mRNA_C-linearis_contig109.1127.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1127.1
Unique NamemRNA_C-linearis_contig109.1127.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: D7G2P9_ECTSI (ATP synthase: assembly factor for F1 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P9_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 7.910e-118
Identity = 189/244 (77.46%), Postives = 205/244 (84.02%), Query Frame = 1
Query:  265 ERKSGT---EAVAPAAEVPVDVRGVPRAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQ------LRQAGGKVMGKAAAPSALSLSLLESWPLRMLKPLLANTMGRGLSPEQKAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAEG 969
            ER+ G+   E  A    VP+D RG+PR KQRV+VELGTFHEFTAVNK GGKIFEASR+LI  KDA  FPAMEVSNLASD SAAAA  VD LS+VLAGRVTMVGLFHRQFGYSML +WT PFE+ F +      L  AGGK  G AA PSALSLSLLESWPLRM+KPLL +TMGRGLSPE+KAAFFYRFGPTEE+RKALGIVNRLTLYVLLVDQ+GRVRWQGTGK TPDEVESL+RCARQLAAEG
Sbjct:  110 ERRDGSASGETAAVPEGVPLDARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLAGRVTMVGLFHRQFGYSMLESWTGPFEETFARGQRGNKLPSAGGKTTG-AAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEG 352          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A2U1PZI5_ARTAN (ATPase assembly factor ATP10, mitochondria n=3 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PZI5_ARTAN)

HSP 1 Score: 101 bits (252), Expect = 2.300e-21
Identity = 77/219 (35.16%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEV--SNLASDDSAAAAEGVDLLS-KVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQ---KAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
            RA+ + E+  G F +   + ++GGKI  A++ +I A  AV FP +EV  SN  S      + G D  S K    + TM+ L  R     M  +W+ PF +AF     +G K +          +S +ESW L M  ++ LL   + +    E    +    Y FG     RK L I+N LT Y+ LVD+ GR+RWQG G  TPDEV SL+ C   L  E
Sbjct:   59 RARLKDEMNRGYFADMAELKQHGGKIATANKVIIPAMAAVKFPQLEVNYSNGKSFKLPITSYGTDTESVKADIPKATMMCLSFRAASQEMTDSWSVPFVEAF-----SGSKKV------QLYEISFIESWLLSMTPIRKLLLRVLKKSKPQENGVLQRQIGYAFGDHYYFRKELKILNLLTGYIFLVDKFGRIRWQGFGLATPDEVSSLLSCTSLLLEE 266          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A6P6X895_COFAR (mitochondrial ATPase complex subunit ATP10-like isoform X1 n=7 Tax=Coffea TaxID=13442 RepID=A0A6P6X895_COFAR)

HSP 1 Score: 100 bits (248), Expect = 1.040e-20
Identity = 74/227 (32.60%), Postives = 113/227 (49.78%), Query Frame = 1
Query:  334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVS---------NLASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKA-----AFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
            RA+   E+  G F +F  + K+GGKI  A++ +I A  A  FPA+EV+          + S  + ++A+ +D+       + +++ L  R    +M+ +W++PF   F   ++                +SL+ESW LR   +K LL   M +  SP+ K         Y FG     RK L I+N LT YV L+D+ GR+RWQG G  TP+EV SL+ C   L  E
