mRNA_C-linearis_contig11.1279.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1279.1
Unique NamemRNA_C-linearis_contig11.1279.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1279.1 vs. uniprot
Match: D7FPP2_ECTSI (Ankyrin repeat domain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP2_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 3.470e-128
Identity = 218/367 (59.40%), Postives = 257/367 (70.03%), Query Frame = 1 
Query:   19 SDEDDAKQVAFLRARIVEATREGDTPEIRYLVGISAAKRLLTACDESSGWSLLHFSCSRGFLDITTTLVKAGADPLKALDKHGKTCLHIAIEHDRRDVVKMLLERHPVKKWPRQSKFTLGQTAARRGRRAIMKLLLDNGLDPNERGIRRETPLHQXXXXXXXXXXXXXXXXXXXVSAREAWAGRTPLHCACQSGSLEAATALILKGGADAHIPDLSAARHTPLEAAVVSGYRALSHRVVIMVDNRQKAEQKRYALLESFAVASREAAWRETKLAKNRVSSLRGRVVAKRLFVRLEKQQLAETVRGQLARANARLRNLQTQHERLQHRGNERRAQAMAA--------ARPSTCPTLPSAGGAPGGGHV 1095
            SD++DAK VAFLRAR+VEA REGDTPE++YL+GI+AAKRLL A DESS W LLHFSCSRGFLDITT L++AG   LKA+DKHGKTCLH+AIEHD RDV+++LL+ H                    G   +++LLL +G D                                 V+AREAWAGRTPLH ACQ+GSL+AATALI+KGGAD H+PDLSAARHTPLEAAVVSGYRALSHR+VI+VD+RQ+A++KR A+LE F +ASREA  RETKL KN VSSLRGRVV KR  VRLEKQQL ET+RG L+RA  RLRNLQ+QHERL H   E+ +   A          RPSTCPTL + GG  GG  +
Sbjct:   15 SDDEDAKHVAFLRARVVEAAREGDTPEMKYLMGITAAKRLLAATDESSRWGLLHFSCSRGFLDITTMLLEAGTKALKAVDKHGKTCLHVAIEHDCRDVIELLLDWH--------------------GHAEVIELLLRHGAD---------------------------------VTAREAWAGRTPLHYACQAGSLKAATALIIKGGADPHVPDLSAARHTPLEAAVVSGYRALSHRLVILVDSRQRADEKRQAILEGFDMASREAVRRETKLVKNAVSSLRGRVVGKRSLVRLEKQQLTETLRGHLSRAKTRLRNLQSQHERL-HAREEKCSPVTAVIPAASVPDCRPSTCPTLSATGGLRGGSRM 327
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPP2_ECTSI3.470e-12859.40Ankyrin repeat domain 3 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2178623..2181701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.1
Seed ortholog evalue9e-105
Seed eggNOG ortholog2880.D7FPP2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-16_001240.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1095
Cds size1095
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1279.1prot_C-linearis_contig11.1279.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2178623..2181701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927451.1359975-CDS-C-linearis_contig11:2178622..21787781622927451.1359975-CDS-C-linearis_contig11:2178622..2178778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2178623..2178778 +
