mRNA_C-linearis_contig11.1297.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1297.1
Unique NamemRNA_C-linearis_contig11.1297.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Match: A0A6H5LJ83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ83_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 6.530e-74
Identity = 131/169 (77.51%), Postives = 141/169 (83.43%), Query Frame = 2 
Query:  590 PAEGKIKPDWPVGTPAPGRVQTLGEAFAAMQHHARGTRKVKASVLNGILERVSSEEELKYATLGLEIFKTQGIDLPTKTGTLFVKACCKAGSPQTAVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKAGDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGE 1096
            P+  K K DW  GTP  GR QT+GEAFAAMQ+HARGTRKVKASVLN ILERV+S E+LKYA LGL+IFKTQGIDL  KT TLFVKACCKAGSPQ AVD LG A KYGLDGEGVVSAHRFNYLLSQLY AGD++ F RAV EA  RQQSLNARSHTLI++FEGE R K E
Sbjct:   69 PSGEKRKQDWAPGTPPAGRDQTIGEAFAAMQYHARGTRKVKASVLNRILERVTSAEDLKYACLGLKIFKTQGIDLEKKTATLFVKACCKAGSPQMAVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLISKFEGEMRAKEE 237
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BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Match: D7FS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS35_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 7.760e-25
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 2 
Query:  875 AVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKAGDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGE 1096
            AVD LG A KYGLDGEGVVSAHRFNYLLSQLY AGD++ F RAV EA  RQQSLNARSHTLIA+FEGE R K E
Sbjct:    2 AVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLIAKFEGEMRAKEE 75
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LJ83_9PHAE6.530e-7477.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS35_ECTSI7.760e-2579.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2379544..2382249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004500.1
Exons4
Model size1761
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1297.1prot_C-linearis_contig11.1297.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2379930..2381573 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927454.5474255-UTR-C-linearis_contig11:2379543..23799291622927454.5474255-UTR-C-linearis_contig11:2379543..2379929Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2379544..2379929 -
1690879710.2538898-UTR-C-linearis_contig11:2379543..23799291690879710.2538898-UTR-C-linearis_contig11:2379543..2379929Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2379544..2379929 -
1622927454.637435-UTR-C-linearis_contig11:2381573..23822491622927454.637435-UTR-C-linearis_contig11:2381573..2382249Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2381574..2382249 -
1690879710.3045924-UTR-C-linearis_contig11:2381573..23822491690879710.3045924-UTR-C-linearis_contig11:2381573..2382249Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2381574..2382249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927454.559348-CDS-C-linearis_contig11:2379929..23803151622927454.559348-CDS-C-linearis_contig11:2379929..2380315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2379930..2380315 -
1690879710.2695847-CDS-C-linearis_contig11:2379929..23803151690879710.2695847-CDS-C-linearis_contig11:2379929..2380315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2379930..2380315 -
