mRNA_C-linearis_contig11.1303.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE) HSP 1 Score: 176 bits (446), Expect = 3.400e-48 Identity = 94/145 (64.83%), Postives = 109/145 (75.17%), Query Frame = 1
Query: 22 KTPVPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGRLSSPGALAEST-SARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHA 453
TPVP+GWF YIIIAAAWSPW GNCP QW L ASDGKA KKGD+IASG LSSPGALAEST SARKMEN+NG SRRA +AA+ AE DRVRR+ +D EN A+ E +LK+E + AM++ NENS +L SM E+V KR A
Sbjct: 398 STPVPDGWFHPYIIIAAAWSPWGGNCPTQWQNLSASDGKAPTNKKGDQIASGPLSSPGALAESTASARKMENNNGNSVSRRAHQAALNAETDRVRRDKRDNENMAQQEKATALKKEALQAMQKGNENSGKLVASMEEMVGLKRKA 542
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5JVT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT1_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 5.410e-13 Identity = 62/165 (37.58%), Postives = 92/165 (55.76%), Query Frame = 1
Query: 121 VASDGKAFVTKKGDKIASGR---LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEV-AKRARKITAVEQQVMFMSPRPDTFALEQALKQLLQEEIES 603
+AS+G + K D++A+G SSP A+ ST+AR M N+NG SRR + AIK E +VR+ ++DK ++ R + +R+GV AM +N+NS+ + L + EG EV AKRARKI A+E++ M + E L LL++EIES
Sbjct: 1 MASEGATLKSSKEDQLATGSSNPCSSPAAM--STAARTMVNNNGQSVSRRETERAIKEEKAQVRQAARDKISEDRAKEAADARRQGVAAMVVSNQNSEEMVGQTKRLATIE--------EGKEVVAKRARKIAALEKRNMIAGGKNPAIVAE--LDALLRKEIES 153
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5K6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E0_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 9.640e-12 Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQ-ARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
VPE W F ++++ AA+SPWSG P +W L +SDG + K GD + SP ++ N NG SRR AAIK E ++ R+++ DK Q A EA+E+ K++G+ A++ A+ + + + +M +V K E E + KR +I +E++VM
Sbjct: 31 VPEWWVFPFLLLTAAYSPWSGRAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMSRL-------NPNGDALSRRQHFAAIKREKEQERKKAADKRLQEAWKEALET-KKKGLAALEAASTHIETIGANMKRMVELK------EAEAVGI-KRKNRIKVLEKKVML 185
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 8.000e-10 Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1
Query: 31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQ-ARGEAMESLKREGVNAMKEANEN 399
VPE W F ++++ AA+SPWSG P +W L +SDG + K GD + SP ++ + NG SRR AAIK E ++ R+ + DKE Q +R E +E+ K++G+ A++ AN N
Sbjct: 118 VPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRL-------DPNGDALSRRQHFAAIKREKEQERKATADKELQESRKETLET-KKKGLAALEAANTN 235
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 1.470e-9 Identity = 56/170 (32.94%), Postives = 86/170 (50.59%), Query Frame = 1
Query: 31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQ-ARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
VPE W F ++++ AA+SPWSG P +W L +SDG + K D + SP ++ N NG SRR AAIK E ++ + + +KE Q AR E +E+ K G+ A + AN + + + M +V K E E + KR KI A+E++++
Sbjct: 137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRL-------NPNGDALSRRQHFAAIKREKEQEMKAAAEKELQEARKEPLETKK--GLAAFEAANTHVETIGADMKRMVELK------EAEAVGI-KRENKIKALEKKIVL 290
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 7.350e-9 Identity = 57/170 (33.53%), Postives = 83/170 (48.82%), Query Frame = 1
Query: 31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGE-AMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
VPE W F ++++ AA+SPWSG P +W L +SDG + GD + SP ++ N NG SRR AAIK E + R+ + DKE Q A+E+ K G A++ AN + + +M +V K E E + KR KI A+E+ +M
Sbjct: 121 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRL-------NPNGDALSRRQHFAAIKREKEEERKAAADKELQXXXXXALETKK--GPAALEAANTHVDSIGANMKRMVELK------EAEAVGI-KRENKIKALEKIIML 274
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 2.170e-6 Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 1
Query: 31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGR--LSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
VPE W F ++++ AA+SPWSG P +W L +SDG + K GD + SP ++ N NG A+ + R ++ + R EA+++ K++G+ A++ AN + + + +M +V K E E + KR KI A+E+++M
Sbjct: 400 VPEWWVFPFLLLTAAYSPWSGRAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMSRL-------NPNG---------DALSRSSRRGKQRPTRNFQETRKEALKT-KKKGLAALEAANTHIETIGANMKRMVELK------EAEAVGI-KRENKIKALEKKIML 544
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 2.060e-5 Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1
Query: 31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGD 162
VPE W F ++++ AA+SPWSG P +W L +SDG + K GD
Sbjct: 118 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGD 161
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 4.390e-5 Identity = 47/167 (28.14%), Postives = 73/167 (43.71%), Query Frame = 1
Query: 31 VPEGWFFTYIIIAAAWSPWSGNCPLQWNTLVASDGKAFVTKKGDKIASGRLSSPGALAESTSARKMENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQVMF 531
VPE W F ++++ AA+SPWSG P +W L +SDG + K GD EN P R KAA E R+E+ E + ++G+ A++ AN + + + +M +V K+ A KR KI A+E+++M
Sbjct: 106 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDS-----------------ENPVCSPAER---KAATDKELQEARKEAL--ETKKXXXXXXXXXKKGLAALEAANTHIETIGANMKRMVELKQAE-------AVGIKRENKIKALEKRIML 243 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1303.1 >prot_C-linearis_contig11.1303.1 ID=prot_C-linearis_contig11.1303.1|Name=mRNA_C-linearis_contig11.1303.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=127bp MENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNback to top mRNA from alignment at C-linearis_contig11:2451629..2452267+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1303.1 ID=mRNA_C-linearis_contig11.1303.1|Name=mRNA_C-linearis_contig11.1303.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=639bp|location=Sequence derived from alignment at C-linearis_contig11:2451629..2452267+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:2451629..2452267+ >mRNA_C-linearis_contig11.1303.1 ID=mRNA_C-linearis_contig11.1303.1|Name=mRNA_C-linearis_contig11.1303.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at C-linearis_contig11:2451629..2452267+ (Chordaria linearis ClinC8C monoicous)back to top |