1690879708.2767131-CDS-C-linearis_contig11:2178622..21787781690879708.2767131-CDS-C-linearis_contig11:2178622..2178778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2178623..2178778 +
1622927451.1465456-CDS-C-linearis_contig11:2179033..21791381622927451.1465456-CDS-C-linearis_contig11:2179033..2179138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2179034..2179138 +
1690879708.286464-CDS-C-linearis_contig11:2179033..21791381690879708.286464-CDS-C-linearis_contig11:2179033..2179138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2179034..2179138 +
1622927451.1559281-CDS-C-linearis_contig11:2179348..21794191622927451.1559281-CDS-C-linearis_contig11:2179348..2179419Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2179349..2179419 +
1690879708.2963858-CDS-C-linearis_contig11:2179348..21794191690879708.2963858-CDS-C-linearis_contig11:2179348..2179419Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2179349..2179419 +
1622927451.1693141-CDS-C-linearis_contig11:2179779..21799381622927451.1693141-CDS-C-linearis_contig11:2179779..2179938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2179780..2179938 +
1690879708.3159857-CDS-C-linearis_contig11:2179779..21799381690879708.3159857-CDS-C-linearis_contig11:2179779..2179938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2179780..2179938 +
1622927451.186089-CDS-C-linearis_contig11:2180144..21802621622927451.186089-CDS-C-linearis_contig11:2180144..2180262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2180145..2180262 +
1690879708.3289056-CDS-C-linearis_contig11:2180144..21802621690879708.3289056-CDS-C-linearis_contig11:2180144..2180262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2180145..2180262 +
1622927451.1967402-CDS-C-linearis_contig11:2180656..21808601622927451.1967402-CDS-C-linearis_contig11:2180656..2180860Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2180657..2180860 +
1690879708.3402822-CDS-C-linearis_contig11:2180656..21808601690879708.3402822-CDS-C-linearis_contig11:2180656..2180860Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2180657..2180860 +
1622927451.2060328-CDS-C-linearis_contig11:2181129..21812121622927451.2060328-CDS-C-linearis_contig11:2181129..2181212Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2181130..2181212 +
1690879708.352757-CDS-C-linearis_contig11:2181129..21812121690879708.352757-CDS-C-linearis_contig11:2181129..2181212Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2181130..2181212 +