Sbjct:   69 RARISDEMSRGYFADFGEMKKHGGKIAMANKIIIPAMAATKFPALEVNFSDGSSLKLPITSSGNGSSADKLDV------PKASLLCLSFRGSSQAMINSWSKPFLDEFCSSKET-----------QLFEVSLIESWLLRRNPIKKLLLRIMKKP-SPDDKKNVLQRQIVYSFGDHYYFRKELNILNLLTGYVFLLDKFGRIRWQGFGSATPEEVSSLLACTALLLEE 277          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A200R5C4_9MAGN (ATPase assembly factor ATP10 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R5C4_9MAGN)

HSP 1 Score: 99.0 bits (245), Expect = 2.740e-20
Identity = 73/222 (32.88%), Postives = 109/222 (49.10%), Query Frame = 1
Query:  334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDS-----AAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGR----GLSPEQKAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
            RA+   E+  G F + + + K+GGKI  AS  +I A +AV FP++EV+   SD +     A + E  D   K+     ++V L  R     M+ +W+ PF  AF   +                 +S +ESW L +  +K LL   M +    G +   +    Y FG     RK L I+N LT Y+ L+D+ GR+RWQG G  T +E++SL+ CA  L  E
Sbjct:   69 RARLSDEMSRGYFADMSDLKKHGGKIAMASNTIIPAMEAVKFPSLEVNY--SDGTCLNLPATSQENADKPDKMAIPGASLVCLSFRASSQGMIDSWSVPFVDAFSASKNV-----------RIFEVSFIESWFLSLNPIKWLLLRIMRKSKTDGKNDVLQRQLVYSFGDKYYFRKELKILNLLTGYIFLLDRFGRIRWQGFGLATEEELKSLVSCASLLLKE 277          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A1U7WUZ9_NICSY (uncharacterized protein LOC104230097 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WUZ9_NICSY)

HSP 1 Score: 97.1 bits (240), Expect = 2.960e-20
Identity = 70/210 (33.33%), Postives = 106/210 (50.48%), Query Frame = 1
Query:  364 GTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDSA------AAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKAAFF----YRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQL 957
            G F +   + ++GGKI  A++ +I A  AV FPA+EVSN  SD S+      +A  GV+  +K  A + +++ L  R    +M+ +W++PF   F    +                +S ++SW L +  +K LL  TM +    E K        Y FG     RK L I+N LT Y  L+D+ GR+RWQG+G  T +E+ SL+ C   L
Sbjct:    4 GYFADINELKQHGGKIATANKIIIPAVAAVKFPALEVSN--SDGSSLKLPITSAGNGVEA-NKAEAPKASLLCLSFRASSQAMVDSWSKPFLDTFKDSNRV-----------QLYEISFIDSWLLTLSPVKKLLLRTMRKSNPDESKDVLHRQIVYSFGDHYYFRKELKILNLLTGYTFLLDKFGRIRWQGSGLATEEELSSLLSCTSLL 199          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A1S4D421_TOBAC (uncharacterized protein LOC107825726 isoform X1 n=7 Tax=Nicotiana TaxID=4085 RepID=A0A1S4D421_TOBAC)

HSP 1 Score: 97.8 bits (242), Expect = 5.920e-20
Identity = 71/220 (32.27%), Postives = 111/220 (50.45%), Query Frame = 1
Query:  334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDS------AAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKAAFF----YRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQL 957
            RA+ + E+  G F +   + ++GGKI  A++ +I A  AV FPA+EV++  SD S      A+   GV  ++K  A + +++ L  R    +M+ +W++PF   F    +                +S ++SW L +  +K LL  TM +    E K        Y FG     RK L I+N LT Y  L+D+ GR+RWQG+G  T +E+ SL+ C   L
