mRNA_C-linearis_contig109.1128.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig109.1128.1 vs. uniprot
Match: A0A6H5KB32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB32_9PHAE) HSP 1 Score: 609 bits (1570), Expect = 1.120e-196 Identity = 437/908 (48.13%), Postives = 504/908 (55.51%), Query Frame = 3
Query: 1317 DRAEG-EGPRLHAYQLVSSEPRLLLIRAEPDLSNRLRFLVDMLPGLRRGYWNGRLRRAAPLLAIDTVKLQERLEGLVEMFPDHVDLQ---------AVLNQAPLLLRHRTETVAAALANTERLIPGLRVDRLLRSAPYVLVQPLDVVEKRLSHLRKVLGLTPSPELEKMRIAIGPQTSS--------GSGAERGRD----------GR--GGGRAACVRTLARFANAFPQILTMEPHTVRAKIEGLEGLLPGMDGLAVVGSRPHLLGFSVRQNVSLKVSGLRALMKRERAGPEESRK--------GRHRRQRH----QASATQAGSDLAAAVTRCPSLLTLSSETAARKVEELQQALPPGLDASRAVVAKEPRVLALDMGDTVPRKLAGLTRALAAHAPRGGDGNEMVEAAA----------------AQVLRYYPNALRLDPATLAGKLEALHRAGLSSETVLAVVGGAPRCLSAAAGTLEQRVSTLRGAFPSASVDGMLGQAPGLLLNRVDPVARVEVLQELFPSLNPLRLVEGAPMLLALSESTLRAKSEAWRNVLEARVEQSWEQAIAEFPQLLCQGLGRAARVAFLLLP---------------------ADSSVVPAAAVVPAA-----IAPSASASDNGDDAVAAAT-VERAVAIAAG-------------------------TKTMSAATACREVCRRVADFERDHPAYPTFLDSLLIAARRRPAAGTARVAGAAGADRVVRERREGSPNSSAPNLTVERGVLLGGVALSHAGLRTLGGNQRQSSQPHAGPKAVTAIATAPGTQTAGGGGVPNRHTRMEAPTPPLANKGQQRQWPLPGAPSASPAPLSTPVEGDEVRIAVTSEKALGAAMTAAAKGPGGGEEAAAMLLLEGVQVRRNAGR 3710
DR +G EG RLHAYQLVSSEPRLLL+RAEP+LS RLRFL++MLP LR G W+ RLRRAAPLLAI++ LQ RLEGL ++FP DLQ A++NQ PLLLRHRTE V+ ALAN ERL+PGLR+DR+LRSAP +LVQPLDVVEKRL+ LR VL LTPSPE+E+MRI + P SS GSG G D GR GGGR A VR LARFAN FPQILTMEPHTVRAKIEGLE LLPGMDGLA+VGSRPHLLGF VR+NVSLKVS LR LM + P++ R G R R +A T A DL AAV RCPSLLTLSS T+ RKVE+LQ+ALP GL A R +VAKEPRV++LDM TVPRKLA L+ A A A GG AQ LRY PNALR DPATLA KLE L AGLS+ETV VVGGAPRCLSAAAGTLE RVS LR AFPS + +LG+AP LL +DPVA+ MLLALSE TLR K +AWR+++E RV+ WEQ +A+FPQLLCQG GRAARV FLLL + V A A+V A + + A D VAA V A A AAG +TMSAA ACREVCRRV+DFE DHP YP FLDSLL+AA ++ SS+P P + PLP ++P P S P G E R+AV SEKALGAAM A+GPGG ML+ +++ N+GR
Sbjct: 61 DREQGGEGARLHAYQLVSSEPRLLLLRAEPELSGRLRFLLEMLPSLR-GSWSARLRRAAPLLAIESSALQSRLEGLADLFPPDADLQVGAGLFIGGAIVNQTPLLLRHRTEKVSEALANIERLVPGLRMDRVLRSAPQLLVQPLDVVEKRLAQLRAVLCLTPSPEVERMRITLEPNNSSDVSIESDSGSGRRGGGDRDDDIGSRGGGRVGGGGRPAGVRRLARFANGFPQILTMEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELMMDQSLAPQQRRGQQETSTMVGGALRLRTFFLLRAKGTDASDDLVAAVARCPSLLTLSSNTSMRKVEKLQEALPSGLVA-RTIVAKEPRVMSLDMASTVPRKLADLSHAFAELA--GGXXXXXXXXXXXXXXXXXXXXXXXXMMAQTLRYNPNALRFDPATLARKLEVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKXXXXXXXXXXXXXXXXXXXXXMLLALSEKTLRVKRDAWRSIVEDRVDVPWEQVVADFPQLLCQGFGRAARVPFLLLDXXXXXXXXXXXXXXXXXXXXXGERVVTTAVAMVAAGGLGDEVLRATHAPGVASDGVAAGDGVGAAAAAAAGGDSWRSGVGKERSAGGGVDGGSGVAPRTMSAAAACREVCRRVSDFESDHPGYPCFLDSLLVAAXXXXX----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSSRDHSSRPPPQPVPI----------------------------------------PLP----STPLPPSAPSAG-EARVAVKSEKALGAAMAEVARGPGGXXXXXXMLIPPEAEMQDNSGR 897