1622927451.2185667-CDS-C-linearis_contig11:2181502..21817011622927451.2185667-CDS-C-linearis_contig11:2181502..2181701Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2181503..2181701 +
1690879708.3614998-CDS-C-linearis_contig11:2181502..21817011690879708.3614998-CDS-C-linearis_contig11:2181502..2181701Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2181503..2181701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1279.1

>prot_C-linearis_contig11.1279.1 ID=prot_C-linearis_contig11.1279.1|Name=mRNA_C-linearis_contig11.1279.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=365bp
MGPATRSDEDDAKQVAFLRARIVEATREGDTPEIRYLVGISAAKRLLTAC
DESSGWSLLHFSCSRGFLDITTTLVKAGADPLKALDKHGKTCLHIAIEHD
RRDVVKMLLERHPVKKWPRQSKFTLGQTAARRGRRAIMKLLLDNGLDPNE
RGIRRETPLHQASRHGHARVIELLLKHGADVSAREAWAGRTPLHCACQSG
SLEAATALILKGGADAHIPDLSAARHTPLEAAVVSGYRALSHRVVIMVDN
RQKAEQKRYALLESFAVASREAAWRETKLAKNRVSSLRGRVVAKRLFVRL
EKQQLAETVRGQLARANARLRNLQTQHERLQHRGNERRAQAMAAARPSTC
PTLPSAGGAPGGGHV
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mRNA from alignment at C-linearis_contig11:2178623..2181701+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1279.1 ID=mRNA_C-linearis_contig11.1279.1|Name=mRNA_C-linearis_contig11.1279.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3079bp|location=Sequence derived from alignment at C-linearis_contig11:2178623..2181701+ (Chordaria linearis ClinC8C monoicous)
ATGGGGCCTGCTACAAGAAGCGACGAAGACGATGCCAAGCAAGTCGCCTT
CCTTAGGGCACGCATAGTAGAGGCCACTCGGGAGGGAGACACGCCGGAGA
TCAGGTACCTGGTCGGGATCTCCGCCGCCAAACGGTTGTTGACAGCTTGC
GACGAGGTAAGGCCACGAGAGGGGTTGGCCATTGATTTTTTTTTAAAGCA
AGCAAGCCGTGCGTGAGTTCTCACGCATTATTTTTGTTGTTCCCAAGCTA
GACTCTGTCCTGTTACAATGCCAGTTTATCCGCACATCCCGCCCGAACAC
TTTGTAGACAGTTTTCAGGCACTAGCGCTGTAGGAGCATCCGCATCCTTC
GTCAGCCGACCCTCATTCGATCTATTGGTTGGTTGCTGCAATCCACTTAA
AATGCGACCAGAGCTCAGGGTGGAGCTTGTTGCACTTCAGCTGCAGCCGA
GGCTTTCTCGACATCACAACCACGTTGGTGAAAGCAGGCGCCGACCCGCT
AAAGGCACTAGACAAGGTGAGGTCCAGCTTGTTCGTCGTGTAGACTACTA
GTCTTTTCAGAACAAAAGGTATGAACGAACGCGCTCGTTCAAGCCAACAG
CGCAAAAGGGGCGCACATATCAATAGATACTCGTAGTTTGTAAGCATCTA
GCTCCGAGCAGGGACGTAACGTGTTCAAACCAAAGCGTGCTTTTCTCTTT
GCATCTATCTGTGAATGTGGTTGCAGCACGGCAAGACCTGCCTCCACATT
GCTATCGAGCATGACCGAAGGGACGTGGTGAAGATGCTGTTAGAAAGGTG
AAGGGGGGATTAATCCCAGGTAAATAATGTTTTCGTCAGCTCTCTACGCT
CTTAACGGCACTGCTCTTGTGGCCAGCTGCGCTCGGTAGTAAATCTTGCA
AACATGGCACCAGGCACAATTTGGCAGTAGGATATCGGCATTCCATGTAT
