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Homology
BLAST of mRNA_C-linearis_contig11.1183.1 vs. uniprot
Match: D8LGE4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE4_ECTSI) HSP 1 Score: 179 bits (453), Expect = 5.480e-49 Identity = 96/149 (64.43%), Postives = 125/149 (83.89%), Query Frame = 1
Query: 772 LVEESNLLRGGGHRLQGANIALSMRFDDTVKKLERRGDHEARKVLMGLAKEAKDLSGMLAARLARMSMVNRTVLELLQKSQDGKAALMMRRAAELLVKGLANAEEEVHSLKATVQQVEGQRDHYKALLAKTASEVTTSQAYAQMSRAIG 1218
LV+ES LR GHRLQG++I LS+RF+DT + LE +GD EAR ++ LAKE K L+ +LAA+LAR+SM+NRT++E+L+KS+DG+AALMMR+AAELLVKGLANAEEEV SLKA ++E QRDHYKALLA+T SE+ S+A+AQ+S A+G
Sbjct: 18 LVQESTDLRWEGHRLQGSHIELSLRFEDTTRTLESKGDREARAAMLRLAKEFKQLNDVLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLARTNSELDVSRAHAQISEALG 166
BLAST of mRNA_C-linearis_contig11.1183.1 vs. uniprot
Match: A0A6H5KZE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE5_9PHAE) HSP 1 Score: 176 bits (447), Expect = 2.310e-45 Identity = 97/149 (65.10%), Postives = 123/149 (82.55%), Query Frame = 1
Query: 772 LVEESNLLRGGGHRLQGANIALSMRFDDTVKKLERRGDHEARKVLMGLAKEAKDLSGMLAARLARMSMVNRTVLELLQKSQDGKAALMMRRAAELLVKGLANAEEEVHSLKATVQQVEGQRDHYKALLAKTASEVTTSQAYAQMSRAIG 1218
LV+ES LR GHRLQGA+I LS+RF+DT + LE +GD EAR ++ LAKE K L+ LAA+LAR+SM+NRT++E+L+KS+DG+AALMMR+AAELLVKGLANAEEEV SLKA ++E QRDHYKALLA T SE+ S+A+AQ+S A+G
Sbjct: 18 LVQESTDLRWEGHRLQGAHIELSLRFEDTTQTLESKGDREARAAMLRLAKEFKQLNDGLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLATTNSELDISRAHAQISEALG 166
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-16_003740.1 |
| Exons | 4 |
| Model size | 1986 |
| Cds size | 1290 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927434.542252-UTR-C-linearis_contig11:579400..580096 | 1622927434.542252-UTR-C-linearis_contig11:579400..580096 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 579401..580096 + |
| 1690879697.8031948-UTR-C-linearis_contig11:579400..580096 | 1690879697.8031948-UTR-C-linearis_contig11:579400..580096 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 579401..580096 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927434.5556445-CDS-C-linearis_contig11:580096..580099 | 1622927434.5556445-CDS-C-linearis_contig11:580096..580099 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 580097..580099 + |
| 1690879697.8146257-CDS-C-linearis_contig11:580096..580099 | 1690879697.8146257-CDS-C-linearis_contig11:580096..580099 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 580097..580099 + |
