mRNA_C-linearis_contig109.1127.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: D7G2P9_ECTSI (ATP synthase: assembly factor for F1 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P9_ECTSI) HSP 1 Score: 355 bits (910), Expect = 7.910e-118 Identity = 189/244 (77.46%), Postives = 205/244 (84.02%), Query Frame = 1
Query: 265 ERKSGT---EAVAPAAEVPVDVRGVPRAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQ------LRQAGGKVMGKAAAPSALSLSLLESWPLRMLKPLLANTMGRGLSPEQKAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAEG 969
ER+ G+ E A VP+D RG+PR KQRV+VELGTFHEFTAVNK GGKIFEASR+LI KDA FPAMEVSNLASD SAAAA VD LS+VLAGRVTMVGLFHRQFGYSML +WT PFE+ F + L AGGK G AA PSALSLSLLESWPLRM+KPLL +TMGRGLSPE+KAAFFYRFGPTEE+RKALGIVNRLTLYVLLVDQ+GRVRWQGTGK TPDEVESL+RCARQLAAEG
Sbjct: 110 ERRDGSASGETAAVPEGVPLDARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLAGRVTMVGLFHRQFGYSMLESWTGPFEETFARGQRGNKLPSAGGKTTG-AAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEG 352
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A2U1PZI5_ARTAN (ATPase assembly factor ATP10, mitochondria n=3 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PZI5_ARTAN) HSP 1 Score: 101 bits (252), Expect = 2.300e-21 Identity = 77/219 (35.16%), Postives = 108/219 (49.32%), Query Frame = 1
Query: 334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEV--SNLASDDSAAAAEGVDLLS-KVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQ---KAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
RA+ + E+ G F + + ++GGKI A++ +I A AV FP +EV SN S + G D S K + TM+ L R M +W+ PF +AF +G K + +S +ESW L M ++ LL + + E + Y FG RK L I+N LT Y+ LVD+ GR+RWQG G TPDEV SL+ C L E
Sbjct: 59 RARLKDEMNRGYFADMAELKQHGGKIATANKVIIPAMAAVKFPQLEVNYSNGKSFKLPITSYGTDTESVKADIPKATMMCLSFRAASQEMTDSWSVPFVEAF-----SGSKKV------QLYEISFIESWLLSMTPIRKLLLRVLKKSKPQENGVLQRQIGYAFGDHYYFRKELKILNLLTGYIFLVDKFGRIRWQGFGLATPDEVSSLLSCTSLLLEE 266
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A6P6X895_COFAR (mitochondrial ATPase complex subunit ATP10-like isoform X1 n=7 Tax=Coffea TaxID=13442 RepID=A0A6P6X895_COFAR) HSP 1 Score: 100 bits (248), Expect = 1.040e-20 Identity = 74/227 (32.60%), Postives = 113/227 (49.78%), Query Frame = 1
Query: 334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVS---------NLASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKA-----AFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
RA+ E+ G F +F + K+GGKI A++ +I A A FPA+EV+ + S + ++A+ +D+ + +++ L R +M+ +W++PF F ++ +SL+ESW LR +K LL M + SP+ K Y FG RK L I+N LT YV L+D+ GR+RWQG G TP+EV SL+ C L E
Sbjct: 69 RARISDEMSRGYFADFGEMKKHGGKIAMANKIIIPAMAATKFPALEVNFSDGSSLKLPITSSGNGSSADKLDV------PKASLLCLSFRGSSQAMINSWSKPFLDEFCSSKET-----------QLFEVSLIESWLLRRNPIKKLLLRIMKKP-SPDDKKNVLQRQIVYSFGDHYYFRKELNILNLLTGYVFLLDKFGRIRWQGFGSATPEEVSSLLACTALLLEE 277
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A200R5C4_9MAGN (ATPase assembly factor ATP10 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R5C4_9MAGN) HSP 1 Score: 99.0 bits (245), Expect = 2.740e-20 Identity = 73/222 (32.88%), Postives = 109/222 (49.10%), Query Frame = 1
Query: 334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDS-----AAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGR----GLSPEQKAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
