mRNA_C-linearis_contig11.1211.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1211.1 vs. uniprot
Match: A0A6H5KAS4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAS4_9PHAE) HSP 1 Score: 565 bits (1455), Expect = 1.390e-193 Identity = 299/384 (77.86%), Postives = 319/384 (83.07%), Query Frame = 2
Query: 254 KTTTAAVTAV-AVALGGTQHCGDAFLASAPVRSG--------TSAALRTRSWAAAPSNCPARRDGAAALSMISATFGEKINTDSIVLDKTAREGIQEQYPEACAKCPTFLDEVGHGETQTFTEEQLRKRLEVAHVFVNLANLVLLSRGKNILAEDFKYYSPGTGRLDRDRFLRLTKTLDVAFSTFRVYPTDFTAYKDGVVTYRRTFRAEHDGYLTVGDKTYPPSQTKVISDVDLCAVSFDDTGVIRSYAYGLMVEVVYAIEDLDAVAEIEAIKKRVVNQEAKMKSLEGQESSIAYSKCKSDIDTMGMDMDALLEKVNSAPNTEGLGGIPGLFAAVGAEFPKDLTNLEGTDAPGDIEGTRLASFSFPVEVKDYEAFDQEAFTEMK 1378
KT A TAV A LG T HC AFL SAPVRSG R+G LSM+SATFGEKINTD IV+DKTARE +QE YPEACAK P FLDE+GHGET+TFTEE+LRKRLEVAHVFV+LANLVLLSRGKN+LAEDFKYYSPGTGRLDRD FLRLTKTLDVAFSTFRV PT+ YKDG VTYRRTFRA HDGYLTVGDKTYPPSQTKVISDVDLCAVSFDD GV+RSYA GLMVEVV+AIED DAVAEIE IKKRVVNQ+AKMKSLEGQESSIAYSKCK+DID M +DM+ALLE+VNSAPNTEGLGGIPGLFAAVGAEFP+DL NLEGTDA GDIEG RLASFS+PVEVKDYEAFD +AFTEMK
Sbjct: 5 KTPAVAATAVLAAVLGSTHHCAQAFLVSAPVRSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXREGLTGLSMVSATFGEKINTDRIVIDKTAREAVQELYPEACAKHPRFLDEIGHGETRTFTEEELRKRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRDSFLRLTKTLDVAFSTFRVVPTELVVYKDGTVTYRRTFRAVHDGYLTVGDKTYPPSQTKVISDVDLCAVSFDDMGVVRSYADGLMVEVVHAIEDPDAVAEIEEIKKRVVNQQAKMKSLEGQESSIAYSKCKADIDVMKLDMEALLERVNSAPNTEGLGGIPGLFAAVGAEFPEDLKNLEGTDAEGDIEGMRLASFSYPVEVKDYEAFDTDAFTEMK 388
BLAST of mRNA_C-linearis_contig11.1211.1 vs. uniprot
Match: A0A835ZLQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLQ1_9STRA) HSP 1 Score: 209 bits (532), Expect = 6.140e-57 Identity = 119/276 (43.12%), Postives = 167/276 (60.51%), Query Frame = 2
Query: 518 QYPEACAKC---PTFLDEVGHGETQ-TFTEEQLRKRLEVAHVFVNLANLVLLSRGKNILAEDFKYYSPGTGRLDRDRFLRLTKTLDVAFSTFRVYPTDFTAYKDGVVTYRRTFRAEHDGYLTVGDKTYPPSQTKVISDVDLCAVSFDDTGVIRSYAYGLMVEVVYAIEDLDAVAEIEAIKKRVVNQEAKMKSLEGQESSIAYSKCKSDIDTMGMDMDALLEKVNSAPNTEGLGGIPGLFAAVGAEFPKDLTNLEGTDAPGDIEGTRLASFSFPVEV 1333
Q EA K P + HG + EE L++RL VA F +A L+LL RG+NI+A+DF Y+SP TG L+++ FL L +T D AF + +P FT YKDG+V+YR +R DG LT+GDK P+ ISDV+LC VSFD+ G++RSYA G++V+ +D + IEA++ +V + K++SL GQE +IAY K +I+ + ++ LLE+V+ NT GLGGI GLF AVG E+P D+ +L G + GT S P EV
Sbjct: 98 QESEALRKAQLPPAYTATATHGSAPASLDEESLKRRLMVAKTFARMAPLILLMRGENIIADDFMYFSPCTGTLNKEEFLGLLRTTDRAFPSMASFPQSFTVYKDGLVSYRTAYRTSFDGPLTIGDKELAPNGVTAISDVELCTVSFDEAGLMRSYACGVVVDKADEYKDPAVMDRIEALQTKVAGNKIKVESLAGQEHTIAYQKSMEEINHLETELTFLLEQVDVEANTGGLGGIAGLFFAVGLEWP-DVHSLLGKAPHKRVGGTMQGGISVPSEV 372
BLAST of mRNA_C-linearis_contig11.1211.1 vs. uniprot
Match: W7U8S2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8S2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.520e-13 Identity = 70/236 (29.66%), Postives = 109/236 (46.19%), Query Frame = 2
Query: 545 PTFLDEVGHGETQTFTEEQLRKRLEVAHVFVNLANLVLLSRGKNILAEDFKYYSPGTGRLDRDRFLRLTKTLDVAFSTFRVYPTDFTAYKDGVVTYRRTFRAEHDGYLTVGDKTYPPSQTKVISDVDLCAVSFDDTGVIRSYAYGLMVEVVY-AIEDLDAVAEIEAIKKRVVNQEAKMKSLEGQESSIAYSKCKSDIDTMGMDMDALLEKVNSAPNTEGLGGIPGLFAAVGAEFPK 1249
