mRNA_C-linearis_contig11.1193.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: D8LGF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF6_ECTSI) HSP 1 Score: 561 bits (1446), Expect = 3.570e-192 Identity = 344/622 (55.31%), Postives = 404/622 (64.95%), Query Frame = 1
Query: 1 MVRCRSRFGLLCLVRAVGSAGMPLAGFVRSMFEIHGADAEGYEDHSSLQVEGELEGAGNSILERDFVLNDELYAVFNTLGQEQYKIIQHQGLDSACWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTRCSPEDSDDRCVKELQNNNVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDRAEQSLSKQELVLEGQERASIQTQGIADGLXXXXXXXXXXXXXXXXELVSAMKEIEKQQESLLASLMATQAVAATQASSFSAELGSAKSELASYMQAIEEDRRVAKDQNLDLMKTIDFIHDCLDNASSAWARFQAFTYLILAANLCWVLTTAPPLRSARTALFALVAFGLMLEKSLCGN---GGLEGPVAVDWLVTGLK-ISPETLTVATWAKIFNQEKIRWLTFQAGAAILGHALVSHYLPFLELGRLVASLRGKCGFGMRNNDSQPGGQQQLRSLPGGGRGRGGXSNGSGADTGGKSVVRGRQNAGTRASPSPSINRVVGEESGSDGDESEHNYTSG--------DPDPLGVEEGEPNGGXXXXXXRGWVREDARADGLEGLTRQELQSLAKATNGAVRANSSTGDIMKGLRDLGVSANA 1830
MVR RSR LCL S+ MPLAGF++SMF + GADAEGYE+ + ++ + + RDF+L+D LY+VFNT+ Q+ I+Q +GLDSACWR AA+SI ADC TMAHARKQRLAV LSNCHLQD+GR C+P DSD+ CVK+L ++N AFQSYT +FHHVNAICHHL HT+WQEQTE LVRGLTASSLATFDRAEQSL KQE VL+GQE AS Q+QGIADGL ELVSAM+EIEKQ E+LLASL+ Q VAATQASS S EL +AKS+LASYM+AIEEDRR YLILAANLCWVLTTAPPLRSARTALFALVAFGL+LEKSLCG GGL+G VDWLV+GLK SP T ATWAK+F QEKIRWLTFQAGA IL H L S+YLP LELGRL +SL RN DS+ R GRGRG +G+ A +G R +AG + + + DG + N SG P P G NGG +G + RADGL+GL RQELQSLAK T+G VRAN ST +I++GLR+LG++ +A
Sbjct: 1 MVRYRSRLAALCLAPVASSSSMPLAGFMQSMFSLDGADAEGYEEENLTVGADDIGSDSHMTIRRDFLLDDALYSVFNTIATAQFDILQEKGLDSACWRQAAVSIDADCETMAHARKQRLAVQLSNCHLQDSGRKPIECTPRDSDESCVKKLGDDNAAFQSYTTFFHHVNAICHHLRHTVWQEQTEGLVRGLTASSLATFDRAEQSLEKQEQVLKGQELASAQSQGIADGLSETSTRLAGLSDSLSQELVSAMREIEKQ-ETLLASLLTRQDVAATQASSLSTELNNAKSDLASYMEAIEEDRR----------------------------------YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGGLDGLERVDWLVSGLKWASPGTFAAATWAKVFTQEKIRWLTFQAGAVILSHTLTSYYLPSLELGRLASSLLAAWK-NSRNGDSR---NDDHRV----GRGRGDRDDGTAARSG---HDHSRHHAGESFQHDGNQDDTTND----DGSVQDDNSNSGRLGAREPVTPGPGRAGNGSSNGGSRRASGQG----NTRADGLDGLKRQELQSLAKKTDGVVRANLSTLNIIRGLRELGITEDA 568
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: A0A6H5JDE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE7_9PHAE) HSP 1 Score: 224 bits (570), Expect = 1.180e-64 Identity = 155/310 (50.00%), Postives = 188/310 (60.65%), Query Frame = 1
Query: 1012 YLILAANLCWVLTTAPPLRSARTALFALVAFGLMLEKSLCGN---GGLEGPVAVDWLVTGLK-ISPETLTVATWAKI------FNQEKIRWLTFQAGAAILGHALVSHYLPFLELGRLVASL----------------------RGKCGFGMRNNDSQPGGQQQLRSLPGGGRGRGGXSNGSGADTGGKSVVRGRQNAGTRASPSPSINRVVGEESGSDGDESEHNYTSG-----DPDPLGVEEGEPNGGXXXXXXRGWVREDARADGLEGLTRQELQSLAKATNGAVRANSSTGDIMKGLRDLGVSANA 1830
YLILAANLCWVLTTAPPLRSARTALFALVAFGL+LEKSLCG GGL+G VDWL++GL+ SP T ATWAK+ F QEKIRWLTFQAGA ILGHAL S+YLP LELGRL +SL R + G G +D + G Q LR L G RG G NG+ A TG R R +AG + + + ++ GS D+ +++ G P P G NGG +G +ARADGL+GL RQELQSLAK T+G VRAN ST +I++GLR+LG++ +A
Sbjct: 4 YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGGLDGLERVDWLLSGLRWASPGTFAAATWAKVANRLKVFTQEKIRWLTFQAGAVILGHALTSYYLPSLELGRLASSLLAAWMKSRNGDNSRNDDHRGTSRSREGHGSATDDRRTDGLQLLRPLTVG-RGSGDRDNGTVARTG---HGRSRNHAGESFQHDGNQDDSINDD-GSVQDDIDNSGGLGARQPVTPGPGRAANGSGNGGSRRASGQG----NARADGLDGLKRQELQSLAKKTDGVVRANLSTLNIIRGLRELGITEDA 304
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: W7TTL6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTL6_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.090e-11 Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 1