| 1622927434.569335-CDS-C-linearis_contig11:580561..580786 | 1622927434.569335-CDS-C-linearis_contig11:580561..580786 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 580562..580786 + |
| 1690879697.8247159-CDS-C-linearis_contig11:580561..580786 | 1690879697.8247159-CDS-C-linearis_contig11:580561..580786 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 580562..580786 + |
| 1622927434.5829303-CDS-C-linearis_contig11:582018..582159 | 1622927434.5829303-CDS-C-linearis_contig11:582018..582159 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 582019..582159 + |
| 1690879697.8330898-CDS-C-linearis_contig11:582018..582159 | 1690879697.8330898-CDS-C-linearis_contig11:582018..582159 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 582019..582159 + |
| 1622927434.5962334-CDS-C-linearis_contig11:582909..583830 | 1622927434.5962334-CDS-C-linearis_contig11:582909..583830 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 582910..583830 + |
| 1690879697.84138-CDS-C-linearis_contig11:582909..583830 | 1690879697.84138-CDS-C-linearis_contig11:582909..583830 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 582910..583830 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1183.1 >prot_C-linearis_contig11.1183.1 ID=prot_C-linearis_contig11.1183.1|Name=mRNA_C-linearis_contig11.1183.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=430bp
MASPQQQQQQQQQAEQGGEEQQPTDLVEESNLLRGGGHRLQGANIALSMR FDDTVKKLERRGDHEARKVLMGLAKEAKDLSGMLAARLARMSMVNRTVLE LLQKSQDGKAALMMRRAAELLVKGLANAEEEVHSLKATVQQVEGQRDHYK ALLAKTASEVTTSQAYAQMSRAIGQAGGGAGGGASAASGSSAPASSGGAS ADDGDIKRSASGSDISRGSSSSTGKGNGKGKGKAPARQAQQNRPVGAGGA AAGATTPASRSTGGSGSGSGDGSAAAAAAAAAEGGNQHGEAEKSKRGRGR TAAAAAAAPAAPAAGRGARISAPGPSGGGTAATGDAVAGTTPTALASKKR RRGTAASSAGSGDSGGGDVDFKPHREQPDSLIGEGDSDGDGEGGGGSDEV GIEGGEEAAGEGRSRRRRRGEAASSTGRGR back to topmRNA from alignment at C-linearis_contig11:579401..583830+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig11.1183.1 ID=mRNA_C-linearis_contig11.1183.1|Name=mRNA_C-linearis_contig11.1183.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4430bp|location=Sequence derived from alignment at C-linearis_contig11:579401..583830+ (Chordaria linearis ClinC8C monoicous) GTGGGCTAGTGGAGAGTTCAGCAGGCGTAGGTCGCCTACACTCAGCCCCG
GAAGGCAGCATGTAAGTACAGTAGTCATATGCAGAAGCTACAAACATCAC
TCCTGTTGTTGCCCAGCGGGGCAACTTGTAAACTGTAACTGCATGTAAAG
AGTAAACACGGCTTTGATTTTGTTTTCCATCATCCTCTCTGTCCCATCCA
AACTGCCGCCAGCCCCCAGCCCCCCACCGACGGCCTCGAGGGGATCAATG