BLAST of mRNA_C-linearis_contig109.1128.1 vs. uniprot
Match: D7G2Q0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q0_ECTSI) HSP 1 Score: 340 bits (872), Expect = 1.030e-100 Identity = 209/351 (59.54%), Postives = 240/351 (68.38%), Query Frame = 3
Query: 1926 MEPHTVRAKIEGLEGLLPGMDGLAVVGSRPHLLGFSVRQNVSLKVSGLRALMKRERAGPEESR---KGRHRRQR-HQASATQAGSDLAAAVTRCPSLLTLSSETAARKVEELQQALPPGLDASRAVVAKEPRVLALDMGDTVPRKLAGLTRALAAHAPRGGDGNEMVE---------------AAAAQVLRYYPNALRLDPATLAGKLEALHRAGLSSETVLAVVGGAPRCLSAAAGTLEQRVSTLRGAFPSASVDGMLGQAPGLLLNRVDPVARVEVLQELFPSLNPLRLVEGAPMLLALSESTLRAKSEAWRNVLEARVEQSWEQAIAEFPQLLCQGLGRAARVAFLLL 2921
MEPHTVRAKIEGLE LLPGMDGLA+VGSRPHLLGF VR+NVSLKVS LR LM + P++ R GR +++ + A+ T A DL AAV RCPSLLTLSS+T+ RKVE+LQ+ALP GL A R +VAKEPRV++LDM TVPRKLA L RA HA GG AQ LRY PNALR DPATLA KL L AGLS+ETV VVGGAPRCLSAAAGTLE RVS LR AFPS + +LG+AP LL +DPVA++ MLLALSE+TLR K +AWR++LE RV+ WEQ +A+FPQLLCQGLGRAARV FLLL
Sbjct: 1 MEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELMMDQSLPPQQRRGQQPGRGQQETSNMANGTDASDDLVAAVARCPSLLTLSSDTSMRKVEKLQEALPSGLVA-RTIVAKEPRVMSLDMTSTVPRKLADLARAFTEHA--GGXXXXXXXXXXXXXXXXXXXXXXVMMAQTLRYNPNALRFDPATLARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKIXXXXXXXXXXXXXXXXXXXXMLLALSENTLRVKRDAWRSILENRVDVPWEQVVADFPQLLCQGLGRAARVPFLLL 348 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1128.1 >prot_C-linearis_contig109.1128.1 ID=prot_C-linearis_contig109.1128.1|Name=mRNA_C-linearis_contig109.1128.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1211bp MGGKRPRPWSRQSSGSSGSVAVAAAAFALAALSLPEAGALSGSCTTGRRSback to top mRNA from alignment at C-linearis_contig109:371888..383649- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1128.1 ID=mRNA_C-linearis_contig109.1128.1|Name=mRNA_C-linearis_contig109.1128.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11762bp|location=Sequence derived from alignment at C-linearis_contig109:371888..383649- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:371888..383649- >mRNA_C-linearis_contig109.1128.1 ID=mRNA_C-linearis_contig109.1128.1|Name=mRNA_C-linearis_contig109.1128.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7266bp|location=Sequence derived from alignment at C-linearis_contig109:371888..383649- (Chordaria linearis ClinC8C monoicous)back to top |