mRNA_C-linearis_contig11.1226.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1226.1
Unique NamemRNA_C-linearis_contig11.1226.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig11.1226.1 vs. uniprot
Match: A0A6H5KUF2_9PHAE (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF2_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 5.360e-94
Identity = 155/249 (62.25%), Postives = 183/249 (73.49%), Query Frame = 2 
Query:  197 QQRQPFVSGIVDMAREVLRSVTCLLEQRDVVLLGATCRSLLEMERRFATGQEAFPLRLTVDEQRGNEDKAVHVDTKTGILKKTPRPGMGTIMANERVDKMTCYWEVKIEAFTGVRLEIGVATRRSIYRGGCNKDECWVFDCYGRACHRARVRGYGCKLKAGDVLGVLLNTADNSLSFFAQGVCMGTAFRNVRPPAPGLGLYPLIVLPSVAHETVRLTGCA-GRGGASSFSFPAPVGPLLATKRTWRARP 940
            ++R+PF  G+VDMA E LRSV CLLEQRD+V+LG TCRSL +++  F +G+EAFPL  TVDE+ GNED AV VDT+TG L+KTPRPGMGTIMA ERVDKMTCYWEVKI+ FTGVRLE+GVATRRSIYRGGC+KDECWV DCYGRACH  R+RGYGCKLKAGDVLGVLLNTAD+SLSFF +G+ +     +         LY L++L      T   T C  GR G S      P  PL   +  + +RP
Sbjct:   44 ERREPFAMGLVDMAGEFLRSVICLLEQRDMVILGGTCRSLRQIQGGFVSGEEAFPLLPTVDERHGNEDNAVEVDTETGALRKTPRPGMGTIMAKERVDKMTCYWEVKIQVFTGVRLEVGVATRRSIYRGGCDKDECWVIDCYGRACHGTRLRGYGCKLKAGDVLGVLLNTADDSLSFFVKGMHLTMVCSDD-------DLYTLVLL------TSSTTSCMLGREGLSR----TPHAPLPRCRSAFVSRP 275
[Close]
BLAST of mRNA_C-linearis_contig11.1226.1 vs. uniprot
Match: D8LU41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU41_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 2.430e-65
Identity = 103/135 (76.30%), Postives = 121/135 (89.63%), Query Frame = 2 
Query:  197 QQRQPFVSGIVDMAREVLRSVTCLLEQRDVVLLGATCRSLLEMERRFATGQEAFPLRLTVDEQRGNEDKAVHVDTKTGILKKTPRPGMGTIMANERVDKMTCYWEVKIEAFTGVRLEIGVATRRSIYRGGCNKDE 601
            ++R+PF  G+VDMA EVLRSVTCLLEQ D+V+LG TCRSL +++R FA+G+EAFPLR TVDE+ GNED AV VDT+TG+L+KTPRPGMGTIMA ERVDKMTCYWEV I+ FTGVRLE+GVATRRSIYRGGC+KDE
Sbjct:   43 ERREPFAMGLVDMAGEVLRSVTCLLEQHDMVILGGTCRSLRQIQRGFASGEEAFPLRPTVDERHGNEDNAVQVDTETGVLRKTPRPGMGTIMAKERVDKMTCYWEVNIQVFTGVRLEVGVATRRSIYRGGCDKDE 177
[Close]
BLAST of mRNA_C-linearis_contig11.1226.1 vs. uniprot
Match: A0A835YJW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW0_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.220e-51
Identity = 127/363 (34.99%), Postives = 176/363 (48.48%), Query Frame = 2 
Query:  224 IVDMAREVLRSVTCLLEQRDVVLLGATCRSLLEMERRFATGQEAFPLRLTVDEQRGNEDKAVHVDTKTGILKKTPRPGMGTIMANERVDKMTCYWEVKIEAFTGVRLEIGVATRRSIYRGGC----------NKDECWVFDCYGRACHRARVRGYGCKLKAGDVLGVLLNTADNSLSFFAQGVCMGTAFRNVRPPAPGL-------GLYPLIVLPSVAHETVRLTGCAGRGGASSFSFPAPVGPLLATKRTWRARPHP---NDFDLIVETYDAQVIHRLP--------------GLDPARTTVGGLKEALVKCNEMELFT--PGQLALRTQGALLTDDSVLLSATGVSFGSRGSQLQDIFLYV 1204
