mRNA_C-linearis_contig11.1180.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: D8LGE8_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGE8_ECTSI) HSP 1 Score: 447 bits (1151), Expect = 1.590e-150 Identity = 240/324 (74.07%), Postives = 264/324 (81.48%), Query Frame = 1
Query: 253 MEVGATVTHADCPSADGAGMPPHSWSQVDPSKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWYKASRKVDGVAKLAAAEALPEAEFSHPSVPSLLVVNVQLPTESPDLFKPGKVDGPTLHAVFYFTLKEETAKALRDLDSADPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSKAREIGA 1224
MEV ATV DCPSADGAGMPPHSWSQ+D KFMVR GPNYSK+KRK RNAGGS YE RAMDWY+ + KVDGVAKLAAAE LPEA+FSHPSVPSLLVVNVQLP ESP FK K+DGPTLHAVFY TL+EETAKAL+DL+SA+PSVRLLAEYFRRAESEP MR+RFKAIAVVNNQ+ INMARLI+PFNGKPVLITESG+L+RG R+P A XXXXXXXXXXX F ADEFLELD+HVR+WNFMARKGL+KLTPKF LINVSVAFL+EGR D+ELPEQ+LGCAT NCFD +KARE+ A
Sbjct: 1 MEVRATVPQVDCPSADGAGMPPHSWSQLDAEKFMVRHGPNYSKNKRKGRNAGGSFYEARAMDWYRGTGKVDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLPMESPQAFKGAKLDGPTLHAVFYLTLREETAKALQDLESAEPSVRLLAEYFRRAESEPEMRTRFKAIAVVNNQEVINMARLIAPFNGKPVLITESGTLMRGTRRPGAEGEGAPDSVARVESDSAGSNGXXXXXXXXXXX----------FGADEFLELDIHVRRWNFMARKGLSKLTPKFGLINVSVAFLVEGREDSELPEQILGCATVNCFDTTKAREVDA 314
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: A0A835ZBF7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF7_9STRA) HSP 1 Score: 172 bits (435), Expect = 2.740e-43 Identity = 113/334 (33.83%), Postives = 164/334 (49.10%), Query Frame = 1
Query: 235 ISFASNMEVGATVTHADCPSADGAGMPPHSWSQVDPSKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWYK-ASRKVDGVAKLAAAEALPEAEFSHPSVPSLLVVNVQLPTESPDLFKPGKVDGPTLHAVFYFTLKEETAKALRDLD-----SADPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSKAREI 1218
++ AS ++ A H + P H W+ S FMVR GPNY + K +A + YE+ A+DW+ A RK D V A P A HPS+PS+++VN QLP E+P + P +DGPTL VFY L E A+AL + P+++LL ++ AE++ RSRFKA+A +NN + + NG+P LIT+SG++ G + + +LELD +VR W F+AR+ L L P+ +++S+ F+IEGRADAELPEQ+LGC D +A E+
Sbjct: 168 VAGASLPQLAAAAAHGEHPLT-------HCWAPTKASSFMVRHGPNYKRRGLKVPSAP-ALYEVVAVDWFTCAGRKADNVGARVLLPAPPHAS-PHPSIPSIIIVNAQLPLEAPSMVAPA-LDGPTLQCVFYLALSAEAARALAXXXXXXXXALPPALQLLRDWCEGAEADAHTRSRFKAMARINNLHDAGLPGPVVQNNGRPTLITKSGTVTSGVGRVRGG------------------------------------------GSARYLELDCNVRHWCFLARRALRHLLPRAPRVHLSIGFVIEGRADAELPEQILGCCELGGVDPDRAVEL 449
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: A0A835Z0S6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S6_9STRA) HSP 1 Score: 162 bits (409), Expect = 2.220e-39 Identity = 175/426 (41.08%), Postives = 216/426 (50.70%), Query Frame = 1
Query: 253 MEVGATVTHADC---PSADGAGM----PPHSWSQVDPSKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWY-KASRKVDGVAKLAAAEALPEAEFSHPS----------------------------VPSLLVVNVQLPTESPDLFKPGKVDGPTLHAVFYFTLKEETAKAL-------------------------------RDLDSA-------------DPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSL--VRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSF----------------------AADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSKAREI 1218
