mRNA_C-linearis_contig11.1291.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1291.1
Unique NamemRNA_C-linearis_contig11.1291.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 3.780e-61
Identity = 103/132 (78.03%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGG VSWFSRTQKCVT STTE AEYVAL DV KE+LFLRQ+WRF+LP+ GM  IP+FEDN+GAI LA NPISNSNSKHIDVR HFLRELVERKEI VI +VPS YQ ADFLTK+L   +AFE HRD VMNL
Sbjct:   82 CGGGAVSWFSRTQKCVTLSTTE-AEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI-HVPSPYQRADFLTKSL-PKDAFESHRDFVMNL 210
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BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 7.560e-61
Identity = 103/132 (78.03%), Postives = 113/132 (85.61%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGG VSWFSRTQKCVT STTE AEYVAL DV KE+LFLRQ+WRF+LP+ GM  IP+FEDN+GAI LA NPISNSNSKHIDVR HFLRELVERKEI VI +VPS YQ ADFLTK+L + +AFE HRD VMNL
Sbjct:  127 CGGGAVSWFSRTQKCVTLSTTE-AEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI-HVPSPYQRADFLTKSL-SKDAFESHRDFVMNL 255
[Close]
BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.030e-59
Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGG VSWFSRTQKCVT STTE AEYVAL +V K +LFLRQ+WRF+LP+ GM  IP+FEDN+GAI LA NPISNSNSKHIDVR HFLRELVERKEI VI +VPS YQ ADFLTK+L + +AFE HRD VMNL
Sbjct:   87 CGGGAVSWFSRTQKCVTLSTTE-AEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI-HVPSPYQRADFLTKSL-SKDAFESHRDFVMNL 215
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BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.450e-59
Identity = 100/132 (75.76%), Postives = 113/132 (85.61%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGG VSWFSRTQKCVT STTE AEYVAL DV KE++FLRQ+WRF+LP+ GM  IP+FEDN+GAI LA NPISNSNSKHIDVR HFLRELVERKEI VI +VPS YQ ADFLTK+L + ++FE HR+ VMNL
Sbjct:   98 CGGGSVSWFSRTQKCVTLSTTE-AEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI-HVPSPYQRADFLTKSL-SKDSFESHREFVMNL 226
[Close]
BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.290e-59
Identity = 105/132 (79.55%), Postives = 111/132 (84.09%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGGVVSWFSRTQKCVT STTE A YVAL DV KE+LFLRQVWRF+LPK GM  IP+FEDN+GAI LA NPISNSNSKHIDVR HFLRELVERKEI VI +VPS YQ ADFLTK L   +AFE HRD VMNL
Sbjct:  222 CGGGVVSWFSRTQKCVTLSTTE-AGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI-HVPSPYQRADFLTKRL-PKDAFESHRDFVMNL 350
[Close]
BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 3.520e-58
Identity = 103/132 (78.03%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGG VSWFSRTQKCVT STTE AEYVAL DV KE+LFLRQ+WRF+LP+ GM  IP+FEDN+GAI LA NPISNSNSKHIDVR HFLRELVERKEI VI +VPS YQ ADFLTK+L   +AFE HRD VMNL
Sbjct:  333 CGGGAVSWFSRTQKCVTLSTTE-AEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI-HVPSPYQRADFLTKSL-PKDAFESHRDFVMNL 461
[Close]
BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5KEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM4_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.400e-58
Identity = 98/132 (74.24%), Postives = 110/132 (83.33%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGG VSWFSR QKCVT STT EAEYV L DV K++LFLRQ+WRF+LP+ GM  IP+FEDN+GAI LA NPISNSNSKH DVR HFLRELVERKE+ VI +VPS YQ ADFLTK+L + +AFE HRD VMNL
Sbjct:  215 CGGGAVSWFSRRQKCVTLSTTTEAEYVVLGDVVKKILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHTDVRHHFLRELVERKEMSVI-HVPSPYQRADFLTKSL-SKDAFESHRDFVMNL 344
[Close]
BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5JC89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC89_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 4.630e-58
Identity = 105/132 (79.55%), Postives = 113/132 (85.61%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGGVVSWFSRTQKCVT STTE AEYVAL DV KE+LFLRQVWRF+LPK GM  IP+FEDN+GAI LA NPISNSNSKHIDVR HFLR+LVERKEI VI +VPS YQ ADFLTK+L   +AFE HRD VMNL
Sbjct:  448 CGGGVVSWFSRTQKCVTLSTTE-AEYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRQLVERKEISVI-HVPSPYQRADFLTKSL-PKDAFESHRDFVMNL 576
[Close]
BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 4.680e-58
Identity = 98/132 (74.24%), Postives = 109/132 (82.58%), Query Frame = 1 
Query:    4 CGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            CGGG VSWFSRTQKCVT STTE AEYV+L D  KE+LFLRQ+WRF+LP+ GM  IP+FEDN+GAI LA NPISNSNSKHIDVR HFLRELVERK I  I +VPS YQ ADFL K+L + +AFE HRD VMNL
Sbjct:   75 CGGGAVSWFSRTQKCVTLSTTE-AEYVSLGDAVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKAISAI-HVPSPYQRADFLPKSL-SEDAFESHRDFVMNL 203
[Close]
BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 6.480e-58
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 1 
Query:    1 MCGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPKAGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI*YVPSAYQHADFLTKALLANEAFEFHRDIVMNL 399
