mRNA_C-linearis_contig11.1182.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1182.1
Unique NamemRNA_C-linearis_contig11.1182.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A6H5L0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C0_9PHAE)

HSP 1 Score: 424 bits (1091), Expect = 1.800e-139
Identity = 268/446 (60.09%), Postives = 302/446 (67.71%), Query Frame = 1 
Query:   88 RRRRARPTCS----RQKVILCACLGLGARSMIPTAEAWVPAAT--LLQGRGTSASTIDDXXXXXXXXXNAAIS-HRPVFATNKGRWGHQXXXXXXXXXXXVGKTFXXXXXXXXXXXXXXXGVAAPTAAASGTAVSF--SSRESAWRGRPVADALAVGSAGRRGGVGVRMSMAEEERGDNN---NAVLGALAIAGFGAVYYVLHDHAAGAGGLGLGTATGAVSTYSASLESVVETAKASPSAATTAIQAFLASSVTKIEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDGGGMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEMEEIEP 1389
            RRRR+RP CS    RQKV+LCACLGLGA+S++P AEAWVPAA   L+Q +G  A                  S H P   +N  R G Q                                 A  ++ A G   +F  S+  S W G+ V  A               MSMAEE+ G  +   NA+LGA+A+AG GA+YY LHDH  G GG G          +SA++ES VETAKA  SA +TA+QAFL+SSVTK+EELGPLG +YFGLLYVLAEVLIIPAIPLT AAGFLFG AGGTAVVLTSATIAAAISFQLGRTLLR+ VEGLL+ENPKFRALD AIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDF EYMMGTL+GFFPGTLAYVYGGTLGK +TDGGG  LPWYGY AGA   A+LLKTVGEIAT A+EEMEE +P
Sbjct:    9 RRRRSRPACSWQSRRQKVMLCACLGLGAQSIVPAAEAWVPAAPALLVQQQGRVAPPPTKTMHVGVGARGGTFSYHHPSQGSN--RLGGQQQQRQHCRRLAF---------------------APISSQAWGIERTFGQSALSSRWTGQGVVVANXXXXXXXXXXXXXMMSMAEEDSGTKSQGFNAMLGAVALAGLGALYYGLHDHTLGGGGGG---------PFSATVESAVETAKAGHSAPSTAVQAFLSSSVTKVEELGPLGVVYFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLRQQVEGLLEENPKFRALDKAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFLEYMMGTLLGFFPGTLAYVYGGTLGKVVTDGGGTGLPWYGYVAGAALTAYLLKTVGEIATAAVEEMEEADP 422
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A835ZF34_9STRA (Snare associated Golgi protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF34_9STRA)

HSP 1 Score: 228 bits (581), Expect = 5.970e-67
Identity = 121/187 (64.71%), Postives = 150/187 (80.21%), Query Frame = 1 
Query:  820 IEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDGG-GMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEME 1377
            I+  GP+G LYFG LYV+AEVL IPA+PLT ++G+LFG+ GGT VV+ SATIAA ISF LGRT LR+ VE LL +N KF+A+D+AI +EGFK+ILLLRLSPIFPFA+SNYLYG+TSV F+EY+  +++GF PGT+AYVYGG    +L DGG G  LPWYGYA G V VA  +K VG+IAT A+ E+E
Sbjct:    2 IQSAGPMGYLYFGALYVIAEVLAIPALPLTASSGYLFGLVGGTTVVICSATIAAGISFLLGRTFLRKWVEELLGDNAKFKAIDSAIGREGFKIILLLRLSPIFPFAISNYLYGITSVPFWEYLGASMLGFLPGTIAYVYGGGQLGSLVDGGDGGGLPWYGYALGLVAVAATIKLVGDIATKAVAEIE 188
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A7S1FUG6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUG6_9STRA)

HSP 1 Score: 227 bits (579), Expect = 3.430e-66
Identity = 121/199 (60.80%), Postives = 151/199 (75.88%), Query Frame = 1 