1622927454.5710485-CDS-C-linearis_contig11:2380762..23809071622927454.5710485-CDS-C-linearis_contig11:2380762..2380907Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2380763..2380907 -
1690879710.2774525-CDS-C-linearis_contig11:2380762..23809071690879710.2774525-CDS-C-linearis_contig11:2380762..2380907Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2380763..2380907 -
1622927454.5820978-CDS-C-linearis_contig11:2381194..23813321622927454.5820978-CDS-C-linearis_contig11:2381194..2381332Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2381195..2381332 -
1690879710.2854514-CDS-C-linearis_contig11:2381194..23813321690879710.2854514-CDS-C-linearis_contig11:2381194..2381332Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2381195..2381332 -
1622927454.6273289-CDS-C-linearis_contig11:2381543..23815731622927454.6273289-CDS-C-linearis_contig11:2381543..2381573Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2381544..2381573 -
1690879710.2940068-CDS-C-linearis_contig11:2381543..23815731690879710.2940068-CDS-C-linearis_contig11:2381543..2381573Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2381544..2381573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1297.1

>prot_C-linearis_contig11.1297.1 ID=prot_C-linearis_contig11.1297.1|Name=mRNA_C-linearis_contig11.1297.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MQHHARGTRKVKASVLNGILERVSSEEELKYATLGLEIFKTQGIDLPTKT
GTLFVKACCKAGSPQTAVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKA
GDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGEEAARAKAEEE
RVAREAEEKAKRGEEEAELKAKEAAEEEARLKEEQENKPKEEEAVAEVTR
DTGAPPPEGDAEQGASENAEAAADAQDVEAKR*
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mRNA from alignment at C-linearis_contig11:2379544..2382249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1297.1 ID=mRNA_C-linearis_contig11.1297.1|Name=mRNA_C-linearis_contig11.1297.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2706bp|location=Sequence derived from alignment at C-linearis_contig11:2379544..2382249- (Chordaria linearis ClinC8C monoicous)
GGGCCTATCCGTAACATTTTTCACGTAGAGGATCGTGTGTACTGCTGTAT
GCTGACCAAACAGAGATCTACAAAATGCTTTCAGTGAGACTCTCTCGTAA
CGAGGGCACCTGGGCCAATTGGCATGCCAGCTGAGCAGTGAACTCCCGTC
TTGCAAAGGCAGAGGAGTTACGTGGCTGGCGTGCACACGCGCACAAAGGT
CGCTTCGCGAACTACCGTGTACTTTTTCAAGAGCATGACCAGCTACCGGT
GATGCGCTGAATATCCCCGAGGCAAGACGTCTATGTATCATACAGTACAA
CAAATGTGTAAATGTACACTAATGCGCTATTTCGTGCGTTCCTACTATGA
CAACGTGCCTATAACATGTCATGTTCCCTCCAGGTACACAAAAAGTCAAC
CACTAGGATTGATGATGTCGGAGGCCCACCCACTCGTCCTTTGCTTCCCG
TCGTTTCCTTCTCCTCTTCCTTCTGCATCTCGAACCCGACGCAACATCAA
ATCCCATCCGCACAGTCGTCAACGCCGTCAAGCAGCGCCCCCACGAGTGG
ACACCCACAAGAGGGCTTAGCGATGCGTCGTCGGGAGCACCTGCAGAGGG
GAAAATAAAGCCGGACTGGCCTGTGGGCACGCCTGCTCCGGGAAGAGTCC
AGACCCTCGGAGAGGCCTTTGCTGCTATGCAACACCACGCTAGGGGCACG
CGAAAGGTACCTAGACCGCTTTGACCGACGAGCCAATGAACGATAAGCAA
CTAGGAGGGTCACTCGTTGCGTTGCAAGCAGACCGTACTGTGTTCCAATA
CACCCTTGCACCCCGCAGAAGGAGACGGAACACGCCGTTTCTCCCTGCTT
TTCGACGAGTTTGTTAATGCCCGAAACGCACTCGGTTCCTACTTCTTTAC
TGGCCGTCGCGCGACAGGTCAAGGCCAGCGTTTTGAATGGCATCTTGGAG
CGAGTGAGTTCCGAAGAAGAGCTCAAGTACGCAACTCTAGGGCTTGAGAT
ATTCAAGACGCAGGGAATAGATCTCCCCACCAAGACGGGAACTCTCTTCG
TCAAGGTAAGCACAGAGCGATAAAAAAGTTGCGAAGCCGGTGGCCCTCTC
GCTTTGGCAGTCAAGCCAGTACTCATTATCTTAACATCGCTTCACTTTTT
CGTGTCGGTCGGATTTGCCAAATGCGTGTGATTGCATCAGCCTGCTTCCA
TTTACTCTAGACCCCGTTGACCCTCGTGGCACCGCTCCCGCACTGTAGCG
