mRNA_C-linearis_contig11.1303.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1303.1
Unique NamemRNA_C-linearis_contig11.1303.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 3.400e-48
Identity = 94/145 (64.83%), Postives = 109/145 (75.17%), Query Frame = 1
Query:   22 KTPVPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGRLSSPGALAEST-SARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHA 453
             TPVP+GWF  YIIIAAAWSPW GNCP QW  L ASDGKA   KKGD+IASG LSSPGALAEST SARKMEN+NG   SRRA +AA+ AE DRVRR+ +D EN A+ E   +LK+E + AM++ NENS +L  SM E+V  KR A
Sbjct:  398 STPVPDGWFHPYIIIAAAWSPWGGNCPTQWQNLSASDGKAPTNKKGDQIASGPLSSPGALAESTASARKMENNNGNSVSRRAHQAALNAETDRVRRDKRDNENMAQQEKATALKKEALQAMQKGNENSGKLVASMEEMVGLKRKA 542          
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5JVT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.410e-13
Identity = 62/165 (37.58%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  121 VASDGKAFVTKKGDKIASGR---LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEV-AKRARKITAVEQQVMFMSPRPDTFALEQALKQLLQEEIES 603
            +AS+G    + K D++A+G     SSP A+  ST+AR M N+NG   SRR  + AIK E  +VR+ ++DK ++ R +     +R+GV AM  +N+NS+ +      L   +        EG EV AKRARKI A+E++ M    +      E  L  LL++EIES
Sbjct:    1 MASEGATLKSSKEDQLATGSSNPCSSPAAM--STAARTMVNNNGQSVSRRETERAIKEEKAQVRQAARDKISEDRAKEAADARRQGVAAMVVSNQNSEEMVGQTKRLATIE--------EGKEVVAKRARKIAALEKRNMIAGGKNPAIVAE--LDALLRKEIES 153          
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5K6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 9.640e-12
Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQ-ARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
            VPE W F ++++ AA+SPWSG  P +W  L +SDG +   K GD        + SP  ++         N NG   SRR   AAIK E ++ R+++ DK  Q A  EA+E+ K++G+ A++ A+ + + +  +M  +V  K      E E   + KR  +I  +E++VM 
Sbjct:   31 VPEWWVFPFLLLTAAYSPWSGRAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMSRL-------NPNGDALSRRQHFAAIKREKEQERKKAADKRLQEAWKEALET-KKKGLAALEAASTHIETIGANMKRMVELK------EAEAVGI-KRKNRIKVLEKKVML 185          
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.000e-10
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQ-ARGEAMESLKREGVNAMKEANEN 399
            VPE W F ++++ AA+SPWSG  P +W  L +SDG +   K GD        + SP  ++         + NG   SRR   AAIK E ++ R+ + DKE Q +R E +E+ K++G+ A++ AN N
Sbjct:  118 VPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRL-------DPNGDALSRRQHFAAIKREKEQERKATADKELQESRKETLET-KKKGLAALEAANTN 235          
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.470e-9
Identity = 56/170 (32.94%), Postives = 86/170 (50.59%), Query Frame = 1
Query:   31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQ-ARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
            VPE W F ++++ AA+SPWSG  P +W  L +SDG +   K  D        + SP  ++         N NG   SRR   AAIK E ++  + + +KE Q AR E +E+ K  G+ A + AN + + +   M  +V  K      E E   + KR  KI A+E++++ 
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRL-------NPNGDALSRRQHFAAIKREKEQEMKAAAEKELQEARKEPLETKK--GLAAFEAANTHVETIGADMKRMVELK------EAEAVGI-KRENKIKALEKKIVL 290          
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.350e-9
Identity = 57/170 (33.53%), Postives = 83/170 (48.82%), Query Frame = 1
Query:   31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGE-AMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
            VPE W F ++++ AA+SPWSG  P +W  L +SDG +     GD        + SP  ++         N NG   SRR   AAIK E +  R+ + DKE Q     A+E+ K  G  A++ AN +   +  +M  +V  K      E E   + KR  KI A+E+ +M 
Sbjct:  121 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRL-------NPNGDALSRRQHFAAIKREKEEERKAAADKELQXXXXXALETKK--GPAALEAANTHVDSIGANMKRMVELK------EAEAVGI-KRENKIKALEKIIML 274          
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.170e-6
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
            VPE W F ++++ AA+SPWSG  P +W  L +SDG +   K GD        + SP  ++         N NG          A+   + R ++       + R EA+++ K++G+ A++ AN + + +  +M  +V  K      E E   + KR  KI A+E+++M 
Sbjct:  400 VPEWWVFPFLLLTAAYSPWSGRAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMSRL-------NPNG---------DALSRSSRRGKQRPTRNFQETRKEALKT-KKKGLAALEAANTHIETIGANMKRMVELK------EAEAVGI-KRENKIKALEKKIML 544          
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.060e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1
Query:   31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGD 162
            VPE W F ++++ AA+SPWSG  P +W  L +SDG +   K GD
Sbjct:  118 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGD 161          
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.390e-5
Identity = 47/167 (28.14%), Postives = 73/167 (43.71%), Query Frame = 1
Query:   31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGRLSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
            VPE W F ++++ AA+SPWSG  P +W  L +SDG +   K GD                      EN    P  R   KAA   E    R+E+   E +          ++G+ A++ AN + + +  +M  +V  K+         A   KR  KI A+E+++M 