Query:  790 QAFLASSVTKIEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDGGGMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEMEEIE 1386
            Q  L  +V +IE  G +G LYFG++Y +AE+L IPAIPLT +AG+LFGV  GTAVVL +A++AA++SF LGR  LR  VE +L++NP+F+A+D AI KEGFK++LLLRLSPIFPFALSNYLYGVTSV F+ Y  GT++GF PGTLAYVY G  GKALT   GMA PWY YA G    A  +K + +IAT  IE+ME +E
Sbjct:   25 QQLLTDAVVQIEAAGAMGYLYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGEFGKALTMDAGMAAPWYIYAGGLALGACGIKIIADIATRTIEDMEAME 223
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A7S1FUT1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUT1_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.280e-64
Identity = 121/199 (60.80%), Postives = 151/199 (75.88%), Query Frame = 1 
Query:  790 QAFLASSVTKIEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDGGGMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEMEEIE 1386
            Q  L  +V +IE  G +G LYFG++Y +AE+L IPAIPLT +AG+LFGV  GTAVVL +A++AA++SF LGR  LR  VE +L++NP+F+A+D AI KEGFK++LLLRLSPIFPFALSNYLYGVTSV F+ Y  GT++GF PGTLAYVY G  GKALT   GMA PWY YA G    A  +K + +IAT  IE+ME +E
Sbjct:  163 QQLLTDAVVQIEAAGAMGYLYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGEFGKALTMDAGMAAPWYIYAGGLALGACGIKIIADIATRTIEDMEAME 361
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A7S0CCP1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP1_9STRA)

HSP 1 Score: 217 bits (552), Expect = 9.780e-63
Identity = 113/195 (57.95%), Postives = 146/195 (74.87%), Query Frame = 1 
Query:  802 ASSVTKIEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDGGGMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEMEEIE 1386
            A +VT+I+++GP G  YFG +Y +AE+L IPAIPLT +AG+LFGV  GT +VL SA+IAA+ISF +GRTLLR  VEG+L E PK + LD AI+ +GFK++LL+R++PIFPFALSNYLYGVTSV F+ Y  GT++GF PGT AYVY G +GK LT G   A PWY YA G    +  LK  G+IA+  I+ +E+ E
Sbjct:    1 AETVTQIQDMGPSGVAYFGFIYTIAEILAIPAIPLTASAGYLFGVRDGTLIVLLSASIAASISFFIGRTLLRSYVEGILGEYPKLQKLDRAISSQGFKIMLLVRIAPIFPFALSNYLYGVTSVKFWPYFWGTMLGFAPGTFAYVYSGVVGKILTSGDDAAQPWYVYAGGLALFSGFLKIGGDIASDIIDNIEDEE 195
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: D8LGE5_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE5_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 3.060e-62
Identity = 183/327 (55.96%), Postives = 211/327 (64.53%), Query Frame = 1 
Query:   88 RRRRARPTCS----RQKVILCACLGLGARSMIPTAEAWVPAATLL--QGRGTSASTIDDXXXXXXXXXNAAISHRPVFATNKGRWGHQXXXXXXXXXXXVGKTFXXXXXXXXXXXXXXXGVAAPTAAASGTAVSF--SSRESAWRGRPVADA-LAVGSAGRRGGVGVRMSMAEEERGDNN---NAVLGALAIAGFGAVYYVLHDHAAGAGG----LGLGTATGA-VSTYSASLESVVETAKASPSAATTAIQAFLASSVTKIEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLR 1017