Sbjct:   58 RARLKDEMNRGYFADINELKQHGGKIATANKIIIPAVAAVKFPALEVNH--SDGSSLKLPIASIGNGV-AVNKAEAPKASLLCLSFRASSQAMVDSWSKPFLDTFKDSNRV-----------QLYEISFIDSWLLTLSPVKKLLLRTMRKSNPDESKDVLHRQIVYSFGDHYYFRKELKILNLLTGYTFLLDKFGRIRWQGSGLATEEELSSLLSCTSLL 263          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A7N0RCX7_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RCX7_KALFE)

HSP 1 Score: 97.8 bits (242), Expect = 6.490e-20
Identity = 75/223 (33.63%), Postives = 107/223 (47.98%), Query Frame = 1
Query:  334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDSA-----AAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESW--PLRMLKPLLANTMGRGLSPEQKAA-----FFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
            RA+ + E+  G F +   + ++GGKI  AS+ LI A  AV FP +E +N     S      +   G D  S  +  + +++ L  R    +M+ +WT PF  A     Q             A  +S +ESW   L+ +K LL   M +  +PE +       F Y FG     RK L I+N LT Y  LVD+ GR+RWQG G  +P+EV SL+ C   L  E
Sbjct:   63 RARLKDEMNRGYFADINELKEHGGKIAAASKVLIPAAVAVKFPVLE-ANYPDGTSVKLPVGSETNGADAYSAAVP-KASLICLSFRASSQAMVDSWTLPFLDAVADSEQL-----------RAYEVSFIESWFLSLKPMKSLLLRRMKKS-NPEGREGPLTRQFVYSFGDQYYFRKELKILNLLTGYAFLVDKFGRIRWQGFGFASPEEVSSLVSCTSLLLEE 271          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: UPI00098E00BB (uncharacterized protein LOC109845377 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E00BB)

HSP 1 Score: 97.4 bits (241), Expect = 7.160e-20
Identity = 66/217 (30.41%), Postives = 108/217 (49.77%), Query Frame = 1
Query:  328 VPRAKQRVEVEL--GTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
            + + K R+  EL  G F + + + KNGGKI  A++ LI   +A+ FP +EV+              +  + + A   +++ L  R    +M+ +W+ PF  AF             +A      +S ++SW L +  ++ +    M +  SP+++    Y FG    +RK L I+N LT Y+ L+D+ GR+RWQG G  T +EV SL+ CA  L  E
Sbjct:   56 IEKEKARLSDELSRGYFADISEIRKNGGKIAMANKTLIPLLEAIKFPDLEVNLSNGSSLKLPVTSGESTAHIDAPLASLLCLSFRASSQTMVESWSVPFVHAF-----------NDSAEVQVYEVSFVDSWLLSLGPVRKMFIKMMKKSASPQRQIV--YSFGDHYYLRKKLQILNLLTGYIFLLDRFGRIRWQGFGLATGEEVSSLLSCALLLLEE 259          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: M0ZHZ0_SOLTU (ATP10 protein n=5 Tax=Solanum TaxID=4107 RepID=M0ZHZ0_SOLTU)

HSP 1 Score: 97.4 bits (241), Expect = 8.970e-20
Identity = 70/220 (31.82%), Postives = 113/220 (51.36%), Query Frame = 1
Query:  334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDS------AAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKAAFF----YRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQL 957
            RA+ + E+  G F +   + ++GGKI  A++ +I A  AV FPA+EV +  SD S       +  +GV+  +K+ A + +++ +  R    +M+ +W++PF   F   ++                +SL++SW L +  +K LL   M +    E K        Y FG     RK L I+N LT Y+ LVD+ GR+RWQG+G  T +E+ SL+ C   L
Sbjct:   61 RARLKDEMNRGYFADINELKEHGGKIATANKIIIPAMVAVKFPALEVIH--SDGSNLKLPITSTGDGVEA-NKLEASKASLMCVSFRASSQAMIDSWSKPFLDTFKDSKRV-----------QLYEISLIDSWFLTLSPVKKLLLRMMRKSNPHESKDVLHRQIVYSFGDHYYFRKELKILNLLTGYMFLVDKFGRIRWQGSGLATEEELSSLLSCTSFL 266          
