mRNA_C-linearis_contig11.1339.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: A0A6H5L9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9M4_9PHAE) HSP 1 Score: 219 bits (558), Expect = 3.610e-63 Identity = 114/170 (67.06%), Postives = 131/170 (77.06%), Query Frame = 2
Query: 407 QTA*IKAVVGAGMGCLMCYGSKVGWYHRVFLPVIVLELSGGQG-SIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHLVRPGTKADVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPLPLAVAACPRPGWLLAAASAALV 913
QT I+A+VGA MGCLMCYGSK+GWYHRVFLPVIVLEL+ G+G SIWGA+DLCALCMVA GLC AHL+RP + D+ LARRGL F+LCFGDF+EAA YPF+ERCRCCN GA+ GSA+SGA VA STAYLPLP+AVAAC +P WLL A SAA +
Sbjct: 302 QTTWIQALVGAAMGCLMCYGSKIGWYHRVFLPVIVLELARGEGGSIWGAIDLCALCMVAA----------GLCVAHLLRPTSPVDLTLARRGLIFNLCFGDFIEAA-YPFMERCRCCNAGAYLGSAVSGAFVAVGGVA---STAYLPLPVAVAACSKPWWLLGATSAAFL 457
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: A0A7S3PUF6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUF6_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.820e-23 Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = 2
Query: 419 IKAVVGAGMGCLMCYGSKVGWYHRVFLPVIVLELSGGQGSIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHLVRPGTKADVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPLPLAV 859
+ A G +GC+ CYG+KVGWYH +FLP I+LE+ G+ S WG++D C L +V+ G+CAA+ + G L +R L +L GDF+E A YP++ + + N+ + S +S A++ S+AYLP+PL++
Sbjct: 14 LSAAYGFLVGCIFCYGAKVGWYHSIFLPGILLEMESGEMSTWGSVDECTLVLVSA----------GICAANTLTSGDA----LPKRALRINLTCGDFIEVA-YPYMSKSKTVNIAGYLASGVSTAILYSKQPSNVMSSAYLPMPLSL 145
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: A0A7S1USB9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USB9_9STRA) HSP 1 Score: 109 bits (272), Expect = 3.010e-22 Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 2
Query: 431 VGAGMGCLMCYGSKVGWYHRVFLPVIVLELSGGQGSIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHL-VRP---------GTKADVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPLPLAV 859
VG MGC CYGSKVG+YH ++LP+I++E+ G S+WG +D C L +V+ G+CA +L V P G + DV L RRGL +L +GDF+EAA YPF+ER N+ + S +S ++ S AYLPLP+++
Sbjct: 378 VGFAMGCFSCYGSKVGYYHALWLPIILIEMEFGSASLWGTIDECTLVLVSA----------GICAGNLAVNPRTPSDDHGQGVETDVALCRRGLRINLLYGDFIEAA-YPFMERSVVVNVAGYLASGISTELLTGNPTDVL-SMAYLPLPVSI 518
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: A0A448YX11_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YX11_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.690e-21 Identity = 63/147 (42.86%), Postives = 85/147 (57.82%), Query Frame = 2
Query: 419 IKAVVGAGMGCLMCYGSKVGWYHRVFLPVIVLELSGGQGSIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHLVRPGTKADVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPLPLAV 859
++ V + +GCL CYGSKVGWYH +FLP+I++E+ G S+ GA+D+ AL +V G+C LV G D LARRG+ +L +GDFVEA YP E+ N +A SALS A++ S+AYLP P AV
Sbjct: 420 LRLVFSSLLGCLFCYGSKVGWYHSIFLPLILIEMELGDPSMLGALDVLALVLVCA----------GVCLGLLVT-GNGEDKGLARRGMTTNLLYGDFVEAY-YPHAEKYPLVNAAGYAASALSSAILTTDCR----SSAYLPFPAAV 550
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: A0A7S4IXA2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IXA2_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.520e-20 Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = 2
Query: 431 VGAGMGCLMCYGSKVGWYHRVFLPVIVLELSGGQGSIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHLV-----------RPGTK---ADVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPLPLAV 859
+G GC CYGSKVGWYH FLP+I++E+ G+GSIWGA+D C L +V+ G+C A++V P + +D ++ RGL +L GDF+EAA YPF+ER N A+ S +S ++ +AYLP+ L++
Sbjct: 59 LGFAFGCFFCYGSKVGWYHSFFLPIILVEMECGEGSIWGAVDECTLVLVSA----------GICTANIVYSWLFRKKSESMPPQRLHNSDHDVSLRGLKINLLCGDFIEAA-YPFMERSVIVNAFAYLASGVSTEILFRERADNVLGSAYLPVMLSL 204
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: D7FXW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW3_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 4.420e-20 Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 2
Query: 443 MGCLMCYGSKVGWYHRVFLPVIVLELSGGQG-SIWGAMDLCALCMVA 580
