mRNA_C-linearis_contig109.1120.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1120.1
Unique NamemRNA_C-linearis_contig109.1120.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: D8LKV1_ECTSI (Coiled-coil domain-containing protein 94 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV1_ECTSI)

HSP 1 Score: 459 bits (1180), Expect = 1.270e-155
Identity = 275/331 (83.08%), Postives = 289/331 (87.31%), Query Frame = 3 
Query:  360 MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVKYRSRHKGFRSGEKAKMAFITGESIFGPGSESSDQARRKAVLVKAAKLGIKTRGMRLLRP----AVGGGVRAAGRRVEG-----SRPSRGTRNSGVSAEQLAQVPD 1325
            MSTLAAARADNMYYPPEWRPEYGGISKFQGS GHNQYEKYGKIRFELP HGWCLGCGRHIGRGTRFNATK+Q+GTYYSTKIWQFSMKCPSCS VMVIKTDPKNT YEYVEGIRKKDM FDPEEAETQRVQDSEVSK+L VDPLYRLEHEQ DKRRAASRKTVLTRL ELADAH +DDY+SNA LRQ MRA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR VKYRSRHKGFR+GEKAKMA ITGESIFG G ESS+QARRKAVLVKA+KLG+KTRGMRLLRP      G G RAA +R        S  SRG+  SG SA + ++ PD
Sbjct:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKKDMEFDPEEAETQRVQDSEVSKQLAVDPLYRLEHEQRDKRRAASRKTVLTRLTELADAHAQDDYSSNARLRQTMRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSVKYRSRHKGFRTGEKAKMAAITGESIFGSGRESSEQARRKAVLVKASKLGLKTRGMRLLRPDQGSRCGDGERAATQRAPSRSLGASSCSRGSI-SGASACRHSEAPD 330
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: A0A835Z9T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T3_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.220e-68
Identity = 116/253 (45.85%), Postives = 157/253 (62.06%), Query Frame = 3 
Query:  360 MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVK--YRSRHKGFRSGEKAKMAFITGESIF 1112
            MS+LAA +AD  YYPP W P++G +SK  GSKG NQYE+YG IRFELP + WC GCGR +G+GTRFNA KE++G Y++T +W F M+CPSCST  VIKTDPKN+DYE+  GIR+K+  FD E+AE   + D +   +L  DP+YRLEH  +D RRA ++KT +TRL + ++     DY +NA LR+  R  +                             AR +   + SR +  R+ EK+++A I   SIF
Sbjct:    1 MSSLAAVQADGFYYPPTWEPKHGSVSKAAGSKGSNQYEQYGVIRFELPYNAWCEGCGRPLGKGTRFNAKKEKAGAYFTTTVWAFHMRCPSCSTEFVIKTDPKNSDYEFSAGIRRKEQHFDAEDAEAPVLADEDTQARLATDPMYRLEHADADVRRADAKKTRITRLMDWSNDVRGSDYDANAALRRAWRGARRERVALEAEAQARGLGVELLPHSEADAAAARAMDLGHSSRLRTMRATEKSRLAAIRASSIF 253
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: A0A7S3H3M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3M3_9STRA)

HSP 1 Score: 210 bits (535), Expect = 6.190e-62
Identity = 105/195 (53.85%), Postives = 134/195 (68.72%), Query Frame = 3 
Query:  360 MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKC--PSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVV-DPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARK 935