Query: 280 SACWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTRCSPEDSDDR-CVKELQNNNVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDRAEQSLSKQELVLEGQERASIQTQGIAD 684
S CWR A + + C M KQR+A+ L++CHL++ GR RC + D R C+K +Q + A+ +YT F ++ C+ L WQ QTE L+ L SSL +S Q+ +L+ Q+ +++ + +AD
Sbjct: 90 STCWRQAMRLLASSCKDMDMPTKQRIALHLASCHLEEGGRQPVRCPEREKDVRNCLKRVQGD-AAWSTYTDLFLFADSYCYSLQTDAWQTQTELLINKLGQSSLQAVTLLGESAHVQDTLLKNQQESTLFQKDLAD 224
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: UPI001455CA97 (uncharacterized protein LOC117302736 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455CA97) HSP 1 Score: 76.3 bits (186), Expect = 7.960e-11 Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 1
Query: 238 GQEQYKIIQHQGLD---SACWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTRCSPEDSDDRCVKELQNNNVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDRAE--------------QSLSKQELVLEGQE 651
G+ Q K I+ G CW A I+ C + + +A+ +NCHL+ AG C P + C+++L+++ +AF +YT++F H +C L +W EQTE V L SS D+ E +SL +Q L+L+ +E
Sbjct: 45 GERQLKQIEQYGKHPRYGKCWTRALEQIQEGCKHLTDDEQSLMALGFTNCHLEKAGLRTYPCDPSQNIQDCLRQLKDDVIAFNAYTEFFTHTQDMCFFLQSQVWHEQTESTVSRLVLSSEEVADKMEATGQLQEEMKVKQEESLEQQHLILKNEE 199
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: A0A2G8KYD9_STIJA (Uncharacterized protein n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KYD9_STIJA) HSP 1 Score: 75.9 bits (185), Expect = 9.160e-11 Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 1
Query: 238 GQEQYKIIQHQGLD---SACWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTR-CSPEDSDDRCVKELQNNNVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDRAEQSLSKQELVLEGQ 648
GQ Q+ +I + + CW A + C + + R+A+ L+NCHL+ AG CS + S C+ +Q + AF +YT++F H IC L +W E+TE V L SS D+ E + + Q ++E Q
Sbjct: 31 GQSQFALINKESKNPRYGKCWTTALTKVTEGCKKLTDDEQSRMALALTNCHLEKAGFTTLYPCSEDQSTSSCLSPMQTDIAAFNAYTEFFTHSQNICFFLQSQVWHEKTEETVSKLAKSSEVVADQLEVTSNLQSQMMEKQ 171
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: F6VY59_CIOIN (Uncharacterized LOC100176859 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6VY59_CIOIN) HSP 1 Score: 72.0 bits (175), Expect = 1.530e-9 Identity = 68/312 (21.79%), Postives = 114/312 (36.54%), Query Frame = 1
Query: 286 CWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTRCSPEDSDDRCVKELQNNNVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDRAEQSLSKQELVLEGQERASIQTQGIADGLXXXXXXXXXXXXXXXXELVSAMKEIEKQQESLLASLMATQAVAATQASSFSAELGSAKSELASYMQAIEEDRRVAKDQNLDLMKTIDFIHDCLDNASSAWARFQAFTYLILAANLCWVLTTAPPLRSARTALFALVAFGLMLEKSLCGNGGLEGPVAVDWLVTGLKISPETLTVATW 1221
CW A +K C ++ ++R+A + CHLQ AGR C E C + +VAF +YT++F H IC HL +W E TE + L +S Q A+++T E+V + K QE LL + + + + + ++ EE + V K+Q + D + + F + + AA L +++T+ SAR LF L+ E+++ + D + + PET+ A W
Sbjct: 55 CWTDALQQLKDGCRNLSDEMQRRIAYAFARCHLQSAGRKIPVCEVEQEMSDCTSDAVLEDVAFNTYTEFFTHSQQICFHLQSQVWHEATENTISQLADNS-------------------AQVAATLETSS-----------------EIAKEMVVRQNDSLKNQEELLRNERLLRE--------------NMQRSVLDVQRSHEETKMVIKEQRALFAEVFDRVAALQKTVLGEFTSVYTFGFYVGAAFLAYIMTSTSRTGSARIWLFILITLNFATERAVVNYHLAPTSSSADSMYVENTVLPETVYDAMW 316
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: UPI001C05BD6F (uncharacterized protein LOC121651034 isoform X1 n=2 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05BD6F) HSP 1 Score: 67.8 bits (164), Expect = 2.680e-8 Identity = 43/130 (33.08%), Postives = 67/130 (51.54%), Query Frame = 1