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A061GW47_THECC (Mitochondria isoform 2 n=8 Tax=Byttnerioideae TaxID=214909 RepID=A0A061GW47_THECC)

HSP 1 Score: 96.7 bits (239), Expect = 1.970e-19
Identity = 71/225 (31.56%), Postives = 106/225 (47.11%), Query Frame = 1
Query:  334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSN---------LASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPL--RMLKPLLANTMGRGLSPEQKAA---FFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
            RA+   E+  G F + + + ++GGKI  A++ +I    AV FP +EV+          + S+     AE      K+   +V++V L  R     M+ TW  PF +AF   +                 +S ++SW L    +K LL  TM + +  E+ A      Y FG     RK L I+N LT Y+ L+D+ GRVRWQG G  T +E+ SL+ C   L  E
Sbjct:   60 RARLADEMNRGYFADISELKQHGGKIAVANKIIIPTMAAVKFPGLEVTYSDGRTLKLPIVSNGDRVDAE------KLAVPKVSLVCLSFRASSQKMIDTWCTPFSEAFSNSKDV-----------QLYEVSFIDSWLLCRNPIKRLLLRTMRKSIDGEKDALQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKLGRVRWQGFGLATQEELSSLLSCTTHLLEE 267          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P9_ECTSI7.910e-11877.46ATP synthase: assembly factor for F1 component n=2... [more]
A0A2U1PZI5_ARTAN2.300e-2135.16ATPase assembly factor ATP10, mitochondria n=3 Tax... [more]
A0A6P6X895_COFAR1.040e-2032.60mitochondrial ATPase complex subunit ATP10-like is... [more]
A0A200R5C4_9MAGN2.740e-2032.88ATPase assembly factor ATP10 n=1 Tax=Macleaya cord... [more]
A0A1U7WUZ9_NICSY2.960e-2033.33uncharacterized protein LOC104230097 n=1 Tax=Nicot... [more]
A0A1S4D421_TOBAC5.920e-2032.27uncharacterized protein LOC107825726 isoform X1 n=... [more]
A0A7N0RCX7_KALFE6.490e-2033.63Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
UPI00098E00BB7.160e-2030.41uncharacterized protein LOC109845377 n=1 Tax=Aspar... [more]
M0ZHZ0_SOLTU8.970e-2031.82ATP10 protein n=5 Tax=Solanum TaxID=4107 RepID=M0Z... [more]
A0A061GW47_THECC1.970e-1931.56Mitochondria isoform 2 n=8 Tax=Byttnerioideae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:366085..369095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue1.2e-95
Seed eggNOG ortholog2880.D7G2P9
Preferred nameATP10
KEGG koko:K13717,ko:K18192
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0033615,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051082,GO:0065003,GO:0070071,GO:0071840,GO:0098573
EggNOG free text desc.mitochondrial proton-transporting ATP synthase complex assembly
EggNOG OGsKOG4614@1,KOG4614@2759
Ec32 ortholog descriptionATP synthase: assembly factor for F1 component
Ec32 orthologEc-11_003050.1
EC3.4.19.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029,ko04121
Exons5
Model size1024
Cds size1023