            MS+LAAARADN Y+PPEW P+ GGISKFQGSKG NQYE+ G IRFELP  GWCLGCG H+ +G RFNA KE+ G Y++T+IW F MKC   SC+    I TDPKN  Y++ EGIRK +  F P+  ++  V  S+ +K+L+  DP++RL+H + D++R  S K  L  L EL D H ++ Y  NA LR   R RK
Sbjct:    1 MSSLAAARADNFYFPPEWTPQMGGISKFQGSKGANQYEQKGIIRFELPFDGWCLGCGVHMTKGLRFNAKKEKEGKYFTTQIWSFHMKCFSTSCTQKYKILTDPKNCTYDFAEGIRKHEQDFTPDVDDSLIVATSDETKQLIANDPMFRLQHNEEDRKRVLSAKEHLEALTELQDEHHKNYYDVNAMLRNKNRKRK 195
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: A0A482S855_9ARCH (DUF572 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S855_9ARCH)

HSP 1 Score: 197 bits (502), Expect = 2.110e-57
Identity = 97/186 (52.15%), Postives = 125/186 (67.20%), Query Frame = 3 
Query:  360 MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGKIRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQ-RVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLR 914
            MS+LAA+RADN YYPPEWRPE GGISKFQGSKG NQYE+YG IRFELP   WCL C RH+G+G RFNA K+++G Y+ST IW+F  KC SC    VI+T+P+++ Y+YVEG+RK +    P+EA+    V   EV  K   D ++RLE      ++  + K  L  L +L     + DYA N+ LR
Sbjct:    1 MSSLAASRADNFYYPPEWRPEMGGISKFQGSKGKNQYEQYGIIRFELPFDAWCLKCKRHMGKGLRFNAKKDKAGKYFSTTIWEFKTKCYSCDQKFVIRTNPQDSTYDYVEGLRKHEQDAKPDEADGSIEVLSDEVKMKAATDAMFRLERGTETSQQVRTAKQRLEDLEDLQAEVYKQDYAMNSLLR 186
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: C5YGN5_SORBI (Uncharacterized protein n=26 Tax=Poaceae TaxID=4479 RepID=C5YGN5_SORBI)

HSP 1 Score: 198 bits (503), Expect = 6.160e-56
Identity = 117/274 (42.70%), Postives = 147/274 (53.65%), Query Frame = 3 
Query:  360 MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVKYRSRHKGFRSGEKAKMAFITGESIFGPGSESSDQARRKAVL 1160
            MS+LAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P + WC GC   I +G RFNA K+Q G YYSTKIW F+MK P C   +VI+TDPKNT+Y  + G +KK   FD E+AET  +   E   KL  DP+YRLEH++ D R+    + VL RL  L+D+   DDYA N  LR  +R++K                             A  VK+ SR   F    K K A I   SIF   S S+   +   VL
Sbjct:    1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQ--HALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHEIVIQTDPKNTEYVIISGAQKKTEDFDVEDAETLLLPADEDRDKLA-DPMYRLEHQEEDLRKKKEAEPVLVRLQRLSDSRHSDDYALNRALRDRLRSQKKRVAEEKKSARKMGLGVRLLPPSAADAAAAASVKFASR---FEKNRKDKRAAIKAASIFPESSSSASNCKLDLVL 268
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: A0A2J6LV87_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6LV87_LACSA)

HSP 1 Score: 195 bits (495), Expect = 1.750e-54
Identity = 114/268 (42.54%), Postives = 147/268 (54.85%), Query Frame = 3 
Query:  363 STLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVKYRSRHKGFRSGEKAKMAFITGESIFGPGSESSDQAR 1145
            STLAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P H WC GC   I +G RFNA K+Q G YYSTKIW F+MK P C  V+VI+TDPKN +Y  + G +KK   F+PE+AET  +Q  E   KLV DP YRLEH++ D ++    + +L RL +++D+   DDY+ N  LR  +R++K                             A+ VK+ S    F      K A I   SIF  G  SS+  R
Sbjct:   30 STLAAARADNFYYPPEWEPKKGGLNKFNGQ--HALRERARKLDQGILIIRFEMPYHIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAPCCKHVIVIQTDPKNCEYLVISGAQKKVEEFEPEDAETMVLQVEEEKNKLV-DPFYRLEHQEEDLKKKKEAEPLLVRLQKVSDSRHLDDYSLNKSLRAKLRSQKKRVAEEETSARKMGLGIRLLPPSEQDIVAAKRVKFSSN---FNKNRDEKRALIKSSSIFS-GVYSSNSKR 290
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: UPI001FB10B6C (probable splicing factor YJU2B n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB10B6C)

HSP 1 Score: 193 bits (490), Expect = 3.990e-54
Identity = 113/269 (42.01%), Postives = 142/269 (52.79%), Query Frame = 3 
Query:  360 MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVKYRSRHKGFRSGEKAKMAFITGESIFGPGSESSDQAR 1145
            MSTLAAARADN YYPPEW P+ G ++KF G   H   E+  K       IRFE+P H WC GC   I +G RFNA K+Q G YYSTKIW FSMK P C   +VI+TDPKN  Y  + G ++K   +D E+AET  +   E   KL  DP YRLEH++ D ++    + VL RL  ++D+   DDY+ N  LR  +R++K                             A  V++   HK F    K K A I   SIFG  S  SD  R
Sbjct:    1 MSTLAAARADNFYYPPEWTPKKGSLNKFNGQ--HALRERARKLDQGILIIRFEMPYHIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWNFSMKAPCCKNEIVIQTDPKNCAYLIISGAQQKTEVYDVEDAETFELPADEEKGKLA-DPFYRLEHQEQDLKKKKEAEPVLVRLQRISDSRHSDDYSLNKALRSQLRSQKKRVREEEGTARKIGLGVRLLPASADDAAKAASVRFP--HK-FEKNRKEKRAQINSSSIFGGSSHYSDSRR 263
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: B4F842_MAIZE (Nuclear protein-like n=1 Tax=Zea mays TaxID=4577 RepID=B4F842_MAIZE)

HSP 1 Score: 188 bits (477), Expect = 1.350e-53
Identity = 99/196 (50.51%), Postives = 124/196 (63.27%), Query Frame = 3 
Query:  360 MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMR 926
            MS+LAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P + WC GC   I +G RFNA K+Q G YYSTKIW F+MK P C   +VI+TDPKNT+Y  + G +KK   FD E+AET  +   E   KL  DP+YRLEH++ D R+    + VL RL  L+D+   DDYA N  LR  +R
Sbjct:    1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQ--HALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHEIVIQTDPKNTEYVIISGAQKKTEDFDVEDAETLLLPADEDRDKLA-DPMYRLEHQEEDLRKKKEAEPVLVRLQRLSDSRHSDDYALNRALRDRLR 193
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: A0A2K1ZFN2_POPTR (Uncharacterized protein n=11 Tax=Saliceae TaxID=238069 RepID=A0A2K1ZFN2_POPTR)

HSP 1 Score: 191 bits (485), Expect = 2.940e-53
Identity = 114/279 (40.86%), Postives = 150/279 (53.76%), Query Frame = 3 
Query:  360 MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGK-------IRFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVKYRSRHKGFRSGEKAKMAFITGESIFGPGSESSDQARRKAVLVKAAK 1175
