TGTTTTGTCAACGCTCACTTGTCGGTTTGTCGTCGGGTGCGCGTCGAACG
GTTCCGTCTGCCCATCTAGCCATCCGCCCTTCTCCCGGTTGATCTTGTTG
TTACTTTCTCGTCGCTTTCCCTGCGCCTTCGCTACCACCCACGCCCCTCT
CATGCTTACCCCGGCCATAACCCAATCCGCCCCTGAAAGCCCCTTAGCAT
GCACATGCCTCTCACTCTCCCCTCCGTCTTGTCCGCGCCCTGCCGTCCAC
CGACCGTATAATTTAGCGAGACGCACAAGGGTCCTCGGCAGGAGGAGGAG
GAGGAGGAGGAACCGTTAACGGCGGCGACGGCGGGAGTGGG
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Coding sequence (CDS) from alignment at C-linearis_contig11:3081469..3083359+

>mRNA_C-linearis_contig11.1356.1 ID=mRNA_C-linearis_contig11.1356.1|Name=mRNA_C-linearis_contig11.1356.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig11:3081469..3083359+ (Chordaria linearis ClinC8C monoicous)
ATGCTGCTGGTGCCGCCACGGCCGTCGAAACGACGAAGGTCGTCCGTCTT
GCCGGCGGCGCTGCTGCAGCCTCGTCAGGTCCGGTACCAGTGCGGACTGT
GCAGCCAGAGCTACGCGGCGACCGTGACCGGCAACCCGTGATGCTGCTGG
TGCCGCCACGGCCGTCGAAACGACGAAGGTCGTCCGTCTTGCCGGCGGCG
CTGCTGCAGCCTCGTCAGGTCCGGTACCAGTGCGGACTGTGCAGCCAGAG
CTACGCGGCGACCGTGACCGGCAACCCGTGGTGGTTACTGGTGAGGCAGG
AGTGCCCGGCGTGCCACAAGATGCAGATCCCTCGCGTCGACATCTTGAAT
CCCACCAACAACGTGGAGCGCCACATCGCCTTCCTCACGGAAGCGTGCGC
AGAGGTGGTTACTGGTGAGGCAGGAGTGCCCGGCGTGCCACAAGATGCAG
ATCCCTCGCGTCGACATCTTGAATCCCACCAACAACGTGGAGCGCCACAT
CGCCTTCCTCACGGAAGCGTGCGCAGAGACTGGGTCTGACGGCGACGTGA
GCTTCATGGACTGGGACGGGGACACGAGTGACGACAACTCAGGGGACGAG
TCGGGGGACGAGACTGGGTCTGACGGCGACGTGAGCTTCATGGACTGGGA
CGGGGACACGAGTGACGACAACTCAGGGGACGAGTCGGGGGACGAGCGAG
ACGCACAAGGGTCCTCGGCAGGAGGAGGAGGAGGAGGAGGAACCGTTAAC
GGCGGCGACGGCGGGAGTGGGCGAGACGCACAAGGGTCCTCGGCAGGAGG
AGGAGGAGGAGGAGGAACCGTTAACGGCGGCGACGGCGGGAGTGGG
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