            + ++ +EVLRS+  +L  RD   L    +S   +   +        +R+ V       D+        G L +  RPG G I   +RVD ++CYWEV+++ FTG+RLEIGV +  ++  GG           ++   W FDC GRA H A  + YG  L AG V+GVL N    +L+FF  GVCMG A   VR  A          GLYP++++PSV  E V +     RG     + P  +  LLAT+  WR    P   +   LIVET+ A V +R+P                     TV  LK+ L +   ++ F   P  L L + GALL DDS  L   G+ FG  G+QLQD+FLYV
Sbjct:    1 MAELPQEVLRSILAMLSLRDAGSLLLASKSTQTLLDDYCMPHRPS-MRIRVSSGLLKTDR--------GKLSRASRPGSGVITGRDRVDGLSCYWEVELQHFTGLRLEIGVCSAAAVPDGGLGGSSGDSGCVDRAHTWTFDCAGRARHGAVTKAYGASLPAGAVVGVLFNARAATLTFFCDGVCMGVAHHQVRAAAXXXXXXXXXXGLYPIVIIPSVTGERVAVRAPRSRG-----ALPGHIPSLLATRHAWRPPTPPIPGSPRCLIVETFSAAVNYRVPLPGCTVGGSXXXXXXXXXXXATVRDLKQLLAQDEHLKAFAIEPSCLQLSSGGALLCDDSKTLDEVGIRFGENGAQLQDVFLYV 349
[Close]
BLAST of mRNA_C-linearis_contig11.1226.1 vs. uniprot
Match: A0A3B9UWP9_CLOSP (B30.2/SPRY domain-containing protein n=1 Tax=Clostridium sp. TaxID=1506 RepID=A0A3B9UWP9_CLOSP)

HSP 1 Score: 56.2 bits (134), Expect = 4.060e-5
Identity = 40/136 (29.41%), Postives = 65/136 (47.79%), Query Frame = 2 
Query:  503 YWEVKIE--AFTGVRLEIGVATRRSIYRGGCNKDECWVFDCY-GRACHRARVRGYGCKLKAGDVLGVLLNTADNSLSFFAQGVCMGTAFRNVRPPAPGLGLYPLIVLPSVAHETVRLTGCAGRGGASSFSFPAPVG 901
            YWEV  +  ++  V +  G    +S Y G  +    W + C  GR  + +  + YG +++  DVLGVLL+  + +LSF   G+ +G AF  +    P   L+P I   S  + T+         G++ F +P P G
Sbjct:   46 YWEVTCDNTSYAMVGVSTGEFNVQSRYAGSTSTS--WAYYCETGRVYNNSVNKVYGSQIRNNDVLGVLLDLNNKTLSFSKNGIMLGIAFEGL----PNTYLFPTIGQGSSTYSTILTVNF----GSTPFKYPIPEG 171
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KUF2_9PHAE5.360e-9462.25B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
D8LU41_ECTSI2.430e-6576.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YJW0_9STRA2.220e-5134.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3B9UWP9_CLOSP4.060e-529.41B30.2/SPRY domain-containing protein n=1 Tax=Clost... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1288923..1295075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog90675.XP_010416959.1
KEGG koko:K12169
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030163,GO:0032446,GO:0036211,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051726,GO:0060154,GO:0065007,GO:0070647,GO:0071704,GO:0098586,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Domain in SPla and the RYanodine Receptor.