            MS+LAAARADN YYPPEW P+ GG++KF G   H   E+  K       IRFE+P + WC GC   I +G RFNA K+Q G YYSTKIW F+MK   C   +VI TDPKN +Y  + G ++K+  FD E+AET  +   E   KL  DP YRLEH++ D ++    + VL RL  ++DA   DDYA N  LR  MR+ K                             A  VK+ S+   F    K K A I+  SIF PGS  S  + +K + +++ +
Sbjct:    1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQ--HALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEIVIHTDPKNCEYVIISGAQRKNEEFDVEDAETFALPADEEKGKLS-DPFYRLEHQEEDLQKKKEAEPVLVRLQRVSDARHSDDYALNKALRARMRSHKKRVAEEESTSRKMGLGIRLLPATEEDAVSAAHVKFSSK---FDKNRKDKRALISAASIF-PGSSGSSMSNKKRLELESKR 272
[Close]
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Match: A9U1T6_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U1T6_PHYPA)

HSP 1 Score: 192 bits (488), Expect = 4.240e-53
Identity = 101/203 (49.75%), Postives = 125/203 (61.58%), Query Frame = 3 
Query:  348 TAATMSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGKI-------RFELPVHGWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTDPKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQSDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARK 935
            T +TMSTLAAARADN YYPPEW P+ GG++KF G   H   E+  KI       RFE+P H WC GCG  I +G RFNA K+Q G YYSTKIW F MK P C   +VI+TDPKNT Y  + G ++K + +D  +AE   + + E   KL  DP Y+LEHE  D  +A  +  +L RL E AD    D YA N  LR  +RA+K
Sbjct:   39 TGSTMSTLAAARADNFYYPPEWTPDQGGLNKFNGQ--HALRERAKKIDQGILVIRFEMPYHIWCGGCGHMIAQGVRFNAEKKQVGNYYSTKIWSFKMKAPCCGQEIVIQTDPKNTLYVIISGAKEKTVTYDEVDAEAVLLPEKEDRGKLA-DPFYKLEHEGEDTAKAKKQAPLLVRLQEAADRKHSDSYARNKALRAQLRAQK 238
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKV1_ECTSI1.270e-15583.08Coiled-coil domain-containing protein 94 n=2 Tax=E... [more]
A0A835Z9T3_9STRA1.220e-6845.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3H3M3_9STRA6.190e-6253.85Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482S855_9ARCH2.110e-5752.15DUF572 domain-containing protein (Fragment) n=1 Ta... [more]
C5YGN5_SORBI6.160e-5642.70Uncharacterized protein n=26 Tax=Poaceae TaxID=447... [more]
A0A2J6LV87_LACSA1.750e-5442.54Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
UPI001FB10B6C3.990e-5442.01probable splicing factor YJU2B n=2 Tax=Impatiens g... [more]
B4F842_MAIZE1.350e-5350.51Nuclear protein-like n=1 Tax=Zea mays TaxID=4577 R... [more]
A0A2K1ZFN2_POPTR2.940e-5340.86Uncharacterized protein n=11 Tax=Saliceae TaxID=23... [more]
A9U1T6_PHYPA4.240e-5349.75Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:330411..334910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score465.3
Seed ortholog evalue2.7e-128
Seed eggNOG ortholog2880.D8LKV1
KEGG koko:K13115