            MCGGG V+WFSRTQKCVT STTE AEYVA+ADV KE+LFLRQVWRF+LP AGM  IP+FEDN+GAI +A+NPI+NSNSKHIDVR HF+RELVERKEI +   VP+ +QHADFLTKA+ + E+F  HRD VMNL
Sbjct:  191 MCGGGCVTWFSRTQKCVTLSTTE-AEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISIT-NVPTPFQHADFLTKAI-SKESFALHRDFVMNL 320
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUW6_9PHAE3.780e-6178.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE7.560e-6178.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE1.030e-5976.52Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIJ7_9PHAE1.450e-5975.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF9_9PHAE2.290e-5979.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE3.520e-5878.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEM4_9PHAE4.400e-5874.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC89_9PHAE4.630e-5879.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7L4_9PHAE4.680e-5874.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE6.480e-5873.68Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2312576..2313044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue8.5e-13
Seed eggNOG ortholog4558.Sb06g013016.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INKC@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size469
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927453.5482745-CDS-C-linearis_contig11:2312575..23128781622927453.5482745-CDS-C-linearis_contig11:2312575..2312878Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2312576..2312878 +
1690879709.7390678-CDS-C-linearis_contig11:2312575..23128781690879709.7390678-CDS-C-linearis_contig11:2312575..2312878Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2312576..2312878 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927453.5585015-UTR-C-linearis_contig11:2312878..23130441622927453.5585015-UTR-C-linearis_contig11:2312878..2313044Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2312879..2313044 +
1690879709.7530234-UTR-C-linearis_contig11:2312878..23130441690879709.7530234-UTR-C-linearis_contig11:2312878..2313044Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2312879..2313044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1291.1prot_C-linearis_contig11.1291.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2312576..2312878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1291.1

>prot_C-linearis_contig11.1291.1 ID=prot_C-linearis_contig11.1291.1|Name=mRNA_C-linearis_contig11.1291.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=101bp
MCGGGVVSWFSRTQKCVTTSTTEEAEYVALADVTKELLFLRQVWRFLLPK
AGMLLIPMFEDNEGAISLANNPISNSNSKHIDVRRHFLRELVERKEIKVI
*
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mRNA from alignment at C-linearis_contig11:2312576..2313044+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1291.1 ID=mRNA_C-linearis_contig11.1291.1|Name=mRNA_C-linearis_contig11.1291.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=469bp|location=Sequence derived from alignment at C-linearis_contig11:2312576..2313044+ (Chordaria linearis ClinC8C monoicous)
ATGTGCGGGGGTGGTGTTGTGTCTTGGTTTTCTAGGACGCAGAAGTGTGT
GACCACCTCGACTACTGAAGAAGCGGAGTACGTAGCGTTGGCCGATGTAA
CGAAGGAATTGTTGTTCCTTAGGCAGGTGTGGCGTTTCCTACTGCCGAAG
GCTGGGATGCTTTTGATCCCGATGTTTGAGGATAACGAGGGAGCGATTTC
GTTGGCGAACAACCCCATTAGCAACTCGAACTCGAAGCACATTGATGTGC
GCCGCCACTTTCTGAGAGAGCTAGTTGAGAGGAAGGAGATTAAGGTGATT
TGATATGTGCCGTCGGCTTATCAGCATGCCGATTTCCTCACAAAGGCACT
ACTAGCCAACGAGGCTTTTGAGTTTCACCGGGACATTGTGATGAATTTGG
TTTGAGAGTCTCGTGTGATGCGTTTGTTGGAATAAGTTGAGGTAAGATTG
ATTGAACGGTTCTTTGTGG
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Coding sequence (CDS) from alignment at C-linearis_contig11:2312576..2313044+

>mRNA_C-linearis_contig11.1291.1 ID=mRNA_C-linearis_contig11.1291.1|Name=mRNA_C-linearis_contig11.1291.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at C-linearis_contig11:2312576..2313044+ (Chordaria linearis ClinC8C monoicous)
ATGTGCGGGGGTGGTGTTGTGTCTTGGTTTTCTAGGACGCAGAAGTGTGT
GACCACCTCGACTACTGAAGAAGCGGAGTACGTAGCGTTGGCCGATGTAA
CGAAGGAATTGTTGTTCCTTAGGCAGGTGTGGCGTTTCCTACTGCCGAAG
GCTGGGATGCTTTTGATCCCGATGTTTGAGGATAACGAGGGAGCGATTTC
GTTGGCGAACAACCCCATTAGCAACTCGAACTCGAAGCACATTGATGTGC
GCCGCCACTTTCTGAGAGAGCTAGTTGAGAGGAAGGAGATTAAGGTGATT
TGAATGTGCGGGGGTGGTGTTGTGTCTTGGTTTTCTAGGACGCAGAAGTG
TGTGACCACCTCGACTACTGAAGAAGCGGAGTACGTAGCGTTGGCCGATG
TAACGAAGGAATTGTTGTTCCTTAGGCAGGTGTGGCGTTTCCTACTGCCG
AAGGCTGGGATGCTTTTGATCCCGATGTTTGAGGATAACGAGGGAGCGAT
TTCGTTGGCGAACAACCCCATTAGCAACTCGAACTCGAAGCACATTGATG
TGCGCCGCCACTTTCTGAGAGAGCTAGTTGAGAGGAAGGAGATTAAGGTG
ATTTGA
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