Query: 286 CWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTRCSPEDSD-DRCVKELQNNNVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDRAEQSLSKQELVLEGQERASIQTQ 672
CW A + C M + RLA+ ++CHL +GR C PE S+ RC E+ + VAF +YT++F H ++ICH L WQ Q E + LT +S ++ + + ++E Q A++Q Q
Sbjct: 51 CWARALEQLVTRCRDMTSESQSRLALRFAHCHLLSSGRDFPSC-PEGSEVSRCTGEMDD--VAFNTYTEFFTHTHSICHFLQSEAWQNQAEISMCRLTETSAGVAEQLQSTRQMARDLMEAQ-NAALQAQ 176
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: UPI0005CBBCA3 (uncharacterized protein LOC101161666 isoform X2 n=1 Tax=Oryzias latipes TaxID=8090 RepID=UPI0005CBBCA3) HSP 1 Score: 64.3 bits (155), Expect = 2.810e-7 Identity = 42/130 (32.31%), Postives = 64/130 (49.23%), Query Frame = 1
Query: 286 CWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTRCSPEDSD-DRCVKELQNNNVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDRAEQSLSKQELVLEGQERASIQTQ 672
CW A + C M ++ +A+ ++CHL +GR C PE SD RC + VAF ++T++F H NAICH L WQ + E + LT +S + + + +LE Q A++Q Q
Sbjct: 52 CWARALKELGVRCKDMTSESQRLMALRFTHCHLSSSGRDFPAC-PEGSDVSRCTGGMDA--VAFNTFTEFFTHTNAICHFLQSEAWQNRAEDTMSKLTETSAGVAEELHSTRQMAKDLLEAQS-AALQAQ 177
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: A0A7S4F731_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F731_CHRCT) HSP 1 Score: 64.7 bits (156), Expect = 3.250e-7 Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1
Query: 271 GLDSACWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTRCSPEDSDDRCVKELQNN--NVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDR 603
G +++C A +K C M + RLAV L+NCHL+ +G CS + S C K + ++ ++A+ SYT +F H ++C +L +Q TE L+ L ++S DR
Sbjct: 69 GAETSCQAAAIERLKEGCKDMNDEEQSRLAVALTNCHLEKSGLQTYLCSEDMSLMECTKPMVDSPSSLAYTSYTHFFTHAESMCFYLQSKSFQRSTESLIGALQSTSHTALDR 181
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Match: H2MJL5_ORYLA (Uncharacterized LOC101161666 n=3 Tax=Oryzias latipes TaxID=8090 RepID=H2MJL5_ORYLA) HSP 1 Score: 64.3 bits (155), Expect = 3.260e-7 Identity = 42/130 (32.31%), Postives = 64/130 (49.23%), Query Frame = 1
Query: 286 CWRHAAISIKADCATMAHARKQRLAVLLSNCHLQDAGRAGTRCSPEDSD-DRCVKELQNNNVAFQSYTQYFHHVNAICHHLSHTIWQEQTERLVRGLTASSLATFDRAEQSLSKQELVLEGQERASIQTQ 672
CW A + C M ++ +A+ ++CHL +GR C PE SD RC + VAF ++T++F H NAICH L WQ + E + LT +S + + + +LE Q A++Q Q
Sbjct: 52 CWARALKELGVRCKDMTSESQRLMALRFTHCHLSSSGRDFPAC-PEGSDVSRCTGGMDA--VAFNTFTEFFTHTNAICHFLQSEAWQNRAEDTMSKLTETSAGVAEELHSTRQMAKDLLEAQS-AALQAQ 177 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1193.1 >prot_C-linearis_contig11.1193.1 ID=prot_C-linearis_contig11.1193.1|Name=mRNA_C-linearis_contig11.1193.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=611bp MVRCRSRFGLLCLVRAVGSAGMPLAGFVRSMFEIHGADAEGYEDHSSLQVback to top mRNA from alignment at C-linearis_contig11:801322..807048- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1193.1 ID=mRNA_C-linearis_contig11.1193.1|Name=mRNA_C-linearis_contig11.1193.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5727bp|location=Sequence derived from alignment at C-linearis_contig11:801322..807048- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:801322..807048- >mRNA_C-linearis_contig11.1193.1 ID=mRNA_C-linearis_contig11.1193.1|Name=mRNA_C-linearis_contig11.1193.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3666bp|location=Sequence derived from alignment at C-linearis_contig11:801322..807048- (Chordaria linearis ClinC8C monoicous)back to top |