            RRRR+RPTCS    R+KV+LCACLGLGA+S++P AEAWVPAA  L  Q RG                    ++  P    + G     XXXXXXXXXXX     XXXXXXXX         A  ++ A G   +F  S+  S W G+ V  A                 SMAEE+ G  +   NA+LGA+A+AG GA+YY LHDH  G GG     GLGT TG   S Y+AS+ES VETAKA  SAA+TA+QAFL+SS+TK+EELGPLG +YFGLLYVLAEVLIIPAIPLT AAGFLFG AGGTAVVLTSATIAAAISFQLGRTLLR
Sbjct:    9 RRRRSRPTCSWQSRREKVMLCACLGLGAQSIVPAAEAWVPAAPALHVQQRGR-------------------VAQPPTKTMHVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRCRRLAFAPISSQAWGIERTFGQSALSSRWTGQGVVGANXXXXXXXXXXXXXXXXSMAEEDSGTESQGYNAMLGAVALAGLGALYYGLHDHTLGGGGGANLAGLGTDTGGPFSAYAASVESAVETAKAGHSAASTAVQAFLSSSITKVEELGPLGVVYFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLR 316
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A7S4I716_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I716_9STRA)

HSP 1 Score: 222 bits (565), Expect = 3.230e-62
Identity = 123/213 (57.75%), Postives = 154/213 (72.30%), Query Frame = 1 
Query:  763 SPSAATTAIQAF-------LASSVTKIEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDGGGMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEMEE 1380
            S S  T A+Q F       L + V  +E +GP G LYFG++Y +AE+L IPAIPLT +AG+LFGV  GTAVVL SA+IAAAISF +GRTLLR  VE +L++ PKF+ +D AI +EGFK++LLLRLSPIFPFALSNYLYG TS+ F+ Y  GT++GF PGT+AYVY G +GKALT     A PWY YA G   +A  LK V ++AT  IE ++E
Sbjct:  164 SSSGVTMAVQRFFSDPNASLEAVVKSVEAMGPSGFLYFGIIYTVAEILAIPAIPLTASAGYLFGVTEGTAVVLASASIAAAISFIIGRTLLRTYVESVLEDYPKFKKIDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSIGFWPYFFGTMLGFTPGTIAYVYTGEIGKALTLDSATAEPWYVYAGGMTLLAGCLKVVADVATGIIENLDE 376
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A7S2K1V4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1V4_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.260e-60
Identity = 113/170 (66.47%), Postives = 137/170 (80.59%), Query Frame = 1 
Query:  799 LASSVTKIEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDGGGMALPWYGYAAG 1308
            L + V+++E +G LG LYFG+ Y +AE+L IPA PLT +AG+LFG+ GGT +VL SA+IAA+ISF +GRT LR  VEGLL++ PKF+A+D AI KEGFK+ILLLRLSP+FPFALSNYLYGVTSV F EY  GTL+GF PGT+AYVY G +GKALT   G A PWY YAAG
Sbjct:  156 LENIVSQVETMGNLGFLYFGIFYTIAEILAIPAFPLTCSAGYLFGLQGGTTIVLLSASIAASISFLIGRTALRSYVEGLLEKYPKFKAMDKAIGKEGFKLILLLRLSPLFPFALSNYLYGVTSVRFVEYFWGTLLGFLPGTMAYVYSGDVGKALTLDSGNAQPWYVYAAG 325
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A448YYH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYH2_9STRA)

HSP 1 Score: 217 bits (553), Expect = 3.440e-60
Identity = 117/189 (61.90%), Postives = 141/189 (74.60%), Query Frame = 1 
Query:  823 EELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALT-DGGGMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEMEEIE 1386
            E +GPLG  YFG+ Y +AE+L IPAIPLT +AG+LFG   GTAVVL SA++AA +SF +GRT LRE VEGLL+ENP+F  LD AI +EGFK++LLLRLSPIFPFALSNYLYG TS++F  +  GTL+GF PGT+AYVY G +GKALT D GG A PWY Y  G    A  LK V + AT  + E+E  E
