mRNA_C-linearis_contig11.1352.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: D7FM60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM60_ECTSI) HSP 1 Score: 135 bits (339), Expect = 8.290e-39 Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 1
Query: 199 MMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFRG 432
MMRLFLASKGNKAEQ+NPL MSLGLAVP+ILLYAF LALQTYVLRLDVI+AVIGLVFVG EGLLSVGTAVSFYHAFRG
Sbjct: 1 MMRLFLASKGNKAEQINPLAMSLGLAVPVILLYAFSLALQTYVLRLDVIMAVIGLVFVGLEGLLSVGTAVSFYHAFRG 78
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: A0A7R9YFX6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFX6_9STRA) HSP 1 Score: 130 bits (327), Expect = 3.960e-36 Identity = 67/140 (47.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 13 DDHRAILSSLPLEVLLYFNQWFSSCFFALAICTYAYKAYRYYYPSGALELEISLTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFRG 432
D ++ LSSLPL+VL+YFN WFS+ FF LA+ + YK Y ++Y + ++++ F V+ RLFLASKGNK E L+ + L PI + YA+ L LQTYVLRLDV++ +GL FVG EGL+ + T V F A+RG
Sbjct: 5 DYYKRSLSSLPLQVLVYFNGWFSTLFFLLALALFLYKRYSFFYAGNSFAWDLTMLFFLSVVDFARLFLASKGNKTEHAGALLWFICLTAPICVGYAYLLTLQTYVLRLDVVLCSLGLAFVGLEGLIGIFTCVQFMRAYRG 144
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: A0A6U4EE63_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EE63_9STRA) HSP 1 Score: 130 bits (326), Expect = 6.330e-36 Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = 1
Query: 19 HRAILSSLPLEVLLYFNQWFSSCFFALAICTYAYKAYRYYYPSGALELEISLTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFRG 432
+R LSSLPL++L+YFN WFS+ FF L I + YK Y YY ++++ FL ++ +RLFL SKGNK E L+ + L VPI + YA+ L LQTYVLR+DV++ +GL+FVGFE L+S+ T V F A+RG
Sbjct: 11 YRRSLSSLPLQILVYFNGWFSTMFFLLGIALFLYKRYNLYYAGNGFGWDLAMLFLMTVLDALRLFLGSKGNKTEHAGALMWFIFLTVPICVGYAYLLTLQTYVLRIDVVLCSLGLIFVGFECLISIFTCVQFLRAYRG 148
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: A0A7S1CJJ7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJJ7_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.720e-29 Identity = 62/140 (44.29%), Postives = 91/140 (65.00%), Query Frame = 1
Query: 13 DDHRAILSSLPLEVLLYFNQWFSSCFFALAICTYAYKAYRYYYPSGALELEISLTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFRG 432
D + I SSLPL+V L+FN+ ++ FF + YK ++ +PS A E+++ F Y VE+ RL+LAS GNK EQ++P+V ++ AVP++ F L QTYVLR+D I+ V+ LVFVGFE S+ T ++FY + RG
Sbjct: 3 DAYNDIKSSLPLQVALHFNRPYAYMFFLIGFVEAVYKGIKFPFPSSAYGAEMAMLFAYIFVELSRLWLASMGNKTEQISPIVWAVAFAVPVVAYNIFNLTSQTYVLRIDQILNVVSLVFVGFEVFFSLITMLTFYRSGRG 142
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: A0A1V9ZL49_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZL49_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.720e-28 Identity = 61/135 (45.19%), Postives = 89/135 (65.93%), Query Frame = 1
Query: 28 ILSSLPLEVLLYFNQWFSSCFFALAICTYAYKA-YRYYYPSGALELEISLTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFR 429
+LSSLPLEVLL+FN+WFS + A++ + YKA Y Y P+GA E+ LY ++ +R+F ASKGNK EQ+ PL+ + L +P ++ ++ ++LQTYVLR+DV++ IGLVFVG E + T + A R
Sbjct: 5 LLSSLPLEVLLFFNRWFSHVYIAISAVVFVYKAMYLPYPPTGAFTWEVLFLGLYYLIDQVRIFQASKGNKTEQVFPLLTACLLTLPCVVSLSYYISLQTYVLRVDVVLNAIGLVFVGLESIFGPITTLRLLRASR 139
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: UPI00112AF3F6 (transmembrane protein 216 isoform X1 n=3 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112AF3F6) HSP 1 Score: 109 bits (272), Expect = 1.450e-27 Identity = 61/136 (44.85%), Postives = 85/136 (62.50%), Query Frame = 1
Query: 22 RAILSSLPLEVLLYFNQWFSSCFFALAICTYAYKAYRYYYPSGALELEISLTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFR 429
R ILSS PLE+LL+ N W+ + +F L I + YK YP+ L L++ + FLY +E++R+F SKGN ++ PL +SLGL VP ++ + L LQTYVLRL+ IV VI L+F E LLS+ +SF R