CCCTGATCGGCCAAGAGTCGTCGTTGGAGGGTGCACTATATACGGTACTG
CTGTAGATGAGTTCGGCTGGCTACGATGCTTCAATATTGTTGGATGCTGC
TGTTTTTCTGATGTCGCTACTGGTATTTATTTTCTGAATGCACTTGTCGA
TAGAGCCGCAGCTCTCAAGAAGCGCTCTGTAAATAATATTGTTGCCCCCA
TGTGCAGGCATCCGGTAAAAAAGTGGCCAAGACAGTCAAAGTTCACGTTA
GGGCAAACGGCGGCGCGAAGAGGACGCCGGGCGATCATGAAGCTCCTCTT
GGACAACGGGCTCGACCCCAACGAAAGAGGAATCCGGAGGGAAACACCTC
TTCACCAAGCGTCTAGGTACATTGGAGATGCGGCTGCTCAGATGGCTCTC
TCGAGGCTCAGGGCCCTGCTTGCCTGCATCCGGAATCGATTCCACGGTAT
CTGTGCAGATAGAAACGTATTCTTTGATGGCGTCTTGTATTCTTACATAG
GAGCGCCCCTTGCCAAACCCTCCTGCCAATATCCGACTGAACCGGCAATA
GATTATTTCGCTGTTGTCCCAGGCACGGACATGCAAGAGTGATCGAGCTC
CTTTTGAAGCATGGAGCGGACGTGTCTGCCAGAGAGGCGTGGGCTGGCCG
GACCCCTCTTCATTGCGCTTGCCAATCGGGCTCCCTTGAGGTTCGCCACC
CGCTCATGGCTCTACTTTTGCCGTGCAGATCAGTGCCTTTTTCGCAGCCA
AGCGTTGATGCAAGCATTGGCGCCGCGTAGGCAGTGCCCTTTGGACTCGT
TTTGTTTCAGCACGCGATAGATCGTGACGCCTTACGCAATGACAAAATGT
CTAGAGATGCCCTCCAATATGTTCCCAACATGTGTCTTGACATGACTCAT
CTTCCCGTGTGGCTTACCACACGCGGTGGGCAGTGCAAGAGGGCACCTCG
CGTTTCATCGAAATGGGTAAAGAGGCAATCTCGGATCCCCAAACCCCCTT
CGGCGTTGGCAACTACCGTAGCTGAGTTGGTTCGCGCCTCGTGCCTGGCC
GCTGGCCTGGGTTCCCAACACACGAATGCTACAGGCAGCAACTGCTCTGA
TTCTCAAAGGTGGGGCCGACGCCCACATACCGGATCTTTCGGCGGCAAGA
CATACTCCCCTCGAGGCTGCCGTCGTGTCTGGGTACAGGGCGCTCTCGCA
CCGCGTCGTGATTATGGTGGACAACCGCCAGAAGGCCGAACAGAAGAGAT
ACGCTCTTCTCGAAAGCTTCGCGGTAGCTTCGCGAGAGGTACACTACTTA
GTTGCCGTCACCTTCGTCGTTTGTGTAACATGCACCAGACCACTCGAGGG
TGGTCGCCAAGTGTCTCTACAAAGCGGCAAGATGTTCCGGCAGAAAATCC
TTTCCCGATTCCGTGGAGTTTTTAGGTTGTGAATCTACGTGTGCGTGTTG
AGGCTACTAGACTAGTGCGCCAACTGAGAAAACAAAAGACTGTTTTCCTG
CTTTTCCTTTTCCCCTGCCCACACCCCGTGACTCTTGCCACCGTGTGTAA
AAAGCAGGCAGCCTGGCGCGAGACTAAACTAGCAAAAAATAGGGTTTCTT
CTCTTAGGGGAAGAGTCGTCGCCAAACGTTTATTCGTCAGGTAATCAACG
CTACACTGTCTCAACCTGCTAAGAATACCGTTTAAGTACGTTCAAATTTC
ATTGGGGCTTGTGCTGAACAGAATCGACCCAAGACTTGGTAGCGCTAACC
CATAGACGATGAGTCCTTGTGAATGTCATGCCCGCTTGCGACACACAAGC
CTCTAATTGCTCATGTCCTTATCACGGAAGTTTTGCAAAGCAAAACAGCA
AAGTACAAACAATCAGGCTTCGCGTCCTGTTCCACACCCGACCTGTTTTG
TGTCCCCGTTCAACTCTGCCACCACCACAGGTTGGAAAAGCAACAGCTCG
CGGAAACCGTACGAGGGCAGCTCGCGCGAGCCAACGCGCGCCTCCGAAAC
CTGCAAACCCAACACGAACGCCTCCAACACAGGGGAAATGAGCGCAGAGC
CCAGGCTATGGCCGCTGCGCGTCCGAGCACGTGTCCAACCCTACCTAGTG
CCGGTGGCGCCCCAGGGGGCGGGCACGTG
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Coding sequence (CDS) from alignment at C-linearis_contig11:2178623..2181701+