EggNOG OGs37KFB@33090,3GB7T@35493,3HRDX@3699,KOG2242@1,KOG2242@2759,KOG4692@1,KOG4692@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_000120.1
EC2.3.2.27
COG Functional cat.O
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons9
Model size1719
Cds size1164
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927441.7806115-UTR-C-linearis_contig11:1288922..12894191622927441.7806115-UTR-C-linearis_contig11:1288922..1289419Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1288923..1289419 -
1690879702.5345228-UTR-C-linearis_contig11:1288922..12894191690879702.5345228-UTR-C-linearis_contig11:1288922..1289419Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1288923..1289419 -
1622927441.9010768-UTR-C-linearis_contig11:1295017..12950751622927441.9010768-UTR-C-linearis_contig11:1295017..1295075Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1295018..1295075 -
1690879702.6395063-UTR-C-linearis_contig11:1295017..12950751690879702.6395063-UTR-C-linearis_contig11:1295017..1295075Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1295018..1295075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927441.7937813-CDS-C-linearis_contig11:1289419..12895851622927441.7937813-CDS-C-linearis_contig11:1289419..1289585Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1289420..1289585 -
1690879702.5520222-CDS-C-linearis_contig11:1289419..12895851690879702.5520222-CDS-C-linearis_contig11:1289419..1289585Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1289420..1289585 -
1622927441.8098612-CDS-C-linearis_contig11:1289840..12899111622927441.8098612-CDS-C-linearis_contig11:1289840..1289911Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1289841..1289911 -
1690879702.5616765-CDS-C-linearis_contig11:1289840..12899111690879702.5616765-CDS-C-linearis_contig11:1289840..1289911Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1289841..1289911 -
1622927441.819906-CDS-C-linearis_contig11:1290364..12904491622927441.819906-CDS-C-linearis_contig11:1290364..1290449Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1290365..1290449 -
1690879702.5698462-CDS-C-linearis_contig11:1290364..12904491690879702.5698462-CDS-C-linearis_contig11:1290364..1290449Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1290365..1290449 -
1622927441.8318644-CDS-C-linearis_contig11:1291124..12912821622927441.8318644-CDS-C-linearis_contig11:1291124..1291282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1291125..1291282 -