Sbjct:  206 ESMGPLGVAYFGVAYCIAEILAIPAIPLTASAGYLFGPVQGTAVVLLSASVAAGVSFWIGRTFLREYVEGLLEENPRFGKLDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSINFSAFFGGTLLGFAPGTIAYVYTGYVGKALTGDAGGDAYPWYVYGGGLALFAAFLKVVADEATRVVREIEAEE 394
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BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Match: A0A7R9WRQ5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRQ5_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.500e-59
Identity = 108/190 (56.84%), Postives = 142/190 (74.74%), Query Frame = 1 
Query:  811 VTKIEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSATIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDGGGMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEMEE 1380
            V  +  +GPLGA+YFG+ Y +AE+L IPAIPLT +AG+LFG   GT VVL SA+IAAAISF +GRTLLR+ VEG+L + PKF  +D AI KEGFK++ LLRLSP+FPFALSNYLYG +S++F  +  GTL+GF PGT+AYVY G +GKALT  G    PWY Y  G   ++ L+K + + AT  ++E+++
Sbjct:   77 VDAVASMGPLGAVYFGVAYTIAEILAIPAIPLTASAGYLFGPVQGTGVVLVSASIAAAISFLIGRTLLRDYVEGVLQDFPKFAKIDKAIGKEGFKLMFLLRLSPVFPFALSNYLYGASSINFSAFFWGTLLGFAPGTMAYVYTGYVGKALTTEGSEVYPWYFYVGGLALLSGLIKVLADTATRIVDELDD 266
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0C0_9PHAE1.800e-13960.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZF34_9STRA5.970e-6764.71Snare associated Golgi protein-domain-containing p... [more]
A0A7S1FUG6_9STRA3.430e-6660.80Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1FUT1_9STRA2.280e-6460.80Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S0CCP1_9STRA9.780e-6357.95Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
D8LGE5_ECTSI3.060e-6255.96Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectoc... [more]
A0A7S4I716_9STRA3.230e-6257.75Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2K1V4_9STRA2.260e-6066.47Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A448YYH2_9STRA3.440e-6061.90Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9WRQ5_9STRA1.500e-5956.84Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:574872..579184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue1.1e-53
Seed eggNOG ortholog159749.K0R4C6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.SNARE associated Golgi protein
EggNOG OGs2XF17@2836,COG0398@1,KOG3140@2759
Ec32 ortholog descriptionTransmembrane protein Tvp38/TMEM64-like
Ec32 orthologEc-16_003750.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size2121
Cds size1323
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927434.4228659-UTR-C-linearis_contig11:574871..5756001622927434.4228659-UTR-C-linearis_contig11:574871..575600Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 574872..575600 -
1690879697.733019-UTR-C-linearis_contig11:574871..5756001690879697.733019-UTR-C-linearis_contig11:574871..575600Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 574872..575600 -