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to virus
EggNOG OGsCOG5134@1,KOG2990@2759
Ec32 ortholog descriptionCWC16 protein
Ec32 orthologEc-11_005670.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons4
Model size1477
Cds size1116
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1120.1prot_C-linearis_contig109.1120.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 330770..334910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927419.606727-UTR-C-linearis_contig109:330410..3307691622927419.606727-UTR-C-linearis_contig109:330410..330769Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 330411..330769 +
1690879691.094872-UTR-C-linearis_contig109:330410..3307691690879691.094872-UTR-C-linearis_contig109:330410..330769Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 330411..330769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927419.6177135-CDS-C-linearis_contig109:330769..3309551622927419.6177135-CDS-C-linearis_contig109:330769..330955Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 330770..330955 +
1690879691.1096609-CDS-C-linearis_contig109:330769..3309551690879691.1096609-CDS-C-linearis_contig109:330769..330955Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 330770..330955 +
1622927419.6256597-CDS-C-linearis_contig109:332861..3330931622927419.6256597-CDS-C-linearis_contig109:332861..333093Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 332862..333093 +
1690879691.121304-CDS-C-linearis_contig109:332861..3330931690879691.121304-CDS-C-linearis_contig109:332861..333093Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 332862..333093 +
1622927419.6418219-CDS-C-linearis_contig109:333913..3341041622927419.6418219-CDS-C-linearis_contig109:333913..334104Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 333914..334104 +
1690879691.1325006-CDS-C-linearis_contig109:333913..3341041690879691.1325006-CDS-C-linearis_contig109:333913..334104Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 333914..334104 +
1622927419.653679-CDS-C-linearis_contig109:334403..3349101622927419.653679-CDS-C-linearis_contig109:334403..334910Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 334404..334910 +
1690879691.140579-CDS-C-linearis_contig109:334403..3349101690879691.140579-CDS-C-linearis_contig109:334403..334910Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 334404..334910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1120.1

>prot_C-linearis_contig109.1120.1 ID=prot_C-linearis_contig109.1120.1|Name=mRNA_C-linearis_contig109.1120.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=372bp
MSTLAAARADNMYYPPEWRPEYGGISKFQGSKGHNQYEKYGKIRFELPVH
GWCLGCGRHIGRGTRFNATKEQSGTYYSTKIWQFSMKCPSCSTVMVIKTD