MGCLMCYGSK+GWYHRVFLPVIVLEL+ G+G SIWGA+DLCALCMVA
Sbjct: 1 MGCLMCYGSKIGWYHRVFLPVIVLELARGEGGSIWGAIDLCALCMVA 47
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: B7GAH2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAH2_PHATC) HSP 1 Score: 100 bits (250), Expect = 2.100e-19 Identity = 60/174 (34.48%), Postives = 89/174 (51.15%), Query Frame = 2
Query: 419 IKAVVGAGMGCLMCYGSKVGWYHRVFLPVIVLELSGGQGSIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHLVRPG--------TKADVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPLPLAVAACPRPGWLLAAASAALVY 916
++ G +GC CYGSKVGWYH V LP+I++E+ G S+ GA+D L +V+ G+CAA+++ + AD+ L RRG ++ GDFVEA YP +E N+ + S LS A + S AYLPLP+A+ W+ A +A + +
Sbjct: 374 VRIGAGCALGCFCCYGSKVGWYHSVILPLILIEMELGDASVLGAVDELTLVLVSA----------GICAANVLYSTLHSRQDHLSTADIDLCRRGFFLNIACGDFVEAC-YPLMENRLAVNVSGYLASGLSTAWLVASSSQTPKSLAYLPLPIAIGVS-ETNWVQMAVAACIAF 535
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: A0A1E7EUU6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUU6_9STRA) HSP 1 Score: 100 bits (248), Expect = 3.730e-19 Identity = 56/163 (34.36%), Postives = 91/163 (55.83%), Query Frame = 2
Query: 392 SHLWPQTA*-------IKAVVGAGMGCLMCYGSKVGWYHRVFLPVIVLELSGGQGSIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHLVRPGTKADVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPLPLAV 859
++LW T I+ + + +GCL CYGSK+GWYH +FLP+I++E+ G S+ GA+D L +V+ G+C ++ G+ + LARRG+A +L GDF+E YP +E+ N+ + S++S AV+ S+AY+P P+A+
Sbjct: 365 TYLWESTGSSSVVHGYIRLLASSFLGCLFCYGSKIGWYHSIFLPIILVEMEIGDASMLGALDFLTLVLVSA----------GICLG-IILTGSTEERSLARRGIATNLLCGDFIEVC-YPHMEQHYLVNISGYVASSVSVAVLTGGCR----SSAYMPFPVAI 511
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: A0A7S1BV93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BV93_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.950e-19 Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 2
Query: 431 VGAGMGCLMCYGSKVGWYHRVFLPVIVLELSGGQGSIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHLV-RPGTKA-----DVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPL 847
+G GC YGSKVGWYH +FLP+I++E+ G+GS WGA+D C L +++ G+CAA+++ P K DV +++R L ++ GDF+EAA YPF+ER NL A+ ++ ++ S+AYLP+
Sbjct: 153 LGFLFGCTYIYGSKVGWYHMIFLPIILIEMEHGEGSTWGAIDECVLVLISA----------GICAANIMCHPRVKGVIKKGDVAISKRALKTNIFCGDFIEAA-YPFMERSVTINLCAYLAGGIATEIIYQSPHQVL-SSAYLPV 285
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Match: B8LCQ5_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCQ5_THAPS) HSP 1 Score: 97.4 bits (241), Expect = 5.390e-18 Identity = 62/164 (37.80%), Postives = 86/164 (52.44%), Query Frame = 2
Query: 404 PQTA*IKAVVGAGM--GCLMCYGSKVGWYHRVFLPVIVLELSG----GQGSIWGAMDLCALCMVAVAMVVPEKNKTGLCAAHLV------RPGTKADVPLARRGLAFSLCFGDFVEAAAYPFVERCRCCNLGAHAGSALSGAVVAXXXXXXXPSTAYLPLPLAV 859
P + +G G GC+ YGSKVGWYH +FLP+I+LE+ G S+ GAMD C L M+ G+CA++L + G + LA + L ++C GDF+EAA YPF+ER + N A+ L+ ++ STAY PLPLAV
Sbjct: 1414 PSFNALPIPIGTGFLYGCIFVYGSKVGWYHSLFLPLILLEMDSSKELGAASLLGAMDECTLVMICA----------GICASNLTFAPGKRKTGGGGERSLAWQALKTNICCGDFIEAA-YPFMERSQLVNASAYIAGGLASELLMQRRVL---STAYFPLPLAV 1563 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1339.1 >prot_C-linearis_contig11.1339.1 ID=prot_C-linearis_contig11.1339.1|Name=mRNA_C-linearis_contig11.1339.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=159bp MGCLMCYGSKVGWYHRVFLPVIVLELSGGQGSIWGAMDLCALCMVAVAMVback to top mRNA from alignment at C-linearis_contig11:2887201..2889387+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1339.1 ID=mRNA_C-linearis_contig11.1339.1|Name=mRNA_C-linearis_contig11.1339.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2187bp|location=Sequence derived from alignment at C-linearis_contig11:2887201..2889387+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:2887201..2889387+ >mRNA_C-linearis_contig11.1339.1 ID=mRNA_C-linearis_contig11.1339.1|Name=mRNA_C-linearis_contig11.1339.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at C-linearis_contig11:2887201..2889387+ (Chordaria linearis ClinC8C monoicous)back to top |