mRNA_C-linearis_contig11.1153.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1153.1
Unique NamemRNA_C-linearis_contig11.1153.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1153.1 vs. uniprot
Match: D8LSV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV9_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.810e-39
Identity = 79/130 (60.77%), Postives = 90/130 (69.23%), Query Frame = 2 
Query:  227 NVELLEDEMPRTTC-GFSAGSVAQQQAATGHGGVASAVGGLCPHATAALEHIAMGTAMPAKEVKGDGWDVAAAKEAVEEKRREGHLSVVQYNAIVAMMEEAAARGVWPVYETETDCFVVRDGRTRTTEHD 613
            N E       RT C G  AG VAQQQ A  HGGVASA+GGLC HA AALEH+   T   A+EVKGDGWD  AAKE V   + +GHLSVV++ AI+ M+E A   GVWPVYETE + FVVRD RTRT+EHD
Sbjct:  129 NPERQTSSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGWDWDAAKEHVATAKSDGHLSVVEHTAIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHD 258
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BLAST of mRNA_C-linearis_contig11.1153.1 vs. uniprot
Match: D7FR12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR12_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.880e-38
Identity = 78/130 (60.00%), Postives = 89/130 (68.46%), Query Frame = 2 
Query:  227 NVELLEDEMPRTTC-GFSAGSVAQQQAATGHGGVASAVGGLCPHATAALEHIAMGTAMPAKEVKGDGWDVAAAKEAVEEKRREGHLSVVQYNAIVAMMEEAAARGVWPVYETETDCFVVRDGRTRTTEHD 613
            N E       RT C G  AG VAQQQ A  HGGVASA+GGLC HA AALEH+   T   A+EVKGDGWD  AAKE V   + +GHLSVV++  I+ M+E A   GVWPVYETE + FVVRD RTRT+EHD
Sbjct:   93 NPERQTSSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGWDWDAAKEHVATAKSDGHLSVVEHTVIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHD 222
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BLAST of mRNA_C-linearis_contig11.1153.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.740e-18
Identity = 60/132 (45.45%), Postives = 76/132 (57.58%), Query Frame = 2 
Query:  227 NVELLEDEMPRTTC-GFSAGSVAQQQAATGHGGVASAVGGLCPHATAALEHIAMGTAMPAKEVKGD--GWDVAAAKEAVEEKRREGHLSVVQYNAIVAMMEEAAARGVWPVYETETDCFVVRDGRTRTTEHD 613
            N +       RT C G +AG V+QQ+    HGGVASAVGGLC HA  ALEH+A  T   A  V G     D AAAKE V   +   HL+  + N +++++E A   GVWPV E E   ++V D R+RTTE D
Sbjct:   78 NRQRKTSSCSRTECQGATAGFVSQQRTVGSHGGVASAVGGLCQHAALALEHMAAKTMKRATSVLGGVASTDYAAAKELVTAAKLGSHLTAEECNDVMSIVEGAERSGVWPVVEVERHQYMVLDMRSRTTELD 209
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSV9_ECTSI5.810e-3960.77Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FR12_ECTSI1.880e-3860.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPP3_9PHAE4.740e-1845.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:123009..123952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size615
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1153.1prot_C-linearis_contig11.1153.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 123009..123702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927431.2350137-CDS-C-linearis_contig11:123008..1233621622927431.2350137-CDS-C-linearis_contig11:123008..123362Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 123009..123362 -
1690879695.7266865-CDS-C-linearis_contig11:123008..1233621690879695.7266865-CDS-C-linearis_contig11:123008..123362Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 123009..123362 -
1622927431.2465465-CDS-C-linearis_contig11:123693..1237021622927431.2465465-CDS-C-linearis_contig11:123693..123702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 123694..123702 -