GAGTGTCTTTGAGCTGCTTAGGTCGGGCATCGAGTTGGTACCATCAGCTG
GTGACATGGGAAACATGTTTTCACGTGCGGGCTTTCTGCGGCTAATTTGA
ACTTGGTTTGGTTTGGTTCGGTTTGGATTAGGTTGTAGGCTCCAAAAGAA
TGGCAGCGGGACGTTTTGATGTGCTGCTGTTGGCTGACCCACAAGCACGC
CCTAACCTCCACTGCACAAGCTTGGCGAACACTATGCCTGCCGCCGCATC
TTGGTTCCCCCTGAACTCCGTCTAATCTCCCGCACGTACACACACAAGGC
ACCTACCCTCCGGAAGGTTGTTTTCGAAGGAGCTAAATTAGCACCTTGAG
AGCGAGAGAGCAGGAGAGACTCAGGCCGCTGGAGACACATACCGTGGGCG
CTCGTGTGCTTGTGCGGGAGAGGAGTGTTCTCGACGTCCCGACGACATGG
TGAGACAGGCCCTCCTGCGGAAGCATTTTGTATCGTAGATGGCGTCTCAT
TCCGGCTCCCTGCTTGAAACGAGCGAGCAACACGAAGAGATAGAGATCCG
AACCCAGCCCAAACCAACCCCTTACCAAACCCCCACCAACCCTACCCGAC
TCTACACTCCAACTATACCTACATATTGACGAGGGTGGGAAGTGCTGAAC
CCTGCTCGCGATAAAAAGCATCAAAGGCATGCACCGCAGGAGGTAGGTGG
AGACATCCCATCCTGTGTGACCCCGGAAGATAGCCTATCTAGTTGTAGTG
AAGAGGAGGAAGCAGGCTACGAAAAAACATTTATGGGCGAGAAGAAAAAA
AACTTGTAGGGAAACCTGAACCTTTCTCTCTGAGTTTTCGTGTTCCTCTA
CACTAGCGCTCTCTCACATCACTGCTGCCGCTCACGCGTGTCTTATGTAC
CATGGTGGCAGGCCAGCCCGCAGCAGCAGCAGCAGCAGCAACAACAGGCG
GAGCAGGGCGGTGAGGAGCAACAACCCACGGACCTCGTGGAGGAGTCGAA
CTTGCTCCGGGGGGGCGGGCACCGCTTACAGGGAGCGAACATCGCGCTGA
GCATGCGATTCGACGACACCGTCAAAAAGCTAGAGAGAAGAGGGGACCAC
GAGGCTCGGAAGGTTTTGATGGGGCTTGCCAAGGAGGTATGTCGGGTAGC
ATACTACGTAGATGGTGTGGACGGAAATTGTGGGTCGCCGTGTTTTGCTT
CGATTTCCCCCCAGGGTGTAAACGAATTCAAATGAGACTTTCTGCGCAAT
GGCGAGGTTGCGATTGACGAGCGGTGGCGGTGCGCCCCTGGGAAAATGTC
TCGTCGAGACCTCTCCCAAGGTCAATACGTTCGTTGGTCGTCCTCTTGGG
TTGTGAAGGGAAAGTCGGCTTTATATTTCGTTTGCACCCAGGGGGGGAAA
TCAAAGCAACGTATCCTACTGCTGTACGATGTGTGAACGCTTTGGGGATT
TCTGTTGTCATAGATGTCGGAAGGACGGGGCAGAGAGCGCCAGACCTTAC
GCTTTTGCTTGGGCTTGCTTGCCAAAGAGGTAGGGATGGTACCTATCTAC
ACGGCATCATACACAGCAGTCCAGTGTTGTTGGACTTCGAGTTTCCAGGA
ATTACAAAAAATGAGCTTCTTTTTCAGCCAATGCGCCGCTGAGACCGCGT
TTTCTGGTGCGGAAAGCTTAAGAGCTGCAGCTCCTGTACTGGTCGAGGGC
GCGGCAGAAAAAAACGAGGCGAATCGATGCTCCAGTCGCGGGGTACAAGC
GACTTGGGGCTCCCAACCAGCAACTAAGTCTGGGTCTTGCAGAAAAAAAC
ACGCACTTACACTGAACTCCATCCCAGACGAGCCAAACCCCAAACCGCAG
GGGGTGCGATCTACGTAGATCTTGTGCTCATTCGCAGCTATTGTAGCGTC
GGTGGTGCGAATTTTAGACCCTGCATCGCTCTTCGAGCGTCAAATCAGAG
CTTGCCTTCCCCTTCCATCCAGGGACTCGTCGAGATCAGCAGCAGCAGTA
AACAGAAACACGTGTTATTTTGGTGGTGTCCTTCCTGCACCAACGGTTTT
CGTCATGAACGGATGTTCTGCACACCTGAGAGAGACCCTACGAGCACTCT
CGCCGTACTGCTGTAACGTGTAGTCTCCTCGTGGATGAAGAGCCTCGGTT
TCTGCGCTGATGTACCGTCCCAAAATCTTGCTGTGTGCCCGCAAGCTGGC
GCTCTGCTCTGTTTCTGTATACTTCACGTGTAGTTCAGAACAAATCTCGC
GTGTTTGCCAAGCTTGCGACGCTGAGAGCTTCGTTCGTGTCCTGCACAGA
TTGGCGTCTGAGCCTTTGTCCCCCCCCCCTCCAACTTTCATCGCGGATCC
CCGCCCAACTCAATCCAGGCCAAGGATCTTAGCGGCATGCTGGCGGCGCG