Sbjct:  106 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDS-----------------ENPVCSPAER---KAATDKELQEARKEAL--ETKKXXXXXXXXXKKGLAALEAANTHIETIGANMKRMVELKQAE-------AVGIKRENKIKALEKRIML 243          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KAW6_9PHAE3.400e-4864.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT1_9PHAE5.410e-1337.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6E0_9PHAE9.640e-1233.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF1_9PHAE8.000e-1037.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE1.470e-932.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE7.350e-933.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXM3_9PHAE2.170e-628.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE2.060e-547.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7S4_9PHAE4.390e-528.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2451629..2452267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1303.1prot_C-linearis_contig11.1303.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2451854..2452234 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.890569-UTR-C-linearis_contig11:2451628..24518531622927428.890569-UTR-C-linearis_contig11:2451628..2451853Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2451629..2451853 +
1690879694.69899-UTR-C-linearis_contig11:2451628..24518531690879694.69899-UTR-C-linearis_contig11:2451628..2451853Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2451629..2451853 +
1622927428.925018-UTR-C-linearis_contig11:2452234..24522671622927428.925018-UTR-C-linearis_contig11:2452234..2452267Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2452235..2452267 +
1690879694.717721-UTR-C-linearis_contig11:2452234..24522671690879694.717721-UTR-C-linearis_contig11:2452234..2452267Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2452235..2452267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.9096594-CDS-C-linearis_contig11:2451853..24522341622927428.9096594-CDS-C-linearis_contig11:2451853..2452234Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2451854..2452234 +
1690879694.7076929-CDS-C-linearis_contig11:2451853..24522341690879694.7076929-CDS-C-linearis_contig11:2451853..2452234Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2451854..2452234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1303.1

>prot_C-linearis_contig11.1303.1 ID=prot_C-linearis_contig11.1303.1|Name=mRNA_C-linearis_contig11.1303.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=127bp
MENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVN
AMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQV
MFMSPRPDTFALEQALKQLLQEEIES*
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mRNA from alignment at C-linearis_contig11:2451629..2452267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1303.1 ID=mRNA_C-linearis_contig11.1303.1|Name=mRNA_C-linearis_contig11.1303.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=639bp|location=Sequence derived from alignment at C-linearis_contig11:2451629..2452267+ (Chordaria linearis ClinC8C monoicous)
CGTGGCGCAGAGGGTGCGGGGAAAACACCGGTGCCTGAGGGGTGGTTTTT CACGTACATCATCATAGCTGCTGCGTGGTCTCCCTGGAGCGGGAACTGCC CCCTACAGTGGAACACCCTGGTTGCATCTGACGGCAAAGCTTTTGTGACC AAGAAGGGCGACAAGATCGCATCCGGTCGTCTTTCAAGCCCGGGAGCATT GGCTGAATCGACTTCGGCACGTAAGATGGAAAACGACAACGGCATGCCCA CAAGTCGTCGTGCGGCCAAAGCAGCGATTAAGGCGGAGGCTGACCGGGTT CGCAGAGAGAGCAAGGACAAGGAAAACCAGGCACGTGGCGAGGCCATGGA GAGCCTTAAGAGGGAGGGAGTGAACGCAATGAAGGAGGCGAACGAGAACT CGAAGAGACTGGCGGTGTCAATGGGGGAGTTGGTGGCTTTCAAGAGGCAT GCGGACGAGCGGGAGAAGGAGGGTGCGGAGGTGGCGAAGAGAGCCCGAAA GATCACAGCCGTGGAGCAACAGGTGATGTTCATGTCGCCAAGGCCAGACA CGTTCGCTCTCGAACAGGCGCTGAAGCAGCTGCTACAAGAAGAGATCGAG TCGTGAGAAGGGACCCGTTCTTTTTTGGGTGGGGGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig11:2451629..2452267+

>mRNA_C-linearis_contig11.1303.1 ID=mRNA_C-linearis_contig11.1303.1|Name=mRNA_C-linearis_contig11.1303.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at C-linearis_contig11:2451629..2452267+ (Chordaria linearis ClinC8C monoicous)
ATGGAAAACGACAACGGCATGCCCACAAGTCGTCGTGCGGCCAAAGCAGC
GATTAAGGCGGAGGCTGACCGGGTTCGCAGAGAGAGCAAGGACAAGGAAA
ACCAGGCACGTGGCGAGGCCATGGAGAGCCTTAAGAGGGAGGGAGTGAAC
GCAATGAAGGAGGCGAACGAGAACTCGAAGAGACTGGCGGTGTCAATGGG
GGAGTTGGTGGCTTTCAAGAGGCATGCGGACGAGCGGGAGAAGGAGGGTG
CGGAGGTGGCGAAGAGAGCCCGAAAGATCACAGCCGTGGAGCAACAGGTG
ATGTTCATGTCGCCAAGGCCAGACACGTTCGCTCTCGAACAGGCGCTGAA
GCAGCTGCTACAAGAAGAGATCGAGTCGTGAATGGAAAACGACAACGGCA
TGCCCACAAGTCGTCGTGCGGCCAAAGCAGCGATTAAGGCGGAGGCTGAC
CGGGTTCGCAGAGAGAGCAAGGACAAGGAAAACCAGGCACGTGGCGAGGC
CATGGAGAGCCTTAAGAGGGAGGGAGTGAACGCAATGAAGGAGGCGAACG
AGAACTCGAAGAGACTGGCGGTGTCAATGGGGGAGTTGGTGGCTTTCAAG
AGGCATGCGGACGAGCGGGAGAAGGAGGGTGCGGAGGTGGCGAAGAGAGC
CCGAAAGATCACAGCCGTGGAGCAACAGGTGATGTTCATGTCGCCAAGGC
CAGACACGTTCGCTCTCGAACAGGCGCTGAAGCAGCTGCTACAAGAAGAG
ATCGAGTCGTGA
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