1690879695.7350934-CDS-C-linearis_contig11:123693..1237021690879695.7350934-CDS-C-linearis_contig11:123693..123702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 123694..123702 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927431.256754-UTR-C-linearis_contig11:123702..1239521622927431.256754-UTR-C-linearis_contig11:123702..123952Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 123703..123952 -
1690879695.7453237-UTR-C-linearis_contig11:123702..1239521690879695.7453237-UTR-C-linearis_contig11:123702..123952Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 123703..123952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1153.1

>prot_C-linearis_contig11.1153.1 ID=prot_C-linearis_contig11.1153.1|Name=mRNA_C-linearis_contig11.1153.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
MPRTTCGFSAGSVAQQQAATGHGGVASAVGGLCPHATAALEHIAMGTAMP
AKEVKGDGWDVAAAKEAVEEKRREGHLSVVQYNAIVAMMEEAAARGVWPV
YETETDCFVVRDGRTRTTEHD
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mRNA from alignment at C-linearis_contig11:123009..123952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1153.1 ID=mRNA_C-linearis_contig11.1153.1|Name=mRNA_C-linearis_contig11.1153.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=944bp|location=Sequence derived from alignment at C-linearis_contig11:123009..123952- (Chordaria linearis ClinC8C monoicous)
GGAGGGCGGGCGGCGGACGTGGAGGAGCACGGAATGGACCAGCACCAGGG
CGAGGACGCGGCAGGCTCTCCGTCCAGGGAGGCCGTGTAGGGGCGGCAAC
CCCGGCAAAGCAGAGGCAGAGGGTTTTCACGTTACCGCTTGGGGAGGGCG
ACCAAAGCACTACAGTTGCTGTGCGCATCGGGAATGCTGACAATTATGTG
GTGACCTCTGTGAACCCAGAACGAAGAACGTCGAGCTGCTCGAGGATGAA
ATGCCAAGGGTGAGGCTCCTAATGTTTTCCTGGATCATTGCCCGGTATAA
ACATTTGTTTGAAATATTTTTCCTCTGCTGGCATGTTTTCTGCGAGCTCT
GCTGGCGACGTGTTGACAACCCATTGCTTGCATGGCGTTAGGCTAGAGGC
GTGCGATGTCCTGCATTGACGAGCGCGAAGTGGGTAGTGTAGACCTCGGC
GCTCGACATTTGTCCATCAGTGATAACTCAAGATGCTTCGGGAGCGTCTT
TCACCCGATCCCTTTCACCGCAGCGATAAAATGCGTAACTGAAAACTTGT
TGTTCATATTTTGCTGGTTCCGCTGATCCCGATCCCGCAGACTACGTGCG
GGTTCAGTGCGGGTTCAGTAGCGCAGCAGCAAGCGGCGACGGGGCATGGT
GGGGTGGCGAGCGCCGTCGGAGGCCTGTGCCCGCACGCGACGGCGGCGTT
GGAGCACATTGCGATGGGGACGGCGATGCCCGCCAAAGAGGTCAAAGGTG
ACGGTTGGGACGTGGCCGCAGCGAAGGAGGCTGTGGAAGAAAAACGGCGG
GAAGGGCACTTGAGTGTTGTACAGTACAACGCGATCGTGGCTATGATGGA
AGAGGCTGCGGCTCGGGGGGTGTGGCCGGTGTACGAGACGGAAACCGACT
GTTTTGTGGTGCGCGACGGTCGGACTCGAACAACGGAGCACGAC
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Coding sequence (CDS) from alignment at C-linearis_contig11:123009..123952-

>mRNA_C-linearis_contig11.1153.1 ID=mRNA_C-linearis_contig11.1153.1|Name=mRNA_C-linearis_contig11.1153.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig11:123009..123952- (Chordaria linearis ClinC8C monoicous)
ATGCCAAGGATGCCAAGGACTACGTGCGGGTTCAGTGCGGGTTCAGTAGC
GCAGCAGCAAGCGGCGACGGGGCATGGTGGGGTGGCGAGCGCCGTCGGAG
GCCTGTGCCCGCACGCGACGGCGGCGTTGGAGCACATTGCGATGGGGACG
GCGATGCCCGCCAAAGAGGTCAAAGGTGACGGTTGGGACGTGGCCGCAGC
GAAGGAGGCTGTGGAAGAAAAACGGCGGGAAGGGCACTTGAGTGTTGTAC
AGTACAACGCGATCGTGGCTATGATGGAAGAGGCTGCGGCTCGGGGGGTG
TGGCCGGTGTACGAGACGGAAACCGACTGTTTTGTGGTGCGCGACGGTCG
GACTCGAACAACGGAGCACGACACTACGTGCGGGTTCAGTGCGGGTTCAG
TAGCGCAGCAGCAAGCGGCGACGGGGCATGGTGGGGTGGCGAGCGCCGTC
GGAGGCCTGTGCCCGCACGCGACGGCGGCGTTGGAGCACATTGCGATGGG
GACGGCGATGCCCGCCAAAGAGGTCAAAGGTGACGGTTGGGACGTGGCCG
CAGCGAAGGAGGCTGTGGAAGAAAAACGGCGGGAAGGGCACTTGAGTGTT
GTACAGTACAACGCGATCGTGGCTATGATGGAAGAGGCTGCGGCTCGGGG
GGTGTGGCCGGTGTACGAGACGGAAACCGACTGTTTTGTGGTGCGCGACG
GTCGGACTCGAACAACGGAGCACGAC
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