PKNTDYEYVEGIRKKDMAFDPEEAETQRVQDSEVSKKLVVDPLYRLEHEQ
SDKRRAASRKTVLTRLAELADAHGEDDYASNAGLRQGMRARKKKEREREE
EATSKGLGIRLATPSPADAAAARGVKYRSRHKGFRSGEKAKMAFITGESI
FGPGSESSDQARRKAVLVKAAKLGIKTRGMRLLRPAVGGGVRAAGRRVEG
SRPSRGTRNSGVSAEQLAQVPDVGAGGSTRRQKSPRPSGTGGAGEVAGFG
IPQGLEGGVVAGAATGGEFEVA
back to top

mRNA from alignment at C-linearis_contig109:330411..334910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1120.1 ID=mRNA_C-linearis_contig109.1120.1|Name=mRNA_C-linearis_contig109.1120.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4500bp|location=Sequence derived from alignment at C-linearis_contig109:330411..334910+ (Chordaria linearis ClinC8C monoicous)
CCCGTGTTGCATCAGGCGGCAGAGACGATAATAGGGAGAGGACGACAGGA
CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCGTGGAGCGTAGCAGCCA
GAGATCAGGATAGCTAGAGGGGCCTCGGGTATCGTTTGGTTTGTTCGGTC
CCGCTGCAGCTGAGAGGCAAAGCTCTTTGTGCCTCTTTTGAGGCCGGTTC
CAAGGCGCACCCGCACACGCACCCTAAAAGCACGGTGGAGCCGGGGGACA
AGAAGAGCGCTCCAGCAGAGAAGGGGGGGGGAGGGACACCACACCACACC
ATACCAAAGAGTCGTAGCATTGTCTTTTATTTTGTGGGGATTCTTCTACC
GCTGCAACCATGTCGACGCTCGCGGCAGCTCGCGCTGACAACATGTACTA
CCCGCCGGAATGGCGGCCGGAGTACGGAGGCATCTCCAAGTTCCAGGGTT
CGAAGGGACACAACCAGTACGAGAAGTACGGCAAGATTCGCTTCGAGCTG
CCGGTTCACGGGTGGTGCCTCGGCTGCGGGCGACATATTGGCAGGGTGAG
ATTTTTAGATGGCTCAAAATCGAAATGCAAGAACCCCGAAATGTTTTTTT
TTCAAGACTTTGTCTTGTTTTTGGAGCCGTTTGTGTGTGTGCGTGTGTTT
TCGTCCCATTTATTTTGGCGACAGTCCCTTCCCATCAAGGCGAGACGTGT
ACTACACGTTGCGGTGTATTTAGAGTACTACACTTGTTCAGTTTATTTTT
CTGTACAACCAGAACCAACCGGGGTCACACAGGAGGGGGGTAAACACTGG
GGCTTTTTTCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCG
GTGCTTGCCTTGGGTTTTATCGCGAGAAGGGTGGGCCATCGCTTTCCCTC
GTCAACGTGCTAAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGCTATCA
TAGCTATGTTATCGCTTTCACCTGCAAAGTAGCAAAATAAACACCTTTGC
TTGGAATTGAACTCCAGACTTTGCTGCTAGTGGGTTCGAGGTTAAACCAC
CATTACAGTCCACCGGGGCGACCGGCTACCCGTGGTCACTGGCTTTCACT
GCACTACACTGCTGTGGGTGTTTTTGTAGTCCTACACCAAAATCTACGCA
ATAGCCGGTCGCCCCGGTGGCCTAGTGTTTTAACCTCGAACCCACTAGCA
GCAAAGTCTGGAGTCTGGAGTTCAATTCCAAGCAAAGGTGATTATTTTGC
GACTTTGCCGGTGAAAGCGATAACATAGCTGAAAAAGCTCGTGAGTACCA
AACTTCGACTTAGCACGTTGACGAGGGAAAGGGATGGCTGCCCCCTTTCT
CGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAAAAG
AAACATAAAAAGAAGAAAAAAGCCCCAGTGTTTACCCCCTCCTGTGTGAC
CCCGGTTGGTTCTAGTTGTACAGAAAAATACACTGAACAAGTGTAGTACT
CTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTGATCGGAAAGGGA
CTGTCGCCAAAATAAATGGGACGAAACCACACACACACACAAAAACATTC
CAAAATCTACGCAGAGTTGCCCATCAAGCCTGCAACACCACTGGTAGAAC
ACGAAAAATTGAAATGAACCCGCTTCCAGGCACTGCCTTTTTTCTTTTCT
TGTGGGGCGTTATGTTTTCGTGTATATTCTGTACAGCAGTATTGTACCAG
TACCGTCAGTGTGTGTCACTGCTGTACCAGTCTATATGTATCAAATGCTC
CCGTAGTTGCACAAATCATCAATCATCAATAAATACAAATACATAATGGG