P FL + T T L + A F N+A +++SRG N+L+EDF YYS TG LDR +L L ++ A R + F DG V Y G L +G + S K ++C V+F++ G ++S + GL+VE E+L A + + KR+ + + K++ +S A K + DID ++A EK + G+ GL A+G P+
Sbjct: 87 PGFLSAIRPNSKSTDTGRALIR----AKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGHDIHEGSGLKYQGLKEVCVVAFNEDGQLQSLSAGLVVEEGSDEDEELVAAEALSGLLKRLESHKQKLEMTPTGKS--AREKIQQDIDNTQAKIEAF-EKDSETVKVAHEAGLGGLLGALGVCVPE 315
BLAST of mRNA_C-linearis_contig11.1211.1 vs. uniprot
Match: A0A4D9DH59_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DH59_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 5.680e-12 Identity = 61/204 (29.90%), Postives = 98/204 (48.04%), Query Frame = 2
Query: 641 LANLVLLSRGKNILAEDFKYYSPGTGRLDRDRFLRLTKTLDVAFSTFRVYPTDFTAYKDGVVTYRRTFRAEHDGYLTVGDKTYPPSQTKVISDVDLCAVSFDDTGVIRSYAYGLMVEVVYAI-EDLDAVAEIEAIKKRVVNQEAKMKSLEGQESSIAYSKCKSDIDTMGMDMDALLEKVNSAPNTEGLGGIPGLFAAVGAEFPK 1249
+A +++SRG N+L+EDF YYS TG LDR +L L ++ A R + F DG V Y G L +G + S K ++C V+F++ G ++S + GL+VE E+L A + + KR+ + + K++ +S A K + DID ++A EK + G+ GL A+G P+
Sbjct: 1 MAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGQDIHEGSGLKYQGLKEVCVVAFNEDGQLQSLSAGLVVEEGSDEGEELVAAEALSGLLKRLESHKQKLEMTPTGKS--AREKIQQDIDNTQAKIEAF-EKDSETVKVAHEAGLGGLLGALGVCVPE 201
BLAST of mRNA_C-linearis_contig11.1211.1 vs. uniprot
Match: A0A7S2SCC1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCC1_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.290e-9 Identity = 67/271 (24.72%), Postives = 112/271 (41.33%), Query Frame = 2
Query: 620 VAHVFVNLANLVLLSRGKNILAEDFKYYSPGTGRLDRDRFLRLTKTLDVAFSTF----------RVYPTDFTAYKDGVVTYRRTFRAEHDG------YLTVGDKT---YPPSQTKVISDVDLCAVSFDDTGVIRSYAYGLMVEVVYAIEDLDAVAEIEAIKKRVVNQEAKMKSL-----EGQESSIAYSKCKSDIDTMGMDMDALLEKVNSAPNTEGLGGIPGLFAAVGAEFPKDL----TNLEGT-----DAPGDIEGTRLASFSFPVEV 1333
+A + L+ +V+ +RG N+L++DF ++SP TG L++D+FLRL L F RV+PT GVVT + G +L G + P + ++ + AV+FDD G + GL + I I ++ + AK+K L E ES ++ ++ + ++ L E + +P G L A FP DL T ++G P ++ G R+ S P ++
Sbjct: 106 MARTWAMLSPIVITARGPNVLSDDFVFFSPSTGLLEKDKFLRLNARLATLCPDFFNKLERDGEERVHPT-------GVVTLNYQPKGSFQGAVSEWSWLAKGSEAADHQAPVKKPLLGHWEAMAVAFDDQGRVLRLVSGLHAHDAEPEARNMVQSTIRDINGQIEKKLAKLKGLRKAHEENAESHPSFQATMKEMTALEEELKVLNENSHQSPTAGSFDGFRALLHAFDVPFPDDLQQCQTAIQGALMDLESPPEEVHGLRIGGISVPYDM 369 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1211.1 >prot_C-linearis_contig11.1211.1 ID=prot_C-linearis_contig11.1211.1|Name=mRNA_C-linearis_contig11.1211.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=377bp MKTTTAAVTAVAVALGGTQHCGDAFLASAPVRSGTSAALRTRSWAAAPSNback to top mRNA from alignment at C-linearis_contig11:1030074..1045270- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1211.1 ID=mRNA_C-linearis_contig11.1211.1|Name=mRNA_C-linearis_contig11.1211.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15197bp|location=Sequence derived from alignment at C-linearis_contig11:1030074..1045270- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:1030074..1045270- >mRNA_C-linearis_contig11.1211.1 ID=mRNA_C-linearis_contig11.1211.1|Name=mRNA_C-linearis_contig11.1211.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at C-linearis_contig11:1030074..1045270- (Chordaria linearis ClinC8C monoicous)back to top |