mRNA_C-linearis_contig11.1295.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1295.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 622 bits (1605), Expect = 1.220e-203 Identity = 476/1036 (45.95%), Postives = 548/1036 (52.90%), Query Frame = 2
Query: 80 ARQDFKIYMSKLLEHSTALDAFRSEERYVDVGAAGSGGPAWGPPLKGLSEGGGSVGGTKGSPAASAALHAPSTSLSPSYFREEQ-AWPRAGAVTPPRPRPPPNFSWVAEP--PTLRGGVHGGGGGATGRSL--FLDSAPSLAPPPEGGGGP------------FDQHATARG--RLEGEDGVGDEWKAQWSRRLLRGPIHSEYQARFPWPPRSA-LKTIS--AVYATSTPAHHRGRSAASAS------NTAEIRAESSAMMTSLVPQARSVSPLRRRGRGHGRADGGSSSGARK----------EEENRGPRGTSEPPGGRRTGVDYLTEMPRNELRPSSPLNVAVQHADTEYVNGNKAAPAGVSSVGEEQRVRKDEAPRVKDALV----------ESTPPSEEMGSGTR--CSVSDGREWAGGRDQVGGYTDLALKAVAAD--GSPVAE-ASMVKQAWDAGGREAWREQAVGRGETTMTSGGKTLDYSYQSIVTEYMDEFAWPSTLPVPGRRGKRTGMGVDHVGRLLAGKRAEEPRRVL-DTGIVARLGAAADGALRAASPRHLSEMCRLKSPSPACRGLVLGLVAALGLRWRRWSDIRSRLLGNTSELVGFLKKFDKNRSGLTSATLGPFVEDPSLYPTHVRRVAKCMVWVARRWLRALHNYLAAREGNLGIGIGIDIGTASLFRTPSAAAALPDRASRPLHK--TNHGGVXXXXXXXXXXSAVEKASKRWPAAAE----IQGRPSGASEAAKEAPATQ--ADRRHTPTNDDESRDTRTKRRPSQAAATRGYGSSCPPLSTMTGGDVEGGSRMHGVC----GGKESEGEAAGVSFAGSSGGLNSESQWTAGTVTSRGDVLGAHTDDQVGMGSGAEARQDEENARTVRHRYDDSSSAGASSSV---------GVPASLRETWAARTTADKQERKGLACHFGF----APPVGERGGSRRELP-GGAQASHGCIYRHKHKARTPSRIANPKARRPTRTRTDPILANARWPPPAVVRNCDRTEQRSAFSIEHSFLAYE 2947
AR+DFKIYM KLLEHSTALD FR ++R+ D G GSG PAWGP L G+SE GGSVG +GSP A AA+ SPS FREE+ AWPRAGAVTPPRPRPPPNFSW+AEP P R L SA + P GGP D + G EGE+ D WKAQWSRRL RGPIHSEYQ RFPWPPRSA L T+ A P H RGR A++ G+ R DGG G + G G P GRR G L P +L + E T E +G T SV D +EW GR G D + AAD GS +A A+++ A D E WR +AVGRGE T SGG+TLD+S QSI+TEYMDE+AWPS+LP PGRRGKR+GMGVDHVGRLLAG+RAEEP R L D +VARLGAAAD AL A S HLSEMCRLKSP ACR L+LGLV ALGLRWRRWSDIR+ LLGN EL GFLK+F+K+R+GL S L PFVEDPSL P VRRVA CMVWV R WL ALH+YLA +EG +D+ T +F+ P+ + + A R HG V E R P A E Q R SG + AA AT ++++H + TR RRPS+AAATRG S+CPP ST TGGD EGGSR G GG+ +G V G L SESQWT GTVTSRGDVL T+DQV +GS + N R H++ AG GVPAS R+T D R G GF AP G RG RR L G QASH CIYRHKHK RTPSR+ANPKARRP + DPILAN RWPPP V +RTEQRSA+S+EHSFLAY+
Sbjct: 3 ARKDFKIYMDKLLEHSTALDTFRPDKRHSDAGDTGSGVPAWGPSL-GMSEEGGSVGEARGSPPAGAAVDVTMPPFSPSRFREEKHAWPRAGAVTPPRPRPPPNFSWMAEPGSPASRXXXXXXXXXXXXXXARKSLSSADLASSPAPAAGGPRIKGGRLSADLGMDDGGRSWGAEEEEGEEDA-DAWKAQWSRRLSRGPIHSEYQDRFPWPPRSAFLGTVDDDAFNGAPPPPHPRGRRASARGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYPR-DGGGVGGXXXXXXXXXXXXVDTAAAGRGGEGSPSDGRRAGTGRL---PGGDLEMAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSEQTSGLEVIGHRTSRASSVYDEKEWEAGR---GSEADGGWPSRAADVGGSSMAGGATLIGSAGDVAAAEVWRGEAVGRGEVTTMSGGRTLDFSSQSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVIALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPR-WLHALHDYLAVKEGK-----ELDVDTMPMFQEPATSRSRAKLARRRQSSGCRAHGTVPGTVPPDGASKGREG---RRPGAGEGGSGTQPRKSGTAAAAGATAATMGLSEQKHDQGHHHGRGGTRKTRRPSRAAATRGDDSTCPPGSTPTGGDTEGGSRGEGFRYFGEGGRGGDGGKVDVD-----GDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVGGGKGNVRKAPHKH-----AGXXXXXXXXXXXXXXGVPASPPRR-RVRSTGDAARRAGTGT-LGFEETLAPKGGRRGSVRRGLSRGDTQASHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILANTRWPPPVDVPAQERTEQRSAYSLEHSFLAYD 1008
BLAST of mRNA_C-linearis_contig11.1295.1 vs. uniprot
Match: A0A6H5JPQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ9_9PHAE) HSP 1 Score: 107 bits (267), Expect = 4.390e-24 Identity = 56/87 (64.37%), Postives = 62/87 (71.26%), Query Frame = 2
Query: 2687 PPVGERGGSRRELPGGAQASHGCIYRHKHKARTPSRIANPKARRPTRTRTDPILANARWPPPAVVRNCDRTEQRSAFSIEHSFLAYE 2947
P RGG R GG Q SH CIYRHK K RTPSR+ANPKARRP + DPILAN RWPPP V +RTEQRSA+S+EHS LAY+
Sbjct: 8 PRRAARGGLSR---GGTQVSHACIYRHKLKGRTPSRVANPKARRPVQAAHDPILANIRWPPPVDVPAQERTEQRSAYSLEHSSLAYD 91 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1295.1 >prot_C-linearis_contig11.1295.1 ID=prot_C-linearis_contig11.1295.1|Name=mRNA_C-linearis_contig11.1295.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=973bp MLSGKSGFSQPQSIEQARQDFKIYMSKLLEHSTALDAFRSEERYVDVGAAback to top mRNA from alignment at C-linearis_contig11:2343224..2350894+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1295.1 ID=mRNA_C-linearis_contig11.1295.1|Name=mRNA_C-linearis_contig11.1295.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7671bp|location=Sequence derived from alignment at C-linearis_contig11:2343224..2350894+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:2343224..2350894+ >mRNA_C-linearis_contig11.1295.1 ID=mRNA_C-linearis_contig11.1295.1|Name=mRNA_C-linearis_contig11.1295.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5838bp|location=Sequence derived from alignment at C-linearis_contig11:2343224..2350894+ (Chordaria linearis ClinC8C monoicous)back to top |