+ GATV AD P+A G P HSWS + F+VR GPNY K K + + Y++ D + A KVDG+A A A P A HP VPSLLVVN+QLP E P +F P +DGPTLH VFYF L E A+AL RD S+ P++RLL E+ AE++ MR RFKAI VVNN + + LI+ +NGKPVL+T+SG+L V G S+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX +A LE+D +VR W ++ARKGL+ L P+F ++ VAF++EGRADAELPE+VL CA D +AR I
Sbjct: 72 ITAGATVPRADVDGHPAAATHGAQQRPPLHSWSPLRAGVFLVRHGPNYRKRGLKAASEA-ALYDMVGCDLFTSAHAKVDGIADRVALPAPPHAS-PHPLLSCHARPLHAPLPLPPPRRRAQVLSLLVVPSLLVVNIQLPLEHPTVFSPA-LDGPTLHCVFYFALSAEAARALAVXXXXXXXXXXXXXPHVRARRRAYHAQRLPRDNGSSGGGSGGAAETAHLSPALRLLCEFCAAAEADAEMRGRFKAIGVVNNVEEAGIPSLIAQYNGKPVLVTKSGTLRRVSGGGGGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAPHLEMDCNVRHWCYLARKGLHHLLPRFARTSLRVAFVLEGRADAELPERVLACAQLEGMDPRRARAI 494
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: A0A7S2KYG5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYG5_9STRA) HSP 1 Score: 156 bits (394), Expect = 2.650e-36 Identity = 100/318 (31.45%), Postives = 161/318 (50.63%), Query Frame = 1
Query: 265 ATVTHADCPSADGAGMPPHSWSQVDPSKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWYKASRKVDGVAKLAAAEALP---EAEFSHPSVPSLLVVNVQLPTESPDLFKPGKVDGPTLHAVFYFTLKEETAKALRDLDSADPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSKA 1209
++ TH+D + P ++ V+PS F +R GP+Y ++K+K +G + ++L MD + + + V +P + E H VP ++V+N +PT+ P LFKP K+DGP AV Y + ++T L+DL +A P+V+LL E+ RRAE + A RSR K + V ++ +A+ + ++ +NGKP LIT SG+L R + AA +LE++V++R WN +ARKG++ L P ++A IEGR + ELPE +LG FD ++A
Sbjct: 444 SSQTHSDSHEKQCYQVQPQTFWNVNPSAFKLRIGPDYKRNKQKA-PSGPALFDLITMDIFNSDAGLKNVGDAFHMPNIPGVTDVETGHRHVPPMIVMNTMIPTDEPSLFKP-KLDGPCCMAVLYLAISKQTLLELKDLKTASPAVKLLEEWCRRAEGDFAFRSRCKFMVVADDVEALGVPSFLTRYNGKPCLITSSGTLTR-----------------------------------------------HRDAASHYLEMNVNIRMWNALARKGIHSLKPYIPSATFNLAITIEGRDNDELPEVLLGGCRMMNFDFAQA 712
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: A0A6S8XZU4_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XZU4_9STRA) HSP 1 Score: 142 bits (357), Expect = 9.110e-32 Identity = 91/300 (30.33%), Postives = 148/300 (49.33%), Query Frame = 1
Query: 319 HSWSQVDPSKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWYKAS---RKVDGVAKLAAAEALPEAEFSHPSVPSLLVVNVQLPTESPDLFKPGKV-DGPTLHAVFYFTLKEETAKALRDLDSADPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSK 1206
+++ VD F +R GPNY K++ K+ ++ + Y+L ++D+ +A +K + + + + HP VP + V+N +P E +F GKV D P+++ V + E T KAL+D+D+A P+V+L AE+ R AE++ R+RFKA+ +V + + N+ I+ +NGKP L+T+SG+ +R + ++E V+V W F+ARKGL LTPKF + + F IE + D ELPE +LG FD K
Sbjct: 391 NAYWNVDARNFNLRVGPNYKKNRLKEPSSP-ALYDLISVDFIRADTTLKKASDAFTVPNIPGITDIDTGHPHVPPMFVINAWIPLEDHGVF--GKVTDAPSINCVMCLAIAEHTLKALKDIDNAPPAVKLFAEWCRIAETDDEFRARFKALGIVCDIEKTNIPSFIASYNGKPALVTKSGTFIRH---------------------------------------------------EHYIEFCVNVHMWGFLARKGLVTLTPKFAEFVLDIGFTIEAKRDHELPEVLLGGMRLIHFDPEK 636