GCTCGCGCGGATGTCGATGGTCAACCGGACGGTGCTGGAGCTTCTGCAGA
AGAGCCAAGATGGCAAGGCTGCGCTGATGATGCGCAGAGCCGCCGAGCTC
CTCGTGAAGGTGTGCGATATGTTCACATGGTGAAATTGTTCTATTTTGGC
TCCGTGTTACTAGCCATGGAAGACTCTTTGGTGGCGTTCATCAGCTAAAA
CACCAACAAAAATAGGAGAGGAAATACAATACGGTGCCGCGTGTCGTTGA
AATCGAACTAAAAAGGGGGGCGACAAAAGCAAGAAGAATCGCAAAGCAGC
AGCCAAGGAAGGCAAAAAACAAAAAACAACAAATAAAACGGGCGGTTGGA
GGAAACCCTGTACATGTGGATACCAAAGCACGGGGAGGGGCAAAAGGAGC
ACTGTACTGCAGTACACTACGATAGCGAGTGCTTCAGACAAGACGCGTTG
GACAACCGCAATTCGACCCCCCCGCGCCCCCCCTTTTTTTGTACAATCGT
CAACGGTGTGTACGTCCAACCTGCGACAAATCCTTTCCAGGACAACTGCC
ATACATACATGAGACACGCTGACCCTTCCCTCGCCGGCCCCAGCTACAAC
AATGGTATCATGTACGCAGTGGTCGTTTTTCTGTCCGTTTCGAAAACGCT
CGTCTCCAGCGCAGAACACTTCGGCCCCACCTTTACAGGCAGGTCATGCG
GGTTCATTTCGCAAACGCCGAACGTGCTCCTCCTCCTCTCCGGACGTGCT
ATGGGTGCAGTGGGGGGGTGCAGCAACTAACCACCCCCGCCCACGCGCGT
GCGCGCACCCGATCACGCGACTGCTTTCCAATCCCGCTCCTGCTGTCGTG
TCATGTCAGGGTTTAGCAAACGCGGAGGAAGAGGTCCACTCCCTCAAGGC
CACCGTGCAGCAGGTGGAGGGGCAGCGCGACCACTACAAGGCGCTCCTCG
CCAAAACCGCTTCCGAGGTCACCACCTCCCAAGCGTACGCCCAGATGAGC
AGGGCGATCGGGCAGGCGGGGGGTGGCGCCGGCGGCGGCGCCTCGGCGGC
TTCGGGTTCGTCGGCCCCCGCTTCCTCTGGCGGCGCCAGCGCAGACGATG
GGGATATCAAGCGTTCCGCCAGCGGCAGCGACATCAGCAGGGGCAGCAGC
AGCAGCACCGGCAAGGGCAACGGAAAAGGAAAAGGAAAGGCTCCCGCCCG
CCAAGCGCAGCAAAACAGACCGGTCGGGGCTGGCGGGGCCGCGGCCGGGG
CCACTACACCTGCCTCTCGATCTACCGGCGGGAGCGGGAGCGGGAGCGGG
GATGGGTCGGCTGCTGCTGCTGCTGCTGCTGCGGCGGAGGGTGGCAACCA
GCACGGCGAAGCGGAAAAGAGCAAGAGAGGAAGAGGACGCACGGCGGCGG
CGGCAGCGGCAGCACCAGCAGCACCAGCGGCGGGAAGGGGGGCTCGGATA
AGCGCGCCAGGCCCCAGCGGCGGCGGCACCGCAGCTACCGGCGACGCCGT
GGCTGGTACCACCCCAACGGCCTTGGCATCCAAGAAGCGTCGGAGAGGGA
CTGCCGCGTCGAGCGCGGGAAGCGGCGATAGCGGTGGCGGCGACGTCGAC
TTCAAGCCGCATCGAGAGCAGCCCGATAGTCTTATCGGGGAAGGCGATAG
CGATGGCGATGGCGAAGGTGGAGGCGGCAGCGACGAGGTGGGGATAGAAG
GGGGCGAGGAAGCCGCCGGCGAGGGCCGCAGCCGACGGCGCAGAAGGGGC
GAAGCGGCGAGCAGCACGGGCAGAGGGAGA back to topCoding sequence (CDS) from alignment at C-linearis_contig11:579401..583830+ >mRNA_C-linearis_contig11.1183.1 ID=mRNA_C-linearis_contig11.1183.1|Name=mRNA_C-linearis_contig11.1183.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2580bp|location=Sequence derived from alignment at C-linearis_contig11:579401..583830+ (Chordaria linearis ClinC8C monoicous) ATGATGGCCAGCCCGCAGCAGCAGCAGCAGCAGCAACAACAGGCGGAGCA GGGCGGTGAGGAGCAACAACCCACGGACCTCGTGGAGGAGTCGAACTTGC TCCGGGGGGGCGGGCACCGCTTACAGGGAGCGAACATCGCGCTGAGCATG CGATTCGACGACACCGTCAAAAAGCTAGAGAGAAGAGGGGACCACGAGGC TCGGAAGGTTTTGATGGGGCTTGCCAAGGAGGCCAGCCCGCAGCAGCAGC