1622927434.502099-UTR-C-linearis_contig11:579115..5791841622927434.502099-UTR-C-linearis_contig11:579115..579184Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 579116..579184 -
1690879697.793016-UTR-C-linearis_contig11:579115..5791841690879697.793016-UTR-C-linearis_contig11:579115..579184Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 579116..579184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927434.4371982-CDS-C-linearis_contig11:575600..5757471622927434.4371982-CDS-C-linearis_contig11:575600..575747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 575601..575747 -
1690879697.7467482-CDS-C-linearis_contig11:575600..5757471690879697.7467482-CDS-C-linearis_contig11:575600..575747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 575601..575747 -
1622927434.4500587-CDS-C-linearis_contig11:576119..5763481622927434.4500587-CDS-C-linearis_contig11:576119..576348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 576120..576348 -
1690879697.755502-CDS-C-linearis_contig11:576119..5763481690879697.755502-CDS-C-linearis_contig11:576119..576348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 576120..576348 -
1622927434.4650578-CDS-C-linearis_contig11:576805..5771681622927434.4650578-CDS-C-linearis_contig11:576805..577168Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 576806..577168 -
1690879697.7651377-CDS-C-linearis_contig11:576805..5771681690879697.7651377-CDS-C-linearis_contig11:576805..577168Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 576806..577168 -
1622927434.4773977-CDS-C-linearis_contig11:578009..5785361622927434.4773977-CDS-C-linearis_contig11:578009..578536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 578010..578536 -
1690879697.7736228-CDS-C-linearis_contig11:578009..5785361690879697.7736228-CDS-C-linearis_contig11:578009..578536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 578010..578536 -
1622927434.491324-CDS-C-linearis_contig11:579058..5791151622927434.491324-CDS-C-linearis_contig11:579058..579115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 579059..579115 -
1690879697.7821088-CDS-C-linearis_contig11:579058..5791151690879697.7821088-CDS-C-linearis_contig11:579058..579115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 579059..579115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1182.1prot_C-linearis_contig11.1182.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 575601..579115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1182.1

>prot_C-linearis_contig11.1182.1 ID=prot_C-linearis_contig11.1182.1|Name=mRNA_C-linearis_contig11.1182.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=441bp
MDLPPLRRRRARPTCSRQKVILCACLGLGARSMIPTAEAWVPAATLLQGR
GTSASTIDDTTRRGGGGGNAAISHRPVFATNKGRWGHQQQQQRRRRQQGV