1690879702.5780382-CDS-C-linearis_contig11:1291124..12912821690879702.5780382-CDS-C-linearis_contig11:1291124..1291282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1291125..1291282 -
1622927441.8431442-CDS-C-linearis_contig11:1291548..12916891622927441.8431442-CDS-C-linearis_contig11:1291548..1291689Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1291549..1291689 -
1690879702.5875041-CDS-C-linearis_contig11:1291548..12916891690879702.5875041-CDS-C-linearis_contig11:1291548..1291689Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1291549..1291689 -
1622927441.8558729-CDS-C-linearis_contig11:1292160..12922731622927441.8558729-CDS-C-linearis_contig11:1292160..1292273Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1292161..1292273 -
1690879702.5994759-CDS-C-linearis_contig11:1292160..12922731690879702.5994759-CDS-C-linearis_contig11:1292160..1292273Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1292161..1292273 -
1622927441.8674462-CDS-C-linearis_contig11:1292908..12930301622927441.8674462-CDS-C-linearis_contig11:1292908..1293030Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1292909..1293030 -
1690879702.6095562-CDS-C-linearis_contig11:1292908..12930301690879702.6095562-CDS-C-linearis_contig11:1292908..1293030Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1292909..1293030 -
1622927441.8783739-CDS-C-linearis_contig11:1293358..12934721622927441.8783739-CDS-C-linearis_contig11:1293358..1293472Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1293359..1293472 -
1690879702.6203768-CDS-C-linearis_contig11:1293358..12934721690879702.6203768-CDS-C-linearis_contig11:1293358..1293472Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1293359..1293472 -
1622927441.8892772-CDS-C-linearis_contig11:1294823..12950171622927441.8892772-CDS-C-linearis_contig11:1294823..1295017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1294824..1295017 -
1690879702.6299367-CDS-C-linearis_contig11:1294823..12950171690879702.6299367-CDS-C-linearis_contig11:1294823..1295017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1294824..1295017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1226.1prot_C-linearis_contig11.1226.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1289420..1295017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1226.1

>prot_C-linearis_contig11.1226.1 ID=prot_C-linearis_contig11.1226.1|Name=mRNA_C-linearis_contig11.1226.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=388bp