AGCAGCAGCAACAACAGGCGGAGCAGGGCGGTGAGGAGCAACAACCCACG GACCTCGTGGAGGAGTCGAACTTGCTCCGGGGGGGCGGGCACCGCTTACA GGGAGCGAACATCGCGCTGAGCATGCGATTCGACGACACCGTCAAAAAGC TAGAGAGAAGAGGGGACCACGAGGCTCGGAAGGTTTTGATGGGGCTTGCC AAGGAGGCCAAGGATCTTAGCGGCATGCTGGCGGCGCGGCTCGCGCGGAT GTCGATGGTCAACCGGACGGTGCTGGAGCTTCTGCAGAAGAGCCAAGATG GCAAGGCTGCGCTGATGATGCGCAGAGCCGCCGAGCTCCTCGTGAAGGCC AAGGATCTTAGCGGCATGCTGGCGGCGCGGCTCGCGCGGATGTCGATGGT CAACCGGACGGTGCTGGAGCTTCTGCAGAAGAGCCAAGATGGCAAGGCTG CGCTGATGATGCGCAGAGCCGCCGAGCTCCTCGTGAAGGGTTTAGCAAAC GCGGAGGAAGAGGTCCACTCCCTCAAGGCCACCGTGCAGCAGGTGGAGGG GCAGCGCGACCACTACAAGGCGCTCCTCGCCAAAACCGCTTCCGAGGTCA CCACCTCCCAAGCGTACGCCCAGATGAGCAGGGCGATCGGGCAGGCGGGG GGTGGCGCCGGCGGCGGCGCCTCGGCGGCTTCGGGTTCGTCGGCCCCCGC TTCCTCTGGCGGCGCCAGCGCAGACGATGGGGATATCAAGCGTTCCGCCA GCGGCAGCGACATCAGCAGGGGCAGCAGCAGCAGCACCGGCAAGGGCAAC GGAAAAGGAAAAGGAAAGGCTCCCGCCCGCCAAGCGCAGCAAAACAGACC GGTCGGGGCTGGCGGGGCCGCGGCCGGGGCCACTACACCTGCCTCTCGAT CTACCGGCGGGAGCGGGAGCGGGAGCGGGGATGGGTCGGCTGCTGCTGCT GCTGCTGCTGCGGCGGAGGGTGGCAACCAGCACGGCGAAGCGGAAAAGAG CAAGAGAGGAAGAGGACGCACGGCGGCGGCGGCAGCGGCAGCACCAGCAG CACCAGCGGCGGGAAGGGGGGCTCGGATAAGCGCGCCAGGCCCCAGCGGC GGCGGCACCGCAGCTACCGGCGACGCCGTGGCTGGTACCACCCCAACGGC CTTGGCATCCAAGAAGCGTCGGAGAGGGACTGCCGCGTCGAGCGCGGGAA GCGGCGATAGCGGTGGCGGCGACGTCGACTTCAAGCCGCATCGAGAGCAG CCCGATAGTCTTATCGGGGAAGGCGATAGCGATGGCGATGGCGAAGGTGG AGGCGGCAGCGACGAGGTGGGGATAGAAGGGGGCGAGGAAGCCGCCGGCG AGGGCCGCAGCCGACGGCGCAGAAGGGGCGAAGCGGCGAGCAGCACGGGC AGAGGGAGAGGTTTAGCAAACGCGGAGGAAGAGGTCCACTCCCTCAAGGC CACCGTGCAGCAGGTGGAGGGGCAGCGCGACCACTACAAGGCGCTCCTCG CCAAAACCGCTTCCGAGGTCACCACCTCCCAAGCGTACGCCCAGATGAGC AGGGCGATCGGGCAGGCGGGGGGTGGCGCCGGCGGCGGCGCCTCGGCGGC TTCGGGTTCGTCGGCCCCCGCTTCCTCTGGCGGCGCCAGCGCAGACGATG GGGATATCAAGCGTTCCGCCAGCGGCAGCGACATCAGCAGGGGCAGCAGC AGCAGCACCGGCAAGGGCAACGGAAAAGGAAAAGGAAAGGCTCCCGCCCG CCAAGCGCAGCAAAACAGACCGGTCGGGGCTGGCGGGGCCGCGGCCGGGG CCACTACACCTGCCTCTCGATCTACCGGCGGGAGCGGGAGCGGGAGCGGG GATGGGTCGGCTGCTGCTGCTGCTGCTGCTGCGGCGGAGGGTGGCAACCA GCACGGCGAAGCGGAAAAGAGCAAGAGAGGAAGAGGACGCACGGCGGCGG CGGCAGCGGCAGCACCAGCAGCACCAGCGGCGGGAAGGGGGGCTCGGATA AGCGCGCCAGGCCCCAGCGGCGGCGGCACCGCAGCTACCGGCGACGCCGT GGCTGGTACCACCCCAACGGCCTTGGCATCCAAGAAGCGTCGGAGAGGGA CTGCCGCGTCGAGCGCGGGAAGCGGCGATAGCGGTGGCGGCGACGTCGAC TTCAAGCCGCATCGAGAGCAGCCCGATAGTCTTATCGGGGAAGGCGATAG CGATGGCGATGGCGAAGGTGGAGGCGGCAGCGACGAGGTGGGGATAGAAG GGGGCGAGGAAGCCGCCGGCGAGGGCCGCAGCCGACGGCGCAGAAGGGGC GAAGCGGCGAGCAGCACGGGCAGAGGGAGA back to top
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