Sbjct: 11 RGILSSTPLEILLFLNGWYYATYFVLEILIFVYKGLILPYPTANLTLDLVMLFLYLGIEVIRIFYGSKGNLLQRKMPLTISLGLTVPAAMMAVYYLLLQTYVLRLEAIVNVILLIFYALELLLSIVALISFSRKIR 146
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: A0A6P7Y2F1_9AMPH (transmembrane protein 216 isoform X1 n=3 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7Y2F1_9AMPH) HSP 1 Score: 107 bits (268), Expect = 5.670e-27 Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 1
Query: 22 RAILSSLPLEVLLYFNQWFSSCFFALAICTYAYKAYRYYYPSGALELEISLTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSF 414
RA+LSS PLE+LL+ N W+ + +F L I + YK YP+ L L+I + FLY +E++R+F SKGN ++ PL +SLGL +P ++ + L LQTYVLRL+ IV +I LVF E LLS+ +SF
Sbjct: 27 RAVLSSTPLEILLFLNGWYYATYFLLEILIFVYKGLILPYPTANLTLDIVMLFLYLGIEVIRIFYGSKGNLLQRKMPLTISLGLMIPAAVMAVYYLLLQTYVLRLEAIVNIILLVFYALELLLSIVALMSF 157
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: A0A8J5X7D2_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X7D2_DIALT) HSP 1 Score: 104 bits (259), Expect = 7.450e-26 Identity = 56/137 (40.88%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 19 HRAILSSLPLEVLLYFNQWFSSCFFALAICTYAYKAYRYYYPSGALELEISLTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFR 429
H+ +LSSLPL+VLL+FN W+ + +A+ Y YK R YP+ L LEI + +E RL LAS+GNK E + P+ +LGL++P+ Y + L Q +VLRLD ++ +I +V + E LL TA+ F+ + R
Sbjct: 4 HQPMLSSLPLQVLLFFNGWYDLVYVVVALIEYIYKGSRLPYPASVLGLEIFGILMVALIEPCRLLLASRGNKTESIGPIAWNLGLSLPLFGAYTYYLRFQAFVLRLDQVLNIIAIVILAVEWLLGAITALVFWQSRR 140
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: A0A836CJL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL2_9STRA) HSP 1 Score: 102 bits (254), Expect = 8.710e-26 Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 1
Query: 172 LTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFRG 432
+ F+Y ++ R+F+ASKGNK E L PL S LA P+ LLYA+ LALQTYVL+LDV++A IGLVFVG E LLS TAV+FY+AFRG
Sbjct: 1 MVFVYAVLQATRVFMASKGNKTETLEPLAASALLAAPVALLYAYALALQTYVLQLDVVLAAIGLVFVGLETLLSATTAVAFYNAFRG 87
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Match: A0A7S3RB10_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3RB10_DUNTE) HSP 1 Score: 105 bits (262), Expect = 1.150e-25 Identity = 57/136 (41.91%), Postives = 90/136 (66.18%), Query Frame = 1
Query: 22 RAILSSLPLEVLLYFNQWFSSCFFALAICTYAYKAYRYYYPSGALELEISLTFLYGAVEMMRLFLASKGNKAEQLNPLVMSLGLAVPIILLYAFGLALQTYVLRLDVIVAVIGLVFVGFEGLLSVGTAVSFYHAFR 429
R +L+SL L++L++F+ W++ ++ L I + YK YP ++E S +LY +E+ RLFL +KGNKAEQ+ P+V SL LA+P++ +YA+ + QTYVL++D+I+ I L F+G + LLS+ A F A R
Sbjct: 62 RRVLTSLTLQILIFFSIWWNCFYYVLNILVFVYKGLVLPYPQQNFDMEFSFAWLYIILEIPRLFLVTKGNKAEQVVPIVFSLILALPLLAMYAYFIDFQTYVLKIDLILNGIALGFIGLQVLLSIFAAYRFATATR 197 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1352.1 >prot_C-linearis_contig11.1352.1 ID=prot_C-linearis_contig11.1352.1|Name=mRNA_C-linearis_contig11.1352.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=145bp MSRPDDHRAILSSLPLEVLLYFNQWFSSCFFALAICTYAYKAYRYYYPSGback to top mRNA from alignment at C-linearis_contig11:3034083..3036315- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1352.1 ID=mRNA_C-linearis_contig11.1352.1|Name=mRNA_C-linearis_contig11.1352.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2233bp|location=Sequence derived from alignment at C-linearis_contig11:3034083..3036315- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:3034083..3036315- >mRNA_C-linearis_contig11.1352.1 ID=mRNA_C-linearis_contig11.1352.1|Name=mRNA_C-linearis_contig11.1352.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at C-linearis_contig11:3034083..3036315- (Chordaria linearis ClinC8C monoicous)back to top |