CGCGTTCTTGGGACAAAAAATAACTAAACGACTTTCACGCGCTACACGCA
GCTTGTCAGCTGGATTTGCCCTGTTTGTACTCTGACTCATACCCAAAGGC
TGTGTTCAAGTCTGAGTGGATGGCTTAACGATCTGGTACCACATGGGGGG
GCCGCCCGCAGCCGATACAATACCGCATCACGGACGAGACCGAAATACCA
CACTCCTCCCGGTGTTGTAACTTTGGTGAATGCATGTCGCGGAGCACGTC
CGGTGTTAATCACCACGTCATTTCCTGGAACACCCCGTGGAAGTCTCGTC
ACTTCCCCCCTTGGAGCAACACGCACTAAAATCACCTCAACATATAGGCA
GATTACCATTGTAACGCCCCCCACCATCGCAATGCACGCCCCCTGCCCAG
AAATGTAACAACTGGAGCAGTAGACTAGCTTTATCCAACTTCGGCAAGCT
GCAATACACGGTACACCAACCATCGACCTCACCTCCGCCACCGCCCGCCC
GCCCGCCCGCCCACGCCCATCTCGTGTTCTTCTTTCGAACACCCCCCCCC
GTGATGCCCCCCCCCGTGATGATGTCTCTTTGGAACCCGCACACCTCACA
GGGGACGCGGTTCAACGCGACCAAAGAGCAGTCGGGCACCTACTACAGCA
CCAAGATCTGGCAGTTCTCCATGAAGTGCCCCTCGTGCAGCACGGTGATG
GTCATCAAGACGGACCCCAAGAACACGGATTACGAGTACGTGGAGGGCAT
CCGCAAGAAGGACATGGCCTTCGACCCGGAGGAGGCGGAGACCCAGCGGG
TACAGGACAGCGAGGTCTCCAAAAAACTTGTAGGCATGTATAGTGCGTGT
TTTAAACATGGGTGCCTGCTGCGTTAGGCCGAGCTCTGGTGGCCGTCTCC
AATGAACATTAACGTTCCTGCTGCGTTGTGCCGGCGAAGAGAGAGCGAAT
TCGTACGATATGTACCAGACGGCCCCGGCACGTGCCCACATGGGGCATTT
ACATACTCTCTATGGCTTTGCCTCAACCCGCAGGAATGTCAGAATCAGAA
GTTCTGTGGAGGGTCGGGCGGTCGAGCACGAGACGCCTACGCATCCCCTC
TCGTCGTTGGTGCGCTATTTGGCTCGAGTCGGCTGAGCCTCAAGCACGAA
ATTTTAATCTTGGTTGGGTGCGCACAGCAACCAACAACAACACAACTGGC
CTTGACACGTGTTTGCGGATGTGTTTTTCTTCAGCCGTGAGTAGCAAGTC
GGACGGGTATTGTCCGGGAATCGGATGGCGGCCGTGTGGCGCACGCGAGC
GAGCAAGCTCCGCACCTGCGCCGTTATCATCTCCCACGCCCCTTGTCAAC
CGTGGTCTCTGTTCACGTTATACGTACTCCACATTCAAACAAACGCATAC
GATACCGTACATGCGTACCCTTCTCACCTCTGGCACTTTTATCAAAGCTA
CAGCTACCGTGCGCTCTCTCCGGGACAGGGCAGTGGTGGTTGCCACCATC
CCCGGACGCGACAAACCTACCTCCACCTCGCGATGCTTCCTCCTCCCCCC
CCTCCCCACCGTACCTGCCTACTGTACACTTTAAACCGTTTCCCCTCTTG
TTCCCGCCTGTACTCTCTCGGCTGTTTCTGGATGGCTGACGAACGTTTCG
CAGTCGATCCTCTCTACCGGCTCGAGCACGAGCAGTCGGACAAGCGACGG
GCCGCCTCGCGGAAGACCGTGCTGACGCGGCTCGCGGAGCTGGCGGACGC
CCACGGAGAGGACGACTACGCCTCCAACGCGGGGCTGCGGCAGGGGATGC
GCGCTCGGAAGAAGAAGGAGCGCGAGAGGGAGGAGGAAGCAACGGTGGGT
CCAGGGCTTCAGCGGGAGGACCTGCGGTGTTAATGAATGCAGGGGGTGAA
TCGCACCGACACCGTGGCAGCAGATATGAACAGTCGGCACTTTCTAGCAG
CAGCGGCAGCGTGCAAAGTGTTCAGCCCCGACACACTCAGCGTCGGTCTT
CGGAAACACCCATCGGAGACTTGCGGTCAGTTTGGGATGGCTTGATGTTG
GATTCACCACGCACTTGTTTGTGACGAAACATCAACAAGCCCCCCCCCCC
GCCACACCCGCTGTCTCCACCCGTCACGTCGCCCCGCCCCCAGTCGAAAG
GGCTAGGGATACGCCTCGCGACCCCGAGCCCCGCCGACGCGGCCGCCGCC
CGCGGCGTCAAGTACCGCAGCCGGCACAAGGGCTTCCGGTCGGGAGAGAA
GGCGAAGATGGCGTTCATCACGGGCGAGTCCATCTTCGGGCCGGGCAGCG
AGTCCTCGGACCAGGCCCGCCGCAAGGCCGTGCTCGTCAAGGCCGCCAAG
CTCGGCATCAAGACGAGAGGGATGCGCTTGCTCCGGCCTGCTGTTGGCGG
CGGCGTTCGGGCGGCGGGGCGACGGGTAGAGGGTTCCCGGCCCTCCCGGG
GAACGAGAAATAGCGGGGTTTCTGCCGAGCAGCTCGCTCAGGTTCCAGAC
GTTGGAGCAGGTGGTAGCACCCGGAGGCAGAAAAGCCCGAGACCATCGGG
AACGGGGGGCGCGGGGGAAGTTGCCGGGTTCGGGATCCCACAAGGGTTAG