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1127.1prot_C-linearis_contig109.1127.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 366085..369095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927421.540715-CDS-C-linearis_contig109:366084..3662911622927421.540715-CDS-C-linearis_contig109:366084..366291Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 366085..366291 -
1690879691.3532665-CDS-C-linearis_contig109:366084..3662911690879691.3532665-CDS-C-linearis_contig109:366084..366291Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 366085..366291 -
1622927421.5520818-CDS-C-linearis_contig109:366489..3666591622927421.5520818-CDS-C-linearis_contig109:366489..366659Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 366490..366659 -
1690879691.3631096-CDS-C-linearis_contig109:366489..3666591690879691.3631096-CDS-C-linearis_contig109:366489..366659Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 366490..366659 -
1622927421.5609484-CDS-C-linearis_contig109:367609..3678511622927421.5609484-CDS-C-linearis_contig109:367609..367851Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 367610..367851 -
1690879691.3719056-CDS-C-linearis_contig109:367609..3678511690879691.3719056-CDS-C-linearis_contig109:367609..367851Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 367610..367851 -
1622927421.569062-CDS-C-linearis_contig109:368322..3686351622927421.569062-CDS-C-linearis_contig109:368322..368635Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 368323..368635 -
1690879691.3814876-CDS-C-linearis_contig109:368322..3686351690879691.3814876-CDS-C-linearis_contig109:368322..368635Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 368323..368635 -
1622927421.5794733-CDS-C-linearis_contig109:369004..3690951622927421.5794733-CDS-C-linearis_contig109:369004..369095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 369005..369095 -
1690879691.3932576-CDS-C-linearis_contig109:369004..3690951690879691.3932576-CDS-C-linearis_contig109:369004..369095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 369005..369095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1127.1

>prot_C-linearis_contig109.1127.1 ID=prot_C-linearis_contig109.1127.1|Name=mRNA_C-linearis_contig109.1127.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=341bp
MESVVQARRLGSVFLKRLLPPNVYLATRAFVSCHHASKQRRAPETTSRSA
LPQGLSTSAGAAAAGTSEGDTGCSSKRSSTGDGGSGVSERKSGTEAVAPA
AEVPVDVRGVPRAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDA
VVFPAMEVSNLASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLP
TWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRMLKPLLANT
MGRGLSPEQKAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQG
TGKGTPDEVESLIRCARQLAAEGGTSSNGSSGEGGEGARAR
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mRNA from alignment at C-linearis_contig109:366085..369095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1127.1 ID=mRNA_C-linearis_contig109.1127.1|Name=mRNA_C-linearis_contig109.1127.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3011bp|location=Sequence derived from alignment at C-linearis_contig109:366085..369095- (Chordaria linearis ClinC8C monoicous)