RA+ E+ G F + + + K+GGKI AS +I A +AV FP++EV+ SD + A + E D K+ ++V L R M+ +W+ PF AF + +S +ESW L + +K LL M + G + + Y FG RK L I+N LT Y+ L+D+ GR+RWQG G T +E++SL+ CA L E
Sbjct: 69 RARLSDEMSRGYFADMSDLKKHGGKIAMASNTIIPAMEAVKFPSLEVNY--SDGTCLNLPATSQENADKPDKMAIPGASLVCLSFRASSQGMIDSWSVPFVDAFSASKNV-----------RIFEVSFIESWFLSLNPIKWLLLRIMRKSKTDGKNDVLQRQLVYSFGDKYYFRKELKILNLLTGYIFLLDRFGRIRWQGFGLATEEELKSLVSCASLLLKE 277
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A1U7WUZ9_NICSY (uncharacterized protein LOC104230097 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WUZ9_NICSY) HSP 1 Score: 97.1 bits (240), Expect = 2.960e-20 Identity = 70/210 (33.33%), Postives = 106/210 (50.48%), Query Frame = 1
Query: 364 GTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDSA------AAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKAAFF----YRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQL 957
G F + + ++GGKI A++ +I A AV FPA+EVSN SD S+ +A GV+ +K A + +++ L R +M+ +W++PF F + +S ++SW L + +K LL TM + E K Y FG RK L I+N LT Y L+D+ GR+RWQG+G T +E+ SL+ C L
Sbjct: 4 GYFADINELKQHGGKIATANKIIIPAVAAVKFPALEVSN--SDGSSLKLPITSAGNGVEA-NKAEAPKASLLCLSFRASSQAMVDSWSKPFLDTFKDSNRV-----------QLYEISFIDSWLLTLSPVKKLLLRTMRKSNPDESKDVLHRQIVYSFGDHYYFRKELKILNLLTGYTFLLDKFGRIRWQGSGLATEEELSSLLSCTSLL 199
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A1S4D421_TOBAC (uncharacterized protein LOC107825726 isoform X1 n=7 Tax=Nicotiana TaxID=4085 RepID=A0A1S4D421_TOBAC) HSP 1 Score: 97.8 bits (242), Expect = 5.920e-20 Identity = 71/220 (32.27%), Postives = 111/220 (50.45%), Query Frame = 1
Query: 334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDS------AAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKAAFF----YRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQL 957
RA+ + E+ G F + + ++GGKI A++ +I A AV FPA+EV++ SD S A+ GV ++K A + +++ L R +M+ +W++PF F + +S ++SW L + +K LL TM + E K Y FG RK L I+N LT Y L+D+ GR+RWQG+G T +E+ SL+ C L
Sbjct: 58 RARLKDEMNRGYFADINELKQHGGKIATANKIIIPAVAAVKFPALEVNH--SDGSSLKLPIASIGNGV-AVNKAEAPKASLLCLSFRASSQAMVDSWSKPFLDTFKDSNRV-----------QLYEISFIDSWLLTLSPVKKLLLRTMRKSNPDESKDVLHRQIVYSFGDHYYFRKELKILNLLTGYTFLLDKFGRIRWQGSGLATEEELSSLLSCTSLL 263
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A7N0RCX7_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RCX7_KALFE) HSP 1 Score: 97.8 bits (242), Expect = 6.490e-20 Identity = 75/223 (33.63%), Postives = 107/223 (47.98%), Query Frame = 1
Query: 334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDSA-----AAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESW--PLRMLKPLLANTMGRGLSPEQKAA-----FFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
RA+ + E+ G F + + ++GGKI AS+ LI A AV FP +E +N S + G D S + + +++ L R +M+ +WT PF A Q A +S +ESW L+ +K LL M + +PE + F Y FG RK L I+N LT Y LVD+ GR+RWQG G +P+EV SL+ C L E
Sbjct: 63 RARLKDEMNRGYFADINELKEHGGKIAAASKVLIPAAVAVKFPVLE-ANYPDGTSVKLPVGSETNGADAYSAAVP-KASLICLSFRASSQAMVDSWTLPFLDAVADSEQL-----------RAYEVSFIESWFLSLKPMKSLLLRRMKKS-NPEGREGPLTRQFVYSFGDQYYFRKELKILNLLTGYAFLVDKFGRIRWQGFGFASPEEVSSLVSCTSLLLEE 271
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: UPI00098E00BB (uncharacterized protein LOC109845377 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E00BB) HSP 1 Score: 97.4 bits (241), Expect = 7.160e-20 Identity = 66/217 (30.41%), Postives = 108/217 (49.77%), Query Frame = 1