MDVTHAVETVASKLEDLLVEGNQGDDGSAASDLLLLRGDDGDAPHPQQRQ
PFVSGIVDMAREVLRSVTCLLEQRDVVLLGATCRSLLEMERRFATGQEAF
PLRLTVDEQRGNEDKAVHVDTKTGILKKTPRPGMGTIMANERVDKMTCYW
EVKIEAFTGVRLEIGVATRRSIYRGGCNKDECWVFDCYGRACHRARVRGY
GCKLKAGDVLGVLLNTADNSLSFFAQGVCMGTAFRNVRPPAPGLGLYPLI
VLPSVAHETVRLTGCAGRGGASSFSFPAPVGPLLATKRTWRARPHPNDFD
LIVETYDAQVIHRLPGLDPARTTVGGLKEALVKCNEMELFTPGQLALRTQ
GALLTDDSVLLSATGVSFGSRGSQLQDIFLYVPHLIS*
back to top

mRNA from alignment at C-linearis_contig11:1288923..1295075-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1226.1 ID=mRNA_C-linearis_contig11.1226.1|Name=mRNA_C-linearis_contig11.1226.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6153bp|location=Sequence derived from alignment at C-linearis_contig11:1288923..1295075- (Chordaria linearis ClinC8C monoicous)
GCTTCGGCAGGGTGGCTTATCGGACGCTCGGAGCGCTTCAGTTGCCTCAG
AGCGGAAAATGGATGTAACCCATGCGGTCGAGACTGTCGCCAGCAAGCTC
GAAGACCTCTTGGTCGAAGGTAACCAGGGAGATGATGGTTCTGCTGCTTC
GGACCTGTTGTTACTGCGGGGAGATGACGGGGATGCTCCGCACCCTCAGC
AACGCCAGCCTTTCGTGTCGGGCATAGTGGATATGGCCAGAGAAGTGCTG
AGGTATGGTACGGCGCCGCGTTTTGTGTGTGTGTTTGCTGCTGTTCTCGT
CGTGTACATGGCTGCCCTCTGTCTCTACTCTTGTTCCTAAGCGTCGGTGT
TATGGGCGCACTTCAATTCAACCATGTGTGTGTGTGTGTTGTTGTTGTTG
TTGTCTTCACATTAAAAACCATCCCGGTCTCTCCACCCAGTACCCCCCTT
CGTCCGTACTGATCCAACAGACACGGCCAATTCCCGTGGTCACAGAGCGC
AAGGAGCCTACCATAAATATCCCCAAAAACCATAATAACGTGGCTAGCAG
AAAACGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGCGACAGTCCCTTT
CCGATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTTAGAGTACTG
CACGTGTTCAGTGTATTTTTCTGTACAACTAGAACCAACCGGGGTCACAC
TGGAGGGGGTAAACACTGGTGCTTTTTCCTTCTTTTTCTGTTTCTTTTTT
GCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTATCGCGAGAAGGG
TGCAGCCGTCCCTTCCCTCGTCAACGTGCTAAGTCGAAGTTTGATACTCA
CGAGCTTTTTCAGCTATGTCATCGCTTTCACCGGCAAAGCCGCAAAATAA
TCACCTTTGCTTGGAACTGAACTCCAGACTTTGCTACTAGTGGGTTCGAG
GGTTCGAGGTTAAACCACTAGGCCACCGGGGCGACCGGCTGTACAGCAGG
CATTGATAGTCCAGTAGATAGTGGTCTGCATAAGGTCCAATGCATAACCA
GCAGAAACGCTGTAGATCCTTGATGTCTTCTATACAACCGCTATCAGTTA
CTAGAGAGTGCACTCGGAGGTAGACCCTAGCCTGAGTACATTATACGGGC
TAGGGGATCGTGCCTGCGACATACGAGCGACAGCCCCAGAATTCGGGGCG
ACGCATTATACGAATCGCCTCACCTCTTACACCTCACCAACCTTTCCACA
ATTACCAACTCAAGAATAGCGCCACCACAACATCTCGCATCCCAGTTGTC
TAGGCACCCCGCACGCTGCAATATTCACTGACCCATATCGAGGACATCTC
TCAGACGTTAGCACGTACCAGTACAGCAGATCACGGCCGGATAAGGTGTG
CTCCCTCTCTTGATACAAACCTCTCGGCGGCGGTCGACGCAACAGCCAAC
GGCATTTTCGCCGTCAGAAACGATCCTACAGCCCTAGTGTCAACGTAGCG
AACTCAGTTTCTTGTTCTGGACCCCTCCGCTTTGCCTGGCCTCCGCGTTG
CTTGCCTTTGCGGGTTTGCACTCGTTACACTCTCTGGATATCTGGACATG