CCACGTTTCCCCCCCTCCTCATCCGCTCACTTGATTGTTATTCACCGGTT
GTTTTTCGCCTATTGTGTTGTCTTCTTGAATACTTTCGCAAGGCGTGCTG
TAAGGCGGGATCGCCCCAGACAGCAGTGGATGCTCTGGGGGGGGCAAGGA
AGTACGGCTTGGACGGAGAGGGCGTGGTGAGCGCGCACCGCTTTAATTAT
CTTTTGAGCCAGCTTTACAAGGCCGGAGACGCGGATGGTGAGTGGGTTGC
GGTGGGCCGATGTACGGATATGTTGTCCGCTTGCTTTGTGATGCCGAGCA
TGCTGAAGTTATTGAGGGGTTCGTTGTTGTCAGCACAAAACCACCACCAA
CCCCACACTCCACGCTCTCGCTAGAGTTTCTCCCCCGAAGACTGCTGTTG
AGCTTGTCTCCAAGCTAAGGTTCGAGTTATTTTTGCGCCAGCTCGATGCA
AGCCTCCCCCTCCCTAAAAGAGCACCCCCCACGCCTTTTGGTGGAGCAGA
AAGAGTGCTTCGTCTCTAAAGAGGGCGGCGTACGTACGTGGCCATTTTTT
CAGCGAATTAAGGGAAAAGCGGAGTATGAAAATGAGCTCGCCCCCGTCAA
AATCGCCGCCCTTCCGTCCTCCCCGCTCTGCTCTCACCACCACCCTCCCC
CCACTCTGCTGCGGCACGTTTTACTTATCGGCAGGCTTCAAACGCGCGGT
CGAGGAGGCCCGATCCCGGCAGCAGTCCCTGAACGCCCGCTCGCACACCC
TGATCGCCAGGTTCGAGGGAGAGGAGAGGATGAAGGGGGAGGAAGCGGCC
AGGGCCAAGGCCGAGGAGGAGAGGGTCGCGAGAGAAGCGGAAGAGAAGGC
CAAGAGGGGGGAGGAGGAAGCGGAGCTGAAGGCCAAGGAGGCCGCGGAAG
AAGAGGCTAGACTGAAGGAGGAACAGGAGAACAAGCCCAAGGAAGAGGAA
GCAGTGGCAGAGGTGACCAGGGACACCGGCGCTCCGCCCCCTGAGGGCGA
CGCCGAGCAGGGTGCGTCGGAGAATGCTGAGGCAGCAGCGGATGCGCAAG
ATGTGGAAGCCAAGCGATGAGCGGTTTCGTAACTTTTACTTTTGGTTGTT
GTGTCCAACTAAGTCATCAAGTCATCGCTCGTGCGGTAGGCTCTGTGTGG
CTAGCGGTGTTGAACCGAGTGGGGCAAACTTTTGAGGATGCGGAGCAAGG
CAAAAACTACGAGGGAGATACAATAAGTATAGCTGGGGTTTACTCGCAAG
CAGTCGACGGTTAGATCGACGGGGTTGGGGGAGGCACGCTGGAGGCTGGA
TGGGAAAGGGTCCGTTGTTGGGTCGTTCCTTGGTCGAAATTTCCGGTCTC
AGCAGGTTTCATCATGGAATCGGCGGACATACCGGCGGGATGGAAATATC
ACTGCCGTGTTTGATGTTTCTTGTGACCCACCACATATCCTTGCACTTTG
CGCAGC
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Coding sequence (CDS) from alignment at C-linearis_contig11:2379544..2382249-

>mRNA_C-linearis_contig11.1297.1 ID=mRNA_C-linearis_contig11.1297.1|Name=mRNA_C-linearis_contig11.1297.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig11:2379544..2382249- (Chordaria linearis ClinC8C monoicous)
ATGCAACACCACGCTAGGGGCACGCGAAAGATGCAACACCACGCTAGGGG
CACGCGAAAGGTCAAGGCCAGCGTTTTGAATGGCATCTTGGAGCGAGTGA
GTTCCGAAGAAGAGCTCAAGTACGCAACTCTAGGGCTTGAGATATTCAAG
ACGCAGGGAATAGATCTCCCCACCAAGACGGGAACTCTCTTCGTCAAGGT
CAAGGCCAGCGTTTTGAATGGCATCTTGGAGCGAGTGAGTTCCGAAGAAG
AGCTCAAGTACGCAACTCTAGGGCTTGAGATATTCAAGACGCAGGGAATA
GATCTCCCCACCAAGACGGGAACTCTCTTCGTCAAGGCGTGCTGTAAGGC
GGGATCGCCCCAGACAGCAGTGGATGCTCTGGGGGGGGCAAGGAAGTACG
GCTTGGACGGAGAGGGCGTGGTGAGCGCGCACCGCTTTAATTATCTTTTG
AGCCAGCTTTACAAGGCCGGAGACGCGGATGGCGTGCTGTAAGGCGGGAT
CGCCCCAGACAGCAGTGGATGCTCTGGGGGGGGCAAGGAAGTACGGCTTG
GACGGAGAGGGCGTGGTGAGCGCGCACCGCTTTAATTATCTTTTGAGCCA
GCTTTACAAGGCCGGAGACGCGGATGGCTTCAAACGCGCGGTCGAGGAGG
CCCGATCCCGGCAGCAGTCCCTGAACGCCCGCTCGCACACCCTGATCGCC
AGGTTCGAGGGAGAGGAGAGGATGAAGGGGGAGGAAGCGGCCAGGGCCAA
GGCCGAGGAGGAGAGGGTCGCGAGAGAAGCGGAAGAGAAGGCCAAGAGGG
GGGAGGAGGAAGCGGAGCTGAAGGCCAAGGAGGCCGCGGAAGAAGAGGCT
AGACTGAAGGAGGAACAGGAGAACAAGCCCAAGGAAGAGGAAGCAGTGGC
AGAGGTGACCAGGGACACCGGCGCTCCGCCCCCTGAGGGCGACGCCGAGC
AGGGTGCGTCGGAGAATGCTGAGGCAGCAGCGGATGCGCAAGATGTGGAA
GCCAAGCGATGAGCTTCAAACGCGCGGTCGAGGAGGCCCGATCCCGGCAG
CAGTCCCTGAACGCCCGCTCGCACACCCTGATCGCCAGGTTCGAGGGAGA
GGAGAGGATGAAGGGGGAGGAAGCGGCCAGGGCCAAGGCCGAGGAGGAGA
GGGTCGCGAGAGAAGCGGAAGAGAAGGCCAAGAGGGGGGAGGAGGAAGCG
GAGCTGAAGGCCAAGGAGGCCGCGGAAGAAGAGGCTAGACTGAAGGAGGA
ACAGGAGAACAAGCCCAAGGAAGAGGAAGCAGTGGCAGAGGTGACCAGGG
ACACCGGCGCTCCGCCCCCTGAGGGCGACGCCGAGCAGGGTGCGTCGGAG
AATGCTGAGGCAGCAGCGGATGCGCAAGATGTGGAAGCCAAGCGATGA
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