Query: 328 VPRAKQRVEVEL--GTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKAAFFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
+ + K R+ EL G F + + + KNGGKI A++ LI +A+ FP +EV+ + + + A +++ L R +M+ +W+ PF AF +A +S ++SW L + ++ + M + SP+++ Y FG +RK L I+N LT Y+ L+D+ GR+RWQG G T +EV SL+ CA L E
Sbjct: 56 IEKEKARLSDELSRGYFADISEIRKNGGKIAMANKTLIPLLEAIKFPDLEVNLSNGSSLKLPVTSGESTAHIDAPLASLLCLSFRASSQTMVESWSVPFVHAF-----------NDSAEVQVYEVSFVDSWLLSLGPVRKMFIKMMKKSASPQRQIV--YSFGDHYYLRKKLQILNLLTGYIFLLDRFGRIRWQGFGLATGEEVSSLLSCALLLLEE 259
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: M0ZHZ0_SOLTU (ATP10 protein n=5 Tax=Solanum TaxID=4107 RepID=M0ZHZ0_SOLTU) HSP 1 Score: 97.4 bits (241), Expect = 8.970e-20 Identity = 70/220 (31.82%), Postives = 113/220 (51.36%), Query Frame = 1
Query: 334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSNLASDDS------AAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPLRM--LKPLLANTMGRGLSPEQKAAFF----YRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQL 957
RA+ + E+ G F + + ++GGKI A++ +I A AV FPA+EV + SD S + +GV+ +K+ A + +++ + R +M+ +W++PF F ++ +SL++SW L + +K LL M + E K Y FG RK L I+N LT Y+ LVD+ GR+RWQG+G T +E+ SL+ C L
Sbjct: 61 RARLKDEMNRGYFADINELKEHGGKIATANKIIIPAMVAVKFPALEVIH--SDGSNLKLPITSTGDGVEA-NKLEASKASLMCVSFRASSQAMIDSWSKPFLDTFKDSKRV-----------QLYEISLIDSWFLTLSPVKKLLLRMMRKSNPHESKDVLHRQIVYSFGDHYYFRKELKILNLLTGYMFLVDKFGRIRWQGSGLATEEELSSLLSCTSFL 266
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Match: A0A061GW47_THECC (Mitochondria isoform 2 n=8 Tax=Byttnerioideae TaxID=214909 RepID=A0A061GW47_THECC) HSP 1 Score: 96.7 bits (239), Expect = 1.970e-19 Identity = 71/225 (31.56%), Postives = 106/225 (47.11%), Query Frame = 1
Query: 334 RAKQRVEVELGTFHEFTAVNKNGGKIFEASRKLILAKDAVVFPAMEVSN---------LASDDSAAAAEGVDLLSKVLAGRVTMVGLFHRQFGYSMLPTWTEPFEKAFPQLRQAGGKVMGKAAAPSALSLSLLESWPL--RMLKPLLANTMGRGLSPEQKAA---FFYRFGPTEEMRKALGIVNRLTLYVLLVDQEGRVRWQGTGKGTPDEVESLIRCARQLAAE 966
RA+ E+ G F + + + ++GGKI A++ +I AV FP +EV+ + S+ AE K+ +V++V L R M+ TW PF +AF + +S ++SW L +K LL TM + + E+ A Y FG RK L I+N LT Y+ L+D+ GRVRWQG G T +E+ SL+ C L E
Sbjct: 60 RARLADEMNRGYFADISELKQHGGKIAVANKIIIPTMAAVKFPGLEVTYSDGRTLKLPIVSNGDRVDAE------KLAVPKVSLVCLSFRASSQKMIDTWCTPFSEAFSNSKDV-----------QLYEVSFIDSWLLCRNPIKRLLLRTMRKSIDGEKDALQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKLGRVRWQGFGLATQEELSSLLSCTTHLLEE 267 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1127.1 >prot_C-linearis_contig109.1127.1 ID=prot_C-linearis_contig109.1127.1|Name=mRNA_C-linearis_contig109.1127.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=341bp MESVVQARRLGSVFLKRLLPPNVYLATRAFVSCHHASKQRRAPETTSRSAback to top mRNA from alignment at C-linearis_contig109:366085..369095- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1127.1 ID=mRNA_C-linearis_contig109.1127.1|Name=mRNA_C-linearis_contig109.1127.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3011bp|location=Sequence derived from alignment at C-linearis_contig109:366085..369095- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:366085..369095- >mRNA_C-linearis_contig109.1127.1 ID=mRNA_C-linearis_contig109.1127.1|Name=mRNA_C-linearis_contig109.1127.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at C-linearis_contig109:366085..369095- (Chordaria linearis ClinC8C monoicous)back to top |