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: W7U5D7_9STRA (EDR2_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5D7_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.570e-31 Identity = 104/322 (32.30%), Postives = 149/322 (46.27%), Query Frame = 1
Query: 310 MPPHSWSQVDPSKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWYKASRK-VDGVAKLAAAEALPEAEFSHPSVPSLLVVNVQLPTESPDLFKPGKVDGPTLHAVFYFTLKEETAKAL-------------------RDLDSADPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSKARE 1215
+P HSW S F VR +Y + K+K+ + + Y+L + D KAS V+ V +L E + A S P +P L +VN QLP P +F +GP A+F F LKE T L R+ S P+++LL EYFRRA +P +R R K IA N DA+++ IS +NGKPVLIT+SG L +G + ++E+D+ V ++ ++ARKG L +F + + +AFL+EGR + ELPEQ+LG A N D A E
Sbjct: 120 LPRHSWGHTSASSFRVRSR-HYKRAKKKEPSLE-AFYKLVSFDLIKASVGCVNHVGRLMDLEKVRPAR-SFPGLPPLFIVNTQLPDGEPAMFNASD-NGPGRSAIFVFALKESTVDMLEAHADSPSAAVRERKGKDHREAFSVPPALQLLQEYFRRAPHDPDVRGRLKVIASCANMDALHLPSFISNYNGKPVLITKSGRLHQGISSSNGEDLL-------------------------------------------YIEMDICVHRFAYVARKGFRYLQKRFSKMILDIAFLVEGREEDELPEQILGAARLNNVDYEAAVE 394
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: A0A7S2W974_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W974_9STRA) HSP 1 Score: 135 bits (341), Expect = 4.650e-31 Identity = 93/288 (32.29%), Postives = 142/288 (49.31%), Query Frame = 1
Query: 319 HSWSQVDPSKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWYKASRKVDGVAKLAAAEALPEAEFSHP---SVPSLLVVNVQLPTESPDLFKPGKVDGPTLHAVFYFTLKEETAKALRDLDSADPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLG 1173
H+W D +F +R GPNY K+ RK+ +G EL +D +K+S V + + ALPE P +VP + VV+ LP E+P + G +GPTL+AVFYF L+EET +AL L++A +V+LL + R A ++P++ +RFK I ++ N + + M ++ +NGKPVLI ++ G+ + + + V+VR W +AR GL+ L ++ V F IEGRAD ELPE +LG
Sbjct: 80 HAWEPGDHQRFRLRVGPNYKKYGRKE-PSGPVLLELLEVDLFKSSALVHNLGEFI---ALPEPRVPVPEGSAVPPIFVVHGSLPFEAPSML--GNSNGPTLNAVFYFGLREETQQALASLETAPKAVQLLETFCRSAHADPSVFNRFKCIGMLRNYEEVGMPSIMKGYNGKPVLIRNRSAVKGGSGVMDQQ--------------------------------------------QDSIIMHVNVRLWPLLARTGLHTLFGASAKCDLDVGFTIEGRADDELPEVLLG 317
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: A0A6T8K6G2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8K6G2_9STRA) HSP 1 Score: 125 bits (314), Expect = 7.690e-29 Identity = 88/292 (30.14%), Postives = 141/292 (48.29%), Query Frame = 1
Query: 373 YSKHKRKDRNAGGSCYELRAMDWYKASR-------------KVDGVAKLAAAEALPEAEFSHPSVPSLLVVNVQLPTESPDLFKPGKV-DGPTLHAVFYFTLKEETAKALRDLDSADPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSK 1206
YS++K K R + + ++L A D ++S +DGV K+ + + VPSL+V+N +PTE P +F GK DG T + Y + + T L+D++ A P+V+LL E+ +++E++ +MRSR KA+ ++++ + ++ IS FNGKPVLIT+S + R ++EL V++ KW +M +KGL L PKF + +V F IEGR D ELPE +LG A N D+++
Sbjct: 1 YSRNKVK-RPSRPALFDLYASDMVRSSSMLNNVADDFQIPDNIDGVTKI---------DTGNVHVPSLIVLNFNIPTEEPSVF--GKAEDGETCVLILYLVIAKHTINQLKDMNKASPAVKLLVEWCKKSENDFSMRSRMKAMCLIDDVENSSLPGFISRFNGKPVLITKSSTFTR---------------------------------------------------FPNYIELQVNIHKWAYMPKKGLFSLQPKFPSLAFNVGFTIEGREDDELPEVLLGGARINKIDMNR 229