TAGATCCGTGACGTGCTTGCTGGAGCAGCGGGACGTCGTTCTCCTCGGAG
CAACGTGCCGATCCCTGCTCGAGATGGAGAGACGGTTTGCTACCGGCCAG
GAGGCGTTCCCTCTGCGGTGAGTCGGTTACCTAGTTTCTCGAGCAGGTGT
AGGCGGAGATTTAGGTACATTTGGTGATGGTGAGGAATGTAGCGGGTCTA
CTTGTACATAGACACGTGCGAGCGAACTGAGAATTGTGTCAGACCCTGGT
GGTGCTGCCGCGCACCATGTCACTTCGTGTAAGCAGCAACATGGCCCCAA
GCAGCAGCAGTCCGCTCTTGTTCTTCCGTTCCTGCTTGTAAGTTGCCGCA
TGGCTACCATTTTGGCTGCTGTTTTCTCTTGTTCCAAACCTATTACTCTG
TTTTTTGCTTGAAAGCGGTCACTGCTCTCTTGTTTTGAACAACAGGCTCA
CGGTCGACGAGCAGCGCGGCAACGAGGACAAGGCGGTCCATGTAGACACG
AAAACCGGCATCTTAAAGAAGACGCCCCGGCCGGGCATGGGCACCATCAT
GGCCAATGAAAGAGTCGGTGAGGCAGAGGCTTGCAGCCAGACAGGCAACT
ATCAAGATCGTTGTAGCTCGCGGGAACCACTCGAATGCCCATTTTTGCGG
TCTTCGTTGGCCACGGAGCATATCTGCCTCTTTTGCCCGTCCGGCAGAAG
AGAGTGATACCGGGCATTGGCGTACACCCCCCGGACCGCTCTCGAGCTTG
TTTGATCCACCACAGCAGGGCGGGGCGGGTGTGACAATAGTCGTAGTGTT
GACGGATCGATTTGTCGTGGTGCCTCCTTGCCCTCCTCCTTTTGGCCTTG
CAACCCCCAGTGGCAACACGTCCGTGTTGCTCAGCAGCACCTTCCATGCA
TCTTTTGTCGTGGACTTCAGCCAAATCAACTTCTTGTGATCGTCCGGTCT
ATGTCGATGCTTGCGTGGGTGCGCTCTTGCAAGCTGCAGCGCAAGTACCA
ACAGCAGTCGATAGCTGTACTTAAGGGGTCAGTAGTTGAGTGTCAGAGAG
CAGGAATGCCTACTCCTCAGGCCCCGCGCGTACCGATATCGCAGGGCTCC
GCCCAAGCCCAGAAAATGCTTCCTTCGTTGCTTCCTCTGAATCCTCCCTT
AACGGGGTGTCTCGAATGTGCGCGTTTCTGTGCGTGTGGCACCCCCCCGC
AGATAAGATGACGTGCTACTGGGAGGTGAAGATAGAAGCCTTCACGGGGG
TTCGGCTGGAGATCGGAGTGGCGACACGTCGCAGCATATACAGAGGAGGA
TGCAACAAGGACGAGGTGTGCGTTATGTGTTCGCGCGCGTTTTCTCCCGT
TTTCTAACTCGTTTTTTGTTCGTTTTTTGTTCGTATTTTTGTTCGTTTTC
TAGCTCGTTTTTTGTTCAGTTTTTGCCTCTGTTTCCGAGCATCAGCTCTT
TCTTCCTCTACGCACGTTGCTTCTTTTAGAGGAGTGCCTCTGTTCAGGAT
TTAGAGTGGGGCTCTCGGCGTTAAAACGTGAAGCCAATAACAAGAAGGTA
CTGTTGTTCTTGACGAAAGGATCCAACACATTTCAGGCCATGTAACGACC
ACGTAGTATTTCTCTGGATACATGGAGGACACGAACATAATTCCGTCGCC
GACTGATCAGTTCATTGATTCCAAATCCACTTCCCTGCGATTTCTGGTAT
ACCGTCGCATGCTCATCCCGCAACCTCTCCTCGCTGTTTGCGCCGCCACC
GCCGCCCTTTTGTTGGGTCGATCGACTCATCGGCAGTGCTGGGTGTTCGA
TTGCTATGGCCGCGCCTGCCACAGGGCCCGCGTGCGGGGCTACGGGTGCA
AGCTCAAGGCCGGCGACGTGCTCGGCGTGCTGCTCAACACCGCCGACAAC
TCGCTCTCCTTCTTTGCGCAAGGTGTGGTGGATGCGGGTATGCGGGACGT
TGCTGCTTGCGTTTTGTCAGAGAGAGCGTGCTTGTTGGTGATGAAACGGT
GGGACCGTTTGCGGCATGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGT
GGTGGTGATGGTGGTGATGGTGGTGGTGGCGTTGTTGTTGTTGGTGGTTT
TTGGGTGTAGTTGTTTGTCGTTGCTCGCTTGCCCAAAGCTTCCCTAACCC
CTAGCCCGCCGTGTCCACGAAACGCGTGTATCCCAAAGGCGAGTGCATGG
GGACGGCCTTCCGGAACGTGCGCCCCCCCGCCCCGGGGCTCGGACTGTAC
CCCCTCATCGTGCTCCCGAGCGTTGCGCACGAGACTGTCAGGCTTACGGG
ATGCGCCGGGCGAGGCGGTGCCTCGTCCTTCTCGTTCCCGGCTCCTGTAG
GGTGAGAGCAAGACATTGAGAGAGTAAGAACCCACGTGTACGTGTGTCGT