>mRNA_C-linearis_contig11.1279.1 ID=mRNA_C-linearis_contig11.1279.1|Name=mRNA_C-linearis_contig11.1279.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at C-linearis_contig11:2178623..2181701+ (Chordaria linearis ClinC8C monoicous)
ATGGGGCCTGCTACAAGAAGCGACGAAGACGATGCCAAGCAAGTCGCCTT
CCTTAGGGCACGCATAGTAGAGGCCACTCGGGAGGGAGACACGCCGGAGA
TCAGGTACCTGGTCGGGATCTCCGCCGCCAAACGGTTGTTGACAGCTTGC
GACGAGATGGGGCCTGCTACAAGAAGCGACGAAGACGATGCCAAGCAAGT
CGCCTTCCTTAGGGCACGCATAGTAGAGGCCACTCGGGAGGGAGACACGC
CGGAGATCAGGTACCTGGTCGGGATCTCCGCCGCCAAACGGTTGTTGACA
GCTTGCGACGAGAGCTCAGGGTGGAGCTTGTTGCACTTCAGCTGCAGCCG
AGGCTTTCTCGACATCACAACCACGTTGGTGAAAGCAGGCGCCGACCCGC
TAAAGGCACTAGACAAGAGCTCAGGGTGGAGCTTGTTGCACTTCAGCTGC
AGCCGAGGCTTTCTCGACATCACAACCACGTTGGTGAAAGCAGGCGCCGA
CCCGCTAAAGGCACTAGACAAGCACGGCAAGACCTGCCTCCACATTGCTA
TCGAGCATGACCGAAGGGACGTGGTGAAGATGCTGTTAGAAAGCACGGCA
AGACCTGCCTCCACATTGCTATCGAGCATGACCGAAGGGACGTGGTGAAG
ATGCTGTTAGAAAGGCATCCGGTAAAAAAGTGGCCAAGACAGTCAAAGTT
CACGTTAGGGCAAACGGCGGCGCGAAGAGGACGCCGGGCGATCATGAAGC
TCCTCTTGGACAACGGGCTCGACCCCAACGAAAGAGGAATCCGGAGGGAA
ACACCTCTTCACCAAGCGTCTAGGCATCCGGTAAAAAAGTGGCCAAGACA
GTCAAAGTTCACGTTAGGGCAAACGGCGGCGCGAAGAGGACGCCGGGCGA
TCATGAAGCTCCTCTTGGACAACGGGCTCGACCCCAACGAAAGAGGAATC
CGGAGGGAAACACCTCTTCACCAAGCGTCTAGGCACGGACATGCAAGAGT
GATCGAGCTCCTTTTGAAGCATGGAGCGGACGTGTCTGCCAGAGAGGCGT
GGGCTGGCCGGACCCCTCTTCATTGCGCTTGCCAATCGGGCTCCCTTGAG
GCACGGACATGCAAGAGTGATCGAGCTCCTTTTGAAGCATGGAGCGGACG
TGTCTGCCAGAGAGGCGTGGGCTGGCCGGACCCCTCTTCATTGCGCTTGC
CAATCGGGCTCCCTTGAGGCAGCAACTGCTCTGATTCTCAAAGGTGGGGC
CGACGCCCACATACCGGATCTTTCGGCGGCAAGACATACTCCCCTCGAGG
CTGCCGTCGTGTCTGGGTACAGGGCGCTCTCGCACCGCGTCGTGATTATG
GTGGACAACCGCCAGAAGGCCGAACAGAAGAGATACGCTCTTCTCGAAAG
CTTCGCGGTAGCTTCGCGAGAGGCAGCAACTGCTCTGATTCTCAAAGGTG
GGGCCGACGCCCACATACCGGATCTTTCGGCGGCAAGACATACTCCCCTC
GAGGCTGCCGTCGTGTCTGGGTACAGGGCGCTCTCGCACCGCGTCGTGAT
TATGGTGGACAACCGCCAGAAGGCCGAACAGAAGAGATACGCTCTTCTCG
AAAGCTTCGCGGTAGCTTCGCGAGAGGCAGCCTGGCGCGAGACTAAACTA
GCAAAAAATAGGGTTTCTTCTCTTAGGGGAAGAGTCGTCGCCAAACGTTT
ATTCGTCAGGCAGCCTGGCGCGAGACTAAACTAGCAAAAAATAGGGTTTC
TTCTCTTAGGGGAAGAGTCGTCGCCAAACGTTTATTCGTCAGGTTGGAAA
AGCAACAGCTCGCGGAAACCGTACGAGGGCAGCTCGCGCGAGCCAACGCG
CGCCTCCGAAACCTGCAAACCCAACACGAACGCCTCCAACACAGGGGAAA
TGAGCGCAGAGCCCAGGCTATGGCCGCTGCGCGTCCGAGCACGTGTCCAA
CCCTACCTAGTGCCGGTGGCGCCCCAGGGGGCGGGCACGTGGTTGGAAAA
GCAACAGCTCGCGGAAACCGTACGAGGGCAGCTCGCGCGAGCCAACGCGC
GCCTCCGAAACCTGCAAACCCAACACGAACGCCTCCAACACAGGGGAAAT
GAGCGCAGAGCCCAGGCTATGGCCGCTGCGCGTCCGAGCACGTGTCCAAC
CCTACCTAGTGCCGGTGGCGCCCCAGGGGGCGGGCACGTG
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