AGGGGGGCGTTGTTGCCGGGGCTGCCACGGGGGGTGAGTTTGAGGTTGCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig109:330411..334910+

>mRNA_C-linearis_contig109.1120.1 ID=mRNA_C-linearis_contig109.1120.1|Name=mRNA_C-linearis_contig109.1120.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2232bp|location=Sequence derived from alignment at C-linearis_contig109:330411..334910+ (Chordaria linearis ClinC8C monoicous)
ATGTCGACGCTCGCGGCAGCTCGCGCTGACAACATGTACTACCCGCCGGA
ATGGCGGCCGGAGTACGGAGGCATCTCCAAGTTCCAGGGTTCGAAGGGAC
ACAACCAGTACGAGAAGTACGGCAAGATTCGCTTCGAGCTGCCGGTTCAC
GGGTGGTGCCTCGGCTGCGGGCGACATATTGGCAGGATGTCGACGCTCGC
GGCAGCTCGCGCTGACAACATGTACTACCCGCCGGAATGGCGGCCGGAGT
ACGGAGGCATCTCCAAGTTCCAGGGTTCGAAGGGACACAACCAGTACGAG
AAGTACGGCAAGATTCGCTTCGAGCTGCCGGTTCACGGGTGGTGCCTCGG
CTGCGGGCGACATATTGGCAGGGGGACGCGGTTCAACGCGACCAAAGAGC
AGTCGGGCACCTACTACAGCACCAAGATCTGGCAGTTCTCCATGAAGTGC
CCCTCGTGCAGCACGGTGATGGTCATCAAGACGGACCCCAAGAACACGGA
TTACGAGTACGTGGAGGGCATCCGCAAGAAGGACATGGCCTTCGACCCGG
AGGAGGCGGAGACCCAGCGGGTACAGGACAGCGAGGTCTCCAAAAAACTT
GTAGGGGACGCGGTTCAACGCGACCAAAGAGCAGTCGGGCACCTACTACA
GCACCAAGATCTGGCAGTTCTCCATGAAGTGCCCCTCGTGCAGCACGGTG
ATGGTCATCAAGACGGACCCCAAGAACACGGATTACGAGTACGTGGAGGG
CATCCGCAAGAAGGACATGGCCTTCGACCCGGAGGAGGCGGAGACCCAGC
GGGTACAGGACAGCGAGGTCTCCAAAAAACTTGTAGTCGATCCTCTCTAC
CGGCTCGAGCACGAGCAGTCGGACAAGCGACGGGCCGCCTCGCGGAAGAC
CGTGCTGACGCGGCTCGCGGAGCTGGCGGACGCCCACGGAGAGGACGACT
ACGCCTCCAACGCGGGGCTGCGGCAGGGGATGCGCGCTCGGAAGAAGAAG
GAGCGCGAGAGGGAGGAGGAAGCAACGTCGATCCTCTCTACCGGCTCGAG
CACGAGCAGTCGGACAAGCGACGGGCCGCCTCGCGGAAGACCGTGCTGAC
GCGGCTCGCGGAGCTGGCGGACGCCCACGGAGAGGACGACTACGCCTCCA
ACGCGGGGCTGCGGCAGGGGATGCGCGCTCGGAAGAAGAAGGAGCGCGAG
AGGGAGGAGGAAGCAACGTCGAAAGGGCTAGGGATACGCCTCGCGACCCC
GAGCCCCGCCGACGCGGCCGCCGCCCGCGGCGTCAAGTACCGCAGCCGGC
ACAAGGGCTTCCGGTCGGGAGAGAAGGCGAAGATGGCGTTCATCACGGGC
GAGTCCATCTTCGGGCCGGGCAGCGAGTCCTCGGACCAGGCCCGCCGCAA
GGCCGTGCTCGTCAAGGCCGCCAAGCTCGGCATCAAGACGAGAGGGATGC
GCTTGCTCCGGCCTGCTGTTGGCGGCGGCGTTCGGGCGGCGGGGCGACGG
GTAGAGGGTTCCCGGCCCTCCCGGGGAACGAGAAATAGCGGGGTTTCTGC
CGAGCAGCTCGCTCAGGTTCCAGACGTTGGAGCAGGTGGTAGCACCCGGA
GGCAGAAAAGCCCGAGACCATCGGGAACGGGGGGCGCGGGGGAAGTTGCC
GGGTTCGGGATCCCACAAGGGTTAGAGGGGGGCGTTGTTGCCGGGGCTGC
CACGGGGGGTGAGTTTGAGGTTGCCTCGAAAGGGCTAGGGATACGCCTCG
CGACCCCGAGCCCCGCCGACGCGGCCGCCGCCCGCGGCGTCAAGTACCGC
AGCCGGCACAAGGGCTTCCGGTCGGGAGAGAAGGCGAAGATGGCGTTCAT
CACGGGCGAGTCCATCTTCGGGCCGGGCAGCGAGTCCTCGGACCAGGCCC
GCCGCAAGGCCGTGCTCGTCAAGGCCGCCAAGCTCGGCATCAAGACGAGA
GGGATGCGCTTGCTCCGGCCTGCTGTTGGCGGCGGCGTTCGGGCGGCGGG
GCGACGGGTAGAGGGTTCCCGGCCCTCCCGGGGAACGAGAAATAGCGGGG
TTTCTGCCGAGCAGCTCGCTCAGGTTCCAGACGTTGGAGCAGGTGGTAGC
ACCCGGAGGCAGAAAAGCCCGAGACCATCGGGAACGGGGGGCGCGGGGGA
AGTTGCCGGGTTCGGGATCCCACAAGGGTTAGAGGGGGGCGTTGTTGCCG
GGGCTGCCACGGGGGGTGAGTTTGAGGTTGCC
back to top