GKTFAIAGGGGGGSGGGGWGVAAPTAAASGTAVSFSSRESAWRGRPVADA
LAVGSAGRRGGVGVRMSMAEEERGDNNNAVLGALAIAGFGAVYYVLHDHA
AGAGGLGLGTATGAVSTYSASLESVVETAKASPSAATTAIQAFLASSVTK
IEELGPLGALYFGLLYVLAEVLIIPAIPLTTAAGFLFGVAGGTAVVLTSA
TIAAAISFQLGRTLLREPVEGLLDENPKFRALDTAIAKEGFKVILLLRLS
PIFPFALSNYLYGVTSVDFFEYMMGTLIGFFPGTLAYVYGGTLGKALTDG
GGMALPWYGYAAGAVFVAFLLKTVGEIATTAIEEMEEIEP*
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mRNA from alignment at C-linearis_contig11:574872..579184-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1182.1 ID=mRNA_C-linearis_contig11.1182.1|Name=mRNA_C-linearis_contig11.1182.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4313bp|location=Sequence derived from alignment at C-linearis_contig11:574872..579184- (Chordaria linearis ClinC8C monoicous)
GCAGGGCAACCCTCTTGCGTGACGAAGCTCGATACCCAACGAGGGGACCT
TGAAACCGCACCACCAGCGATGGATCTTCCTCCCCTCCGAAGGCGACGCG
CGCGGCCCACGTGCTCCAGACAAAAGGTAAGAGCACGACCCCCCCCCTTT
TGTGGTCTTTTCCCAGAAAAACACGTACTTCCTGCATAAGTACACGTATT
TCGCGTCAGTCTGGCCTGTGTCTTCGACTCCTACACTAAACAAGCTGACG
TGCTCCGAATCGGCGATACCACGCTCGACCGTGCGATTCTTGAGTGACCC
TGTTCCGTTGCGGTGTGGTTGCTCACGCTTGTGAGCCACTTTTCAGGCGC
ACAATAGTAAGGCTGGTGATGATCTGTACGATGGCATCATCCTCCAAGCT
CGTCATGTTTCTTTGGAGGCATACCCAGGACCCGATTGCTCTCTTTCCCC
GTCGCTATATTTCCGCCAAGGCGTATGTAGGTTCGGCAGCGTCCGCGCAC
GCCTTCGGGTTACCGTAGTCTAGAACATTCAATGCCTCCGGGCTCTAGCG
AAAAACACCAGATGCGCACAGACCAAGCACACGCCAGGACCACAACCTTC
CTGCCATCCGCCATCTCCAATTATGCTCTCTTTTTTTGGTATACCTAGGT
GATCCTCTGCGCATGCCTCGGGCTCGGCGCGCGAAGCATGATCCCCACCG
CCGAAGCCTGGGTACCTGCTGCAACGCTCCTGCAAGGCCGAGGGACATCA
GCATCAACAATAGATGACACCACAAGGCGCGGGGGCGGAGGGGGGAACGC
AGCGATCTCCCACCGCCCCGTCTTTGCAACCAACAAGGGTAGATGGGGGC
ATCAGCAGCAGCAGCAGCGGCGGCGGCGGCAGCAGGGGGTGGGGAAAACG
TTTGCAATAGCTGGTGGTGGTGGTGGTGGCAGCGGCGGCGGCGGCTGGGG
TGTTGCCGCGCCAACAGCGGCGGCATCAGGCACGGCGGTTTCGTTTTCGT
CTCGCGAGTCGGCTTGGCGAGGCCGGCCGGTCGCTGACGCTCTCGCCGTC
GGGAGTGCCGGGCGGAGAGGGGGGGTGGGCGTAAGGATGTCGATGGCGGA
GGAGGAGCGGGGGGATAACAACAACGCCGTGCTGGGCGCGCTGGCTATCG
CCGGCTTCGGCGCGGTCTACTACGTGTGAGTGAGGGGCACCGTGAAGCAC
GTGGAGGGGTGCCGGATGCCCCCCTCCCGCCCACTACATACCACTCCCGT
AGAGCTGGTGGGCCCATCACGCTAGCGGATTGCGAACGACCCCTAAATTA
GCGCGCATTTCTGCATGCCTGCATGTCGAGAGAAACGAAATCAACAACTC
CAGAGTGTCAAAATGGCTCGGGTGGTGTATACTGGTACCTCTTTGCGCCG
TCACGACTCACACGACAGCAGCGTTGTTCGCCCTTTTGCCATAGAACGAC
CGCGTGTCTGTGCTTTCAAGAAGCTTTCAACCATGCATGCGTTTTTTTTG
CAGCACTCTTCGAGACAACACTACAGACCCGACGAAGATCTCTCTCTCTC
TCTCACACACACACACACACACACACACACACCTTTGGCGTTAGATTGTC
CTAGGGACAGCCACGACGTTGCCACAGGCCCCCATGTCGTTAGTGCGTTT
CGAGTGCGCCTGCACCACAGACAGCAGTCCCGACATGGCAGCCAGCACGC
TTGTGTTGGAAAAATTGATCTCGGTGGGCGTCCTGCTTAAGTGTAGTCTA
GTCTCGGAGAAGGCATACCACCTGTCGTGGTTCATCTGCCAACCCAACCT
TCGCAGAGTTCGTCCCATTACTGGCTGTGTATTCGCATGCTTCCCTGCCG
TAAACTTGCTACCCGCCACATCATGCCGCACCACCACACTGGCGGAGTTC
CTCGGCTTGTCAGCCAACTTTTTAATAACCTGTCCAATTTCTAACAATCT