GCCCTCCGTGACAGAGCGCAACTGATATCGCTCTCTCATCTTTTGTTGGC
CGGGTTGGAAAAAATTGTCGTCGGTTCTTTCGCCTCGCGTGGTTTTTTGG
TTTGAAGTATCTAGAGACGACAAACACGTGAGTTTGGGCTTCTGTTCTCC
GTGCCTTTCGCTTCTCGTCTTCATGTCGTCCATTGCTATACTTCAGTGCT
GGTTGTTCGTTAAGCTGCAAGATGTATTTTTTTCTTTTTCTCCGGTGCTG
CTTGCTCTTGGTGCATGTGAGATCGCTCGTTTTTTCTCGGAAGAATTTCA
GTTTCGTCTAAGGCTCTTGTAGCGCAGGGTTCGTGCGTTCTTTGTTTTGT
GCTGCTGCCATGTCTCTCCGGAGTGCGCGACTATCGTTCGTTTCCGCGCT
TCTTGTACAGCCATGCAGCGAGAACAAGATGCTCACACAATAGCAGCGAT
ACCGCTGTGCCATGCCAACGTCTACCGGCGGCATCGGGCGCCTTCTGTGT
GCCCCTGATGAATGCGTGTAACCGCCGCCAGGCTGACGCTGGTGCCTTGT
CGCGCTTATACCGTCCCATGCCCTGCTCTGTTGGCCCTTCCATTTCTCTT
GTCTGTTCGATTTGGCCGGCGCCAAGGCCTTTGTTAGCGACGAAGCGGAC
GTGGCGGGCGCGGCCACACCCGAACGACTTCGACCTCATCGTAGAGACGT
ACGATGCTCAGGTGCGGGATAGTAGCGAAGGAGAACAATATGAAGACGGG
CAGAGTACGGGAGGGGAATCGGCTGCGTGTGTTTTTCCACGCAAGCAGAG
AGAATGAGGAGGTTGAAAACGTTTTCCACGCGAGAGACGTAAATTGTTTT
CACCTTTGCGTCGGACTGACTGCTGAAGCCGTTTCAATCATCAACTCTTT
GTTGTTGGTGACTCATGGCGGCCTCAAAACCTGGTGATTGATCGCTGAGA
TGTGCCGCGTGCCGCACACAGCAGGATGGAAAAGCTTATTCTCTCCGCCA
TACCGGCCCGAATGGCAAGTTGTCTCGCCTCAGTACGAAGCTGAAGCAGC
CCTTCGAGCGTGTGACTGTGCGCCACTTATGTTGTTGACCAAAACCTTTC
CGGACTTCACGGATTTTGTCGTCTGTGCTCTCGCGGGCATGGGCCGCCCT
TTTCCTTCGACCAGGTTATTCACCGTCTACCAGGTTTGGATCCGGCCCGT
ACGACGGTGGGCGGCCTGAAAGAGGCCCTTGTCAAGTGAGTCGTGGGTTA
AGGCTGTTCGCTTCTTTTCTCCCTTCGCTGTTGTTGACAGTCCCACAGCG
CTTACAACGTACCCAACAAAAATAGAACTTCGAAGTAGTATTTAGATACC
GCGTTCCGCTCTTCAAAACGTTTCGAGTATCCAGCCTACTCTCTTGTGCT
CCCACGAGTCTACGACTGGTTGAGAGATCCATCAGCACACCGCATTCTCG
GAACGGCGAAACGACCATATCCTGCCCTCGCTGCTTGCAGGTGCAACGAG
ATGGAGTTGTTCACCCCGGGGCAGCTGGCGCTACGCACGCAGGGGGCCCT
GCTGACGGACGACTCCGTACTCCTGAGCGCGACGGGCGTGTCGTTTGGCT
CTCGGGGGAGCCAGCTCCAAGACATTTTCCTCTACGTGCCGCATCTGATC
AGCTAGCTGTCGTCCGTTAGCTCTGTGTTTTTGTTGAGTTTCTTGGCCCT
CGAGCTCGAGCTCGGATGTAGTGTTTCTTTTGGAACACTGGTTCCGTGGC
CCTGGGTGCCGCCCCTTCTTCTTCCCCGTCTTTTCTTGGCCCTTTCCTCG
CTAAGCAGTTTTTTTTTTTTTCGCGTCCTTCCCAGCAGTGGTGGTTTCGA
GGTCGGGAGTTATGTGCTCGGTTTCGGGGGCGTCTTTCGGTTGCTGTTTT
GACCCTCGTGCGCGAGAATGTTTATACGCTGTCCAAGCGAAATGGAAGGG
AGACAGACATACTTACCAGCAGGCATGCTGATGACGGCAAGTTTGAGCGA
AGCCCAGGACTTCCTGATCACCGCTTTTGACTATCCGGAAAACCCAAGCG
TGGTGTCGTGAGGATGGAGGCACGTACATACGTAGGGCTCTTCAGCCTTT
GGCGGAGTTCGATTCTGGTATTTACTCTTTTGGACTAAAACATTTAAATT
TAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:1288923..1295075-

>mRNA_C-linearis_contig11.1226.1 ID=mRNA_C-linearis_contig11.1226.1|Name=mRNA_C-linearis_contig11.1226.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2328bp|location=Sequence derived from alignment at C-linearis_contig11:1288923..1295075- (Chordaria linearis ClinC8C monoicous)
