mRNA_C-linearis_contig11.1159.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1159.1
Unique NamemRNA_C-linearis_contig11.1159.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:362107..363036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog2880.D8LGG5
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927431.402832-CDS-C-linearis_contig11:362106..3622861622927431.402832-CDS-C-linearis_contig11:362106..362286Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 362107..362286 -
1690879695.8274395-CDS-C-linearis_contig11:362106..3622861690879695.8274395-CDS-C-linearis_contig11:362106..362286Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 362107..362286 -
1622927431.4140255-CDS-C-linearis_contig11:363000..3630361622927431.4140255-CDS-C-linearis_contig11:363000..363036Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 363001..363036 -
1690879695.8379776-CDS-C-linearis_contig11:363000..3630361690879695.8379776-CDS-C-linearis_contig11:363000..363036Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 363001..363036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1159.1prot_C-linearis_contig11.1159.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 362107..363036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1159.1

>prot_C-linearis_contig11.1159.1 ID=prot_C-linearis_contig11.1159.1|Name=mRNA_C-linearis_contig11.1159.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
EGALREVLDTYQILRKSEDDPRWEPMEDENMELVEDSDMIYLRARVHHFT
WFCCGRTSDVRYGIERWNHKDQ
back to top

mRNA from alignment at C-linearis_contig11:362107..363036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1159.1 ID=mRNA_C-linearis_contig11.1159.1|Name=mRNA_C-linearis_contig11.1159.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=930bp|location=Sequence derived from alignment at C-linearis_contig11:362107..363036- (Chordaria linearis ClinC8C monoicous)
GAAGGTGCCCTCCGAGAAGTTCTCGATACCTATCAGGTAAGACCCCGTTG
TAGGTGATAGGAATGTTTCTCGCTCTGGATCGGTTTGCTTCACAATAATC
TCTTCGTCGATGCCAAATGTGACGGTGTTATGGAGCTCTGAGACCTCAGG
CTCTAGAGAGGAAATAGCCTGCTATGGATATCTAGTCGCTCACAGGATCT
ACGTTGAAGATTAGCTGTCTGTCTAGGTGGTCTCCCGTATATGTTAGTTG
CTTGCCTTTCCCTTTAAGGCTTGGAGAGCCTTGGAAGGAGACCAGAACTA
AAACTACTCAAACACTGATCACGTGAGAACCCTTGCTCGAGGCTATTGGT
CGTAGCCCCATCACATTTGGTGTCGACGAAGAGACACTAAAGCTATTCGA
ACCCTGATTACGTGAGAATCCTTGCTCGAGTGATTGAAGATGAAACAACA
CGTTCGTACCAGGTGAACGAGACTTTCGTCTGATGTCCCACTTTCAAATA
AGACGTACGTATGTGACGTATTTTCAACACAACGAACCTCGCCGGCCGCC
CCGAATCGCAAAATTGCAACCAAACGTTGTTGTCGCCACACCCAAACGAA
TCGTTCACGTATTGACTGATTCAAACGTGGGCTTCATGTGTGTTCGCGAA
AGTGGCCGCAGCGGCGGCAAATAACGTCCGTCACAGGCTAATGCTCGCTG
TAACACCATCTTTTTTGGTGTGTCTCGGCCTGGCCGGCACGTTCTCGCAG
ATTCTGCGCAAGAGTGAGGATGACCCCAGGTGGGAACCAATGGAGGACGA
GAATATGGAACTGGTGGAAGATTCCGATATGATCTACCTGAGGGCTCGTG
TCCACCACTTCACCTGGTTCTGCTGTGGCAGGACGAGCGACGTACGGTAC
GGCATCGAACGTTGGAATCATAAGGACCAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:362107..363036-

>mRNA_C-linearis_contig11.1159.1 ID=mRNA_C-linearis_contig11.1159.1|Name=mRNA_C-linearis_contig11.1159.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at C-linearis_contig11:362107..363036- (Chordaria linearis ClinC8C monoicous)
GAAGGTGCCCTCCGAGAAGTTCTCGATACCTATCAGGAAGGTGCCCTCCG
AGAAGTTCTCGATACCTATCAGATTCTGCGCAAGAGTGAGGATGACCCCA
GGTGGGAACCAATGGAGGACGAGAATATGGAACTGGTGGAAGATTCCGAT
ATGATCTACCTGAGGGCTCGTGTCCACCACTTCACCTGGTTCTGCTGTGG
CAGGACGAGCGACGTACGGTACGGCATCGAACGTTGGAATCATAAGGACC
AGATTCTGCGCAAGAGTGAGGATGACCCCAGGTGGGAACCAATGGAGGAC
GAGAATATGGAACTGGTGGAAGATTCCGATATGATCTACCTGAGGGCTCG
TGTCCACCACTTCACCTGGTTCTGCTGTGGCAGGACGAGCGACGTACGGT
ACGGCATCGAACGTTGGAATCATAAGGACCAG
back to top