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: A0A7S4JEV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JEV7_9EUKA) HSP 1 Score: 121 bits (304), Expect = 6.490e-27 Identity = 93/297 (31.31%), Postives = 140/297 (47.14%), Query Frame = 1
Query: 343 SKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWYKASRKVDGVA-KLAAAEALPEAEFSHPSVPSLLVVNVQLPTESPDLFKPGKVDGPTLHAVFYFTLKEETAKALRDLDSADPS--VRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSKAREIGA 1224
S F VR GPNY K+ +K +A S YEL ++D + + +A ++ LP+A +P +L+V VQ+P E+P LF + G L A F F L++E L + SA PS V+LLA Y+ RA S+ M+ FK I N DA+ + + FNGKPV+I +SG + G R +LE D+ V +W+ A++G++ L P++ I+ + F+++G D ELPE +LG A DVS E+ A
Sbjct: 54 SSFHVRIGPNYPKNGQKAPSAD-SLYELFSVDLFTSRECAFHLAERIKLPPPLPDAPGLQ--LPQVLLVTVQVPQEAPGLFSGSQDKGSALTAAFTFHLRKEV---LANAASAAPSAAVQLLARYYARATSDQEMKKTFKMIGRARNYDALGLPGWMKRFNGKPVIIHQSGEVYAGER-----------------------------------------------GGVRYLEEDILVGRWSLWAKQGVHTLMPRYPEIDAEIGFVLQGTEDDELPEVMLGAARLPFIDVSNFPELPA 297
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Match: A0A6S9LM18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LM18_HETAK) HSP 1 Score: 115 bits (287), Expect = 4.670e-24 Identity = 92/310 (29.68%), Postives = 138/310 (44.52%), Query Frame = 1
Query: 319 HSWSQVDPSKFMVRQGPNYSKHKRKDRNAGGSCYELRAMDWYKASRKVDGVAKLAAAEALPEA-EFSHPSVPSLLVVNVQLPT------ESPDLFKPGKVDGPTLHAVFYFTLKEETAKALRDLD------SADPSVRLLAEYFRRAESEPAMRSRFKAIAVVNNQDAINMARLISPFNGKPVLITESGSLVRGNRKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESNSFAADEFLELDVHVRKWNFMARKGLNKLTPKFRLINVSVAFLIEGRADAELPEQVLGCATANCFDVSKA 1209
HSW F VRQ P YS +K +G + YE +D ++ + +G P E HP VPS+ VVN Q+P SP P + DGP VF+F + E+T LR L + P++RL A + R A + R++FKA+A+V+N + +N+ L+ +NGKP LIT SG+L RG PS L++D++V ++ ++ARKGL+ + K + V F +E R + LPEQ+LG + +KA
Sbjct: 110 HSWEPSPADMFRVRQ-PGYSSTGQKA-PSGPAFYETLRVDTFRTPERREGRLVPRTLRPCPHTVESGHPDVPSVFVVNCQIPNIDGAVVHSPFNKNP-EYDGPCFQIVFHFGITEQTRDWLRQLQEEGAAAAVPPALRLWALWCREAPASFERRAQFKAMAMVDNPEELNLPGLVLRYNGKPALITNSGTLSRGG--PS------------------------------------------------LLQMDINVHRFAYLARKGLDMVKEKLEQGRIRVGFTVESREEEHLPEQMLGVCFFKKYKRNKA 366 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1180.1 >prot_C-linearis_contig11.1180.1 ID=prot_C-linearis_contig11.1180.1|Name=mRNA_C-linearis_contig11.1180.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp MEVGATVTHADCPSADGAGMPPHSWSQVDPSKFMVRQGPNYSKHKRKDRNback to top mRNA from alignment at C-linearis_contig11:558079..564501- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1180.1 ID=mRNA_C-linearis_contig11.1180.1|Name=mRNA_C-linearis_contig11.1180.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6423bp|location=Sequence derived from alignment at C-linearis_contig11:558079..564501- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:558079..564501- >mRNA_C-linearis_contig11.1180.1 ID=mRNA_C-linearis_contig11.1180.1|Name=mRNA_C-linearis_contig11.1180.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig11:558079..564501- (Chordaria linearis ClinC8C monoicous)back to top |