ATGGATGTAACCCATGCGGTCGAGACTGTCGCCAGCAAGCTCGAAGACCT
CTTGGTCGAAGGTAACCAGGGAGATGATGGTTCTGCTGCTTCGGACCTGT
TGTTACTGCGGGGAGATGACGGGGATGCTCCGCACCCTCAGCAACGCCAG
CCTTTCGTGTCGGGCATAGTGGATATGGCCAGAGAAGTGCTGAGATGGAT
GTAACCCATGCGGTCGAGACTGTCGCCAGCAAGCTCGAAGACCTCTTGGT
CGAAGGTAACCAGGGAGATGATGGTTCTGCTGCTTCGGACCTGTTGTTAC
TGCGGGGAGATGACGGGGATGCTCCGCACCCTCAGCAACGCCAGCCTTTC
GTGTCGGGCATAGTGGATATGGCCAGAGAAGTGCTGAGATCCGTGACGTG
CTTGCTGGAGCAGCGGGACGTCGTTCTCCTCGGAGCAACGTGCCGATCCC
TGCTCGAGATGGAGAGACGGTTTGCTACCGGCCAGGAGGCGTTCCCTCTG
CGATCCGTGACGTGCTTGCTGGAGCAGCGGGACGTCGTTCTCCTCGGAGC
AACGTGCCGATCCCTGCTCGAGATGGAGAGACGGTTTGCTACCGGCCAGG
AGGCGTTCCCTCTGCGGCTCACGGTCGACGAGCAGCGCGGCAACGAGGAC
AAGGCGGTCCATGTAGACACGAAAACCGGCATCTTAAAGAAGACGCCCCG
GCCGGGCATGGGCACCATCATGGCCAATGAAAGAGTCGGCTCACGGTCGA
CGAGCAGCGCGGCAACGAGGACAAGGCGGTCCATGTAGACACGAAAACCG
GCATCTTAAAGAAGACGCCCCGGCCGGGCATGGGCACCATCATGGCCAAT
GAAAGAGTCGATAAGATGACGTGCTACTGGGAGGTGAAGATAGAAGCCTT
CACGGGGGTTCGGCTGGAGATCGGAGTGGCGACACGTCGCAGCATATACA
GAGGAGGATGCAACAAGGACGAGATAAGATGACGTGCTACTGGGAGGTGA
AGATAGAAGCCTTCACGGGGGTTCGGCTGGAGATCGGAGTGGCGACACGT
CGCAGCATATACAGAGGAGGATGCAACAAGGACGAGTGCTGGGTGTTCGA
TTGCTATGGCCGCGCCTGCCACAGGGCCCGCGTGCGGGGCTACGGGTGCA
AGCTCAAGGCCGGCGACGTGCTCGGCGTGCTGCTCAACACCGCCGACAAC
TCGCTCTCCTTCTTTGCGCAAGGTGTGTGCTGGGTGTTCGATTGCTATGG
CCGCGCCTGCCACAGGGCCCGCGTGCGGGGCTACGGGTGCAAGCTCAAGG
CCGGCGACGTGCTCGGCGTGCTGCTCAACACCGCCGACAACTCGCTCTCC
TTCTTTGCGCAAGGTGTGTGCATGGGGACGGCCTTCCGGAACGTGCGCCC
CCCCGCCCCGGGGCTCGGACTGTACCCCCTCATCGTGCTCCCGAGCGTTG
CGCACGAGACTGTCAGGCTTACGGGATGCGCCGGGCGAGGCGGTGCCTCG
TCCTTCTCGTTCCCGGCTCCTGTAGGTGCATGGGGACGGCCTTCCGGAAC
GTGCGCCCCCCCGCCCCGGGGCTCGGACTGTACCCCCTCATCGTGCTCCC
GAGCGTTGCGCACGAGACTGTCAGGCTTACGGGATGCGCCGGGCGAGGCG
GTGCCTCGTCCTTCTCGTTCCCGGCTCCTGTAGGGCCTTTGTTAGCGACG
AAGCGGACGTGGCGGGCGCGGCCACACCCGAACGACTTCGACCTCATCGT
AGAGACGTACGATGCTCAGGCCTTTGTTAGCGACGAAGCGGACGTGGCGG
GCGCGGCCACACCCGAACGACTTCGACCTCATCGTAGAGACGTACGATGC
TCAGGTTATTCACCGTCTACCAGGTTTGGATCCGGCCCGTACGACGGTGG
GCGGCCTGAAAGAGGCCCTTGTCAAGTTATTCACCGTCTACCAGGTTTGG
ATCCGGCCCGTACGACGGTGGGCGGCCTGAAAGAGGCCCTTGTCAAGTGC
AACGAGATGGAGTTGTTCACCCCGGGGCAGCTGGCGCTACGCACGCAGGG
GGCCCTGCTGACGGACGACTCCGTACTCCTGAGCGCGACGGGCGTGTCGT
TTGGCTCTCGGGGGAGCCAGCTCCAAGACATTTTCCTCTACGTGCCGCAT
CTGATCAGCTAGGTGCAACGAGATGGAGTTGTTCACCCCGGGGCAGCTGG
CGCTACGCACGCAGGGGGCCCTGCTGACGGACGACTCCGTACTCCTGAGC
GCGACGGGCGTGTCGTTTGGCTCTCGGGGGAGCCAGCTCCAAGACATTTT
CCTCTACGTGCCGCATCTGATCAGCTAG
back to top