ATGGAATCGGTCGTCCAAGCAAGAAGGCTTGGATCAGTCTTTCTGAAACG TCTTCTTCCGCCAAACGTCTACTTGGCAACGCGAGCATTTGGTGCGTTTT CTTCGGCAGAGTTTTATGTAGGATCATGGAATGCGACCTGCCCGCAACAG CCTTGTTGACCTGTGTCCGTTCCCAAGTATGCACCTTGCCCTTCTTTTTA TGTCTTTGCGTCTAGTTGTCATGTTTGCCCTGCTGGGAAAAAAGAACGCT GGGTGGAAGGCGTCACCGGCAACGAACGGTTAGAATCGCGCAGGTCGGCG TAACTGCGGTGCAGCAGATGGTCCCCCAAACGAACTCCTCCTGCACAAAG GCACACCTCTCTTTCCTAACCGAACGCCCTCCTGCTCTCTCCTGGCTGTC ATTGCTGCTCCTATCGCCGCACGCTCCCCCTACTGCTGCACCCCGACGCC CGTCCACAAGTGTCCTGTCACCACGCCTCCAAGCAAAGACGAGCACCTGA AACAACAAGCCGTTCCGCCTTGCCACAAGGTCTGTCGACATCAGCCGGGG CGGCGGCTGCTGGCACCAGCGAAGGCGACACAGGCTGCAGTAGCAAACGG AGCAGCACTGGGGACGGGGGGTCAGGAGTTTCGGAGCGAAAGAGTGGGAC TGAGGCCGTGGCGCCGGCGGCGGAGGTGCCGGTGGATGTGAGGGGAGTGC CGCGCGCGAAGCAGCGCGTCGAGGTGGAGCTCGGGACGTTTCACGAGTTC ACTGCGGTCAACAAGAATGGCGGGTGAGGAACGGTAACGGTTGGGCACAG TATCCTGAGCAGAGAGGTGTTACAACTACCGTATACGCTGGTGTGTTTCG GGCTTGGCAATGGAAGTTCGAAGGGTACATGGGTTTCGGAGGCCGCTGCG AGAGCTTCCAAAAACAGAAAGCTTAGTCTATTAATAGCATAGCACTAGCA CGCTTGTTTTCGTTTTGTGTGGGGGCTTTCGGTCAAACTGTTTCCCTAGC ATCACCGCCCGATAATAATTTACTGCGTTGCCTGAGTGGGATAGACTATG TGCTCCGTCCTCGATTTAAAATTGCAAACTCGGACTCCCCTCCCCGAGCC CCCCTAAAACCGGCTTCAGCTTGAGCCACCATATCTTCATACTGTACCCC CTTGTCGAACCTCCCCCCGACGGGTACGTACATACTTTTTGAAAGATACG ATGTCAATCCCTCATTTATCCTCGTTCCCGCTCCCCGCGCGCAGAAAGAT TTTCGAGGCTAGCCGCAAGCTCATCCTGGCAAAGGACGCCGTGGTGTTCC CGGCCATGGAGGTGTCCAACCTCGCGAGCGACGACTCCGCGGCGGCGGCA GAAGGGGTGGACCTCCTGTCGAAGGTGCTGGCCGGCCGCGTGACGATGGT GGGGCTGTTTCACCGCCAGTTCGGATACAGCATGCTTCCCACCTGGACGG AGCCCTTCGAGAAGGCGTTCCCGCAGCTACGGCAGGGTGAGTGAGAGGGG GTTGGGATGTATGTGTGTGGGAGTGCATGCATGTGCGTGTGTGCGAGGTT GTGGTGTTTCGTTGGTTTGGCGTGCTTTAGGCCGGGCGCTTTACGGGCTG ACCATTTTGGGATGTTTTGGACGGTTCTGGTTAGCCGATTGCCAGGCTGC TTTCCACGTGTCGCGCTCTTTTTCACGGCAGGGCTATGTACGGCACTCTC ATGAGAACAACATCGAACTCAAGATGCACTGCCGCCCTCCCGCGCTTGCG AGATGTGTACATGTTGTATTCGCGAGCAAGCAAACCCACAGAGCTTGTTC TTGGGCACCTACTGGGACAGGCGTCATGGCCGAAGTGATGTTGCTGGTTA TTCATTTGTGTTGAGCGGCACTGCTGCTGCGGGAGCCGAACCACGCCACC ACGCCCCTTTTCCTGAACCTCTCTCACGAGTTGTCCCTCGGAAGCATGTT ACCTTCCACGCCACAGCAGTCGTCCAGCACTTGACGGTGTATCGCGCTCG AGGAGTCTTTTTTCTCGCATGTGTCGACGAAAATAATAGACGGAATTCGT GCAGCGGCCCGGTTTGTTTTGGGTATGTCGTAGCGTACCACGGCCATGAT GCATGCATGACATCGAGTGTGCCTTGCTTGGCCACTTGACCGTTACAGGC CTTGCGGATCAGCTCCAGAGATTATTTATCTTGGTTTGTGTCGTCCTCGA AGCCTTCCTTGCGCAGGGTTTGCAAGATGCACAGCCTGCGCTCTAACCTG TTCAGATGGTGTACCAATCGACAGCGGTGCGTGTCTTTGTTGGGGGGGGG GCGGCGGTGTTGATCGATGTATTTTTCCCCTGACGCCGTCCTCGCCGCCC ACCCCTCACGATGCTCTCCTCTCCTCCGAAGGTTACCTTCTCTTTCCCAA TTGTTTTGCTGTTTCATGTTCTGTCTGCCGCTGCAGCAGGGGGCAAGGTG ATGGGCAAAGCAGCGGCGCCCTCCGCCTTGTCGCTCTCGCTGCTGGAGTC CTGGCCGCTGCGGATGCTGAAGCCGCTGCTGGCGAACACGATGGGGAGGG GGCTTTCCCCCGAGCAGAAAGCGGCGTTCTTTTATCGCTTCGGCCCGACC