GTCCCGTTTTTGGTTGCACCTTCCCCTGCCGTACCGTACCGTGCCCCCCC
ACCACCACCAACACAGGCTACATGACCACGCGGCCGGCGCAGGCGGGCTG
GGCCTCGGGACCGCCACGGGCGCCGTGTCCACCTACTCGGCCTCCTTGGA
AAGTGTCGTCGAGACCGCCAAGGCCAGCCCCAGCGCAGCCACGACCGCCA
TCCAGGCCTTCCTCGCCAGCAGCGTCACCAAGATCGAGGAGCTGGGGCCC
CTGGGCGCCCTCTACTTCGGCCTGCTGTACGTGCTGGCCGAGGTGCTCAT
CATCCCGGCCATCCCGCTCACGACGGCGGCCGGGTTTCTGTTCGGGGTGG
CCGGGGGCACCGCGGTGGTGCTGACCAGCGCGACCATCGCGGCGGCGATC
TCGTTCCAGCTCGGACGCACGTTGCTAAGGTGCGGTGTGCAACAGACAAG
AAGTATGTACGAACACACTGGTTGCCTTCGAATGATGCTATAATAGTTTA
TTATTCTTCGTTCCAGCCCGGATGTATGCATACCCAGAGGGTGGCGGTTG
TTCCAAGATGCCCACCGCCGAAAAAAAAAACGAAGATTGCTCATGACGTA
AGTTACGATTGTTTTGCTTTCGTTCAAAACGGTTGCGCGTAACCCTAAAC
GCTAAACGCGCATGGTGCTATTAATGTAGCACAACCAGCTCTATTTTCTG
AAAACCCCTACCCTTTTCACCGTTACACACACCCTTTTCCCCTTCCCCCA
ATAGCACCCCGAAAAATACCCCCGCGATACACGAAACGGAGTGAGGGAGC
CCCTCCCTGTTGTGACCCCCCCCCCTTGTCTCATCTCCTCTTCTCTTGAC
AAAAAAAAACACCCCCGATACACACAACTCACGCAGGGAGCCAGTGGAGG
GCCTCCTGGACGAGAACCCCAAGTTCCGCGCGCTGGACACGGCGATCGCG
AAGGAGGGCTTCAAGGTGATCTTGCTGCTGAGACTAAGCCCCATCTTCCC
TTTCGCCCTGAGCAACTACCTCTACGGGGTCACGTCGGTGGACTTCTTCG
AGTACATGATGGGCACCCTCATCGGCTTCTTTCCCGGGACGTTGGCCTAC
GTTTACGGGGGAACGGTGGGTGGTTGCTGCTGCTGTTCCCGCTGCCGGTC
TTGTGGTACTGCTGTGGTTTGATTGGTGATGCCTACGTGTACGGGGAGAA
CGGTGGTGGCTGCTGCTGCTCCTGCTGATGTTTTTGTAGTTTGATTTGGT
GGTGTGGAGGCGGCGGCGCAATCGCAGTGCTGTCGCCGCCGCCGCCGCCG
TTGTCGTTCGGGCTTGCTGCTGATTGTTGCAGTCGTCTAAGGGTTTTATT
AGTACGATCTGATCATGTTGCGCTCTGCGTCTCTCTGCGGGTCTTGCTCC
GATTCTTTTTTTTCTTTTTTTTCCGTCGTCCTGTTCGGTAGCCCTTTTAT
TTGCTTCAATCGTTTTCGTTGTTTAATTTTTCAACAGCTCGGCAAGGCCC
TGACGGACGGCGGAGGCATGGCCCTCCCCTGGTACGGCTACGCGGCCGGG
GCAGTGTTCGTGGCGTTCCTTCTCAAGACCGTGGGTGAGATCGCCACTAC
CGCCATCGAGGAGATGGAGGAAATTGAACCCTGAGGCGAGCTATGTACAG
CTGCGGCAAAGCCACGTCGGAGATGGAGGAAGCAGAGACAGACCCGCGCG
ACGACCACAAGCTGCAGCAACAGCCACAGCTACAGCTTTGCCACGACGGG
ATACCACCCGTTCCAATGAAGGAAAGGAGGCTCGCGTCACGCGTAAAATG
ATATTGGTACAGCGAGACAGCTGAGGGGTTAGGTTAAGGGGAGAGTTGGA
GATTGGGGACGAACGATGCGCGGTAATCTGGGTCACAAGCTTTTTGATTC
GGGGTTTTCTGGTTTAGGTTACAAGCTCGCAGGATTCATGATTCGAGAAC
ATCGAGAGTCTGCAAAGGGGTGCGCGAGAACGGAGGAGGGGCGGGAGGGG
CGGATCGATGCAGACGGCTGGGCTGTGGGGATGGTGGAGGTGGTAAACGA
ACCTCGGGGATGGTGGGTGTGTGTTTTCTTCTTTTCGACGATAGAAAAGC
CTCCTGCTGTTACCGCGTATGTAGGTGGCTCGTGTGTTGTTGTCTACGAA
AGCCGTGCGTGCGGGAAACGCTGAAAGTGCATTTCTTTTTTCTGTTTGCG
TTCTCGTCTATGTACGTCCGGAAGTCGTGCGTGCGTGCGTGCGTGCGTTC
AAGTTGCCCGTTCGATATCCAGCAGTGGCGTGTTCAAGGGAAATCCTGTT
CATGTTCATCGCGGCCCTTCATGAGAGCAAGCCGATAAATCGTGTATGTA
ATTCACCGGGTCG
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Coding sequence (CDS) from alignment at C-linearis_contig11:574872..579184-

>mRNA_C-linearis_contig11.1182.1 ID=mRNA_C-linearis_contig11.1182.1|Name=mRNA_C-linearis_contig11.1182.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2646bp|location=Sequence derived from alignment at C-linearis_contig11:574872..579184- (Chordaria linearis ClinC8C monoicous)