GAGGAGGTGCGGCGGCGTGCGTTGTTTTTTTTCGCCGTGAGCAACGCGCA CGGCTTGTGTATTGTGGCGCGTGCGTATGTAAGCAGGCGGCTAAACAATG CACCAATCGACCCTCCTTGCGAACCAGAAGAAGTAACCTTGCTTAAACTT CTCTCTCACGCTCCCCCCCCCCGGGCGCCCACCGCTGTCTCCCTGCACCA AAAGATGCGCAAGGCTTTGGGGATTGTCAACCGCCTGACGCTGTACGTGC TCCTGGTGGACCAGGAGGGCAGGGTGCGATGGCAGGGGACCGGAAAGGGC ACCCCCGACGAAGTAGAATCGCTCATCCGATGTGCTCGCCAGCTCGCCGC CGAAGGCGGCACCAGCAGTAACGGGAGCAGCGGTGAGGGTGGGGAGGGTG CGAGGGCGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig109:366085..369095-

>mRNA_C-linearis_contig109.1127.1 ID=mRNA_C-linearis_contig109.1127.1|Name=mRNA_C-linearis_contig109.1127.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at C-linearis_contig109:366085..369095- (Chordaria linearis ClinC8C monoicous)
ATGGAATCGGTCGTCCAAGCAAGAAGGCTTGGATCAGTCTTTCTGAAACG
TCTTCTTCCGCCAAACGTCTACTTGGCAACGCGAGCATTTGATGGAATCG
GTCGTCCAAGCAAGAAGGCTTGGATCAGTCTTTCTGAAACGTCTTCTTCC
GCCAAACGTCTACTTGGCAACGCGAGCATTTGTGTCCTGTCACCACGCCT
CCAAGCAAAGACGAGCACCTGAAACAACAAGCCGTTCCGCCTTGCCACAA
GGTCTGTCGACATCAGCCGGGGCGGCGGCTGCTGGCACCAGCGAAGGCGA
CACAGGCTGCAGTAGCAAACGGAGCAGCACTGGGGACGGGGGGTCAGGAG
TTTCGGAGCGAAAGAGTGGGACTGAGGCCGTGGCGCCGGCGGCGGAGGTG
CCGGTGGATGTGAGGGGAGTGCCGCGCGCGAAGCAGCGCGTCGAGGTGGA
GCTCGGGACGTTTCACGAGTTCACTGCGGTCAACAAGAATGGCGGTGTCC
TGTCACCACGCCTCCAAGCAAAGACGAGCACCTGAAACAACAAGCCGTTC
CGCCTTGCCACAAGGTCTGTCGACATCAGCCGGGGCGGCGGCTGCTGGCA
CCAGCGAAGGCGACACAGGCTGCAGTAGCAAACGGAGCAGCACTGGGGAC
GGGGGGTCAGGAGTTTCGGAGCGAAAGAGTGGGACTGAGGCCGTGGCGCC
GGCGGCGGAGGTGCCGGTGGATGTGAGGGGAGTGCCGCGCGCGAAGCAGC
GCGTCGAGGTGGAGCTCGGGACGTTTCACGAGTTCACTGCGGTCAACAAG
AATGGCGGAAAGATTTTCGAGGCTAGCCGCAAGCTCATCCTGGCAAAGGA
CGCCGTGGTGTTCCCGGCCATGGAGGTGTCCAACCTCGCGAGCGACGACT
CCGCGGCGGCGGCAGAAGGGGTGGACCTCCTGTCGAAGGTGCTGGCCGGC
CGCGTGACGATGGTGGGGCTGTTTCACCGCCAGTTCGGATACAGCATGCT
TCCCACCTGGACGGAGCCCTTCGAGAAGGCGTTCCCGCAGCTACGGCAGG
AAAGATTTTCGAGGCTAGCCGCAAGCTCATCCTGGCAAAGGACGCCGTGG
TGTTCCCGGCCATGGAGGTGTCCAACCTCGCGAGCGACGACTCCGCGGCG
GCGGCAGAAGGGGTGGACCTCCTGTCGAAGGTGCTGGCCGGCCGCGTGAC
GATGGTGGGGCTGTTTCACCGCCAGTTCGGATACAGCATGCTTCCCACCT
GGACGGAGCCCTTCGAGAAGGCGTTCCCGCAGCTACGGCAGGCAGGGGGC
AAGGTGATGGGCAAAGCAGCGGCGCCCTCCGCCTTGTCGCTCTCGCTGCT
GGAGTCCTGGCCGCTGCGGATGCTGAAGCCGCTGCTGGCGAACACGATGG
GGAGGGGGCTTTCCCCCGAGCAGAAAGCGGCGTTCTTTTATCGCTTCGGC
CCGACCGAGGAGCAGGGGGCAAGGTGATGGGCAAAGCAGCGGCGCCCTCC
GCCTTGTCGCTCTCGCTGCTGGAGTCCTGGCCGCTGCGGATGCTGAAGCC
GCTGCTGGCGAACACGATGGGGAGGGGGCTTTCCCCCGAGCAGAAAGCGG
CGTTCTTTTATCGCTTCGGCCCGACCGAGGAGATGCGCAAGGCTTTGGGG
ATTGTCAACCGCCTGACGCTGTACGTGCTCCTGGTGGACCAGGAGGGCAG
GGTGCGATGGCAGGGGACCGGAAAGGGCACCCCCGACGAAGTAGAATCGC
TCATCCGATGTGCTCGCCAGCTCGCCGCCGAAGGCGGCACCAGCAGTAAC
GGGAGCAGCGGTGAGGGTGGGGAGGGTGCGAGGGCGCGGATGCGCAAGGC
TTTGGGGATTGTCAACCGCCTGACGCTGTACGTGCTCCTGGTGGACCAGG
AGGGCAGGGTGCGATGGCAGGGGACCGGAAAGGGCACCCCCGACGAAGTA
GAATCGCTCATCCGATGTGCTCGCCAGCTCGCCGCCGAAGGCGGCACCAG
CAGTAACGGGAGCAGCGGTGAGGGTGGGGAGGGTGCGAGGGCGCGG
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