ATGGATCTTCCTCCCCTCCGAAGGCGACGCGCGCGGCCCACGTGCTCCAG
ACAAAAGATGGATCTTCCTCCCCTCCGAAGGCGACGCGCGCGGCCCACGT
GCTCCAGACAAAAGGTGATCCTCTGCGCATGCCTCGGGCTCGGCGCGCGA
AGCATGATCCCCACCGCCGAAGCCTGGGTACCTGCTGCAACGCTCCTGCA
AGGCCGAGGGACATCAGCATCAACAATAGATGACACCACAAGGCGCGGGG
GCGGAGGGGGGAACGCAGCGATCTCCCACCGCCCCGTCTTTGCAACCAAC
AAGGGTAGATGGGGGCATCAGCAGCAGCAGCAGCGGCGGCGGCGGCAGCA
GGGGGTGGGGAAAACGTTTGCAATAGCTGGTGGTGGTGGTGGTGGCAGCG
GCGGCGGCGGCTGGGGTGTTGCCGCGCCAACAGCGGCGGCATCAGGCACG
GCGGTTTCGTTTTCGTCTCGCGAGTCGGCTTGGCGAGGCCGGCCGGTCGC
TGACGCTCTCGCCGTCGGGAGTGCCGGGCGGAGAGGGGGGGTGGGCGTAA
GGATGTCGATGGCGGAGGAGGAGCGGGGGGATAACAACAACGCCGTGCTG
GGCGCGCTGGCTATCGCCGGCTTCGGCGCGGTCTACTACGTGTGATCCTC
TGCGCATGCCTCGGGCTCGGCGCGCGAAGCATGATCCCCACCGCCGAAGC
CTGGGTACCTGCTGCAACGCTCCTGCAAGGCCGAGGGACATCAGCATCAA
CAATAGATGACACCACAAGGCGCGGGGGCGGAGGGGGGAACGCAGCGATC
TCCCACCGCCCCGTCTTTGCAACCAACAAGGGTAGATGGGGGCATCAGCA
GCAGCAGCAGCGGCGGCGGCGGCAGCAGGGGGTGGGGAAAACGTTTGCAA
TAGCTGGTGGTGGTGGTGGTGGCAGCGGCGGCGGCGGCTGGGGTGTTGCC
GCGCCAACAGCGGCGGCATCAGGCACGGCGGTTTCGTTTTCGTCTCGCGA
GTCGGCTTGGCGAGGCCGGCCGGTCGCTGACGCTCTCGCCGTCGGGAGTG
CCGGGCGGAGAGGGGGGGTGGGCGTAAGGATGTCGATGGCGGAGGAGGAG
CGGGGGGATAACAACAACGCCGTGCTGGGCGCGCTGGCTATCGCCGGCTT
CGGCGCGGTCTACTACGTGCTACATGACCACGCGGCCGGCGCAGGCGGGC
TGGGCCTCGGGACCGCCACGGGCGCCGTGTCCACCTACTCGGCCTCCTTG
GAAAGTGTCGTCGAGACCGCCAAGGCCAGCCCCAGCGCAGCCACGACCGC
CATCCAGGCCTTCCTCGCCAGCAGCGTCACCAAGATCGAGGAGCTGGGGC
CCCTGGGCGCCCTCTACTTCGGCCTGCTGTACGTGCTGGCCGAGGTGCTC
ATCATCCCGGCCATCCCGCTCACGACGGCGGCCGGGTTTCTGTTCGGGGT
GGCCGGGGGCACCGCGGTGGTGCTGACCAGCGCGACCATCGCGGCGGCGA
TCTCGTTCCAGCTCGGACGCACGTTGCTAAGGCTACATGACCACGCGGCC
GGCGCAGGCGGGCTGGGCCTCGGGACCGCCACGGGCGCCGTGTCCACCTA
CTCGGCCTCCTTGGAAAGTGTCGTCGAGACCGCCAAGGCCAGCCCCAGCG
CAGCCACGACCGCCATCCAGGCCTTCCTCGCCAGCAGCGTCACCAAGATC
GAGGAGCTGGGGCCCCTGGGCGCCCTCTACTTCGGCCTGCTGTACGTGCT
GGCCGAGGTGCTCATCATCCCGGCCATCCCGCTCACGACGGCGGCCGGGT
TTCTGTTCGGGGTGGCCGGGGGCACCGCGGTGGTGCTGACCAGCGCGACC
ATCGCGGCGGCGATCTCGTTCCAGCTCGGACGCACGTTGCTAAGGGAGCC
AGTGGAGGGCCTCCTGGACGAGAACCCCAAGTTCCGCGCGCTGGACACGG
CGATCGCGAAGGAGGGCTTCAAGGTGATCTTGCTGCTGAGACTAAGCCCC
ATCTTCCCTTTCGCCCTGAGCAACTACCTCTACGGGGTCACGTCGGTGGA
CTTCTTCGAGTACATGATGGGCACCCTCATCGGCTTCTTTCCCGGGACGT
TGGCCTACGTTTACGGGGGAACGGGAGCCAGTGGAGGGCCTCCTGGACGA
GAACCCCAAGTTCCGCGCGCTGGACACGGCGATCGCGAAGGAGGGCTTCA
AGGTGATCTTGCTGCTGAGACTAAGCCCCATCTTCCCTTTCGCCCTGAGC
AACTACCTCTACGGGGTCACGTCGGTGGACTTCTTCGAGTACATGATGGG
CACCCTCATCGGCTTCTTTCCCGGGACGTTGGCCTACGTTTACGGGGGAA
CGCTCGGCAAGGCCCTGACGGACGGCGGAGGCATGGCCCTCCCCTGGTAC
GGCTACGCGGCCGGGGCAGTGTTCGTGGCGTTCCTTCTCAAGACCGTGGG
TGAGATCGCCACTACCGCCATCGAGGAGATGGAGGAAATTGAACCCTGAC
TCGGCAAGGCCCTGACGGACGGCGGAGGCATGGCCCTCCCCTGGTACGGC
TACGCGGCCGGGGCAGTGTTCGTGGCGTTCCTTCTCAAGACCGTGGGTGA
GATCGCCACTACCGCCATCGAGGAGATGGAGGAAATTGAACCCTGA
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