mRNA_C-linearis_contig109.1111.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1111.1
Unique NamemRNA_C-linearis_contig109.1111.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: D8LKT4_ECTSI (DUF202 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKT4_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 1.620e-109
Identity = 212/317 (66.88%), Postives = 229/317 (72.24%), Query Frame = 2 
Query:  221 MSSLVHRRKGGSLD-GGKKTIAVRYGDREHLVSWFAGASDESITRTIEIALGLPRGTPAVIRDPEDGSALAVSDSLPDGLTLDATPAAATAAVATAVLGGNVGEGGHATKRGSSSIKRVGGGSGAADDSRSGRRRSEDGFHGSXXXXXXXXXXHSNGKSLHGGGDGSIGNNXXXXXXXXXEXRXGAAQEFRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIYLMAGVNVVEDA 1168
            MSSL HR  GG+LD G KK I VRY  REH VSWFAGASDE+ITRTIE+AL LPRGTPAV+RDPEDGSALAVSDSLPDGLT+DAT   A                                 SG  +D    RRR+E   +G           +S+ K  H     S G   XXXXXXXX X X AA EFRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGS +MDSTA+ALGVAFV CTLFTYMTGWLRY RVKEVLTWTGSQVKG+FGRFGL+YFTWFLG +LVLTVP+Y +AGVNVVEDA
Sbjct:    1 MSSLRHRT-GGTLDVGSKKAITVRYEGREHAVSWFAGASDEAITRTIELALRLPRGTPAVVRDPEDGSALAVSDSLPDGLTVDATAVPAC--------------------------------SGGDND----RRRAESSGNGFYGRGESGNNKNSDAKPAH----DSAGGIGXXXXXXXXXXXXXAAHEFRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSATMDSTAMALGVAFVACTLFTYMTGWLRYTRVKEVLTWTGSQVKGRFGRFGLKYFTWFLGASLVLTVPVYFIAGVNVVEDA 276
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: A0A7S2Y0E1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.850e-32
Identity = 96/289 (33.22%), Postives = 137/289 (47.40%), Query Frame = 2 
Query:  269 KKTIAVRYGDREHLVSWFAGASDESITRTIEIALGLPRGTPAVIRDPEDGSALAVSDSLPDGLTLDATPAAATAAVATAVLGGNVGEGGHATKRGSSSIKRVGGGSGAADDSRSGRRRSEDGFHGSXXXXXXXXXXHSNGKSLHGGGDGSIGNNXXXXXXXXXEXRXGAAQEFRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIY 1135
            KK+  + +G ++  ++WF GA+D S+ R +  A  LP  +  ++ DP DG  +A+S++LP GL L+                       H   +G  +  + G    +A + R   +                         L  G D S                    ++FRGELLKFERVNAHLANERT+LAWVRTALSVL  A S+ SLT+D    +        G  +V+  LFTY TGW+RY++V+ +L    S+VK +FGRFGL +   FL    + T   Y
Sbjct:   10 KKSAVLAFGQKKESITWFPGATDASLHRLVLDAFSLPLHSRFLLVDPADGCIVALSENLPSGLVLNVQ---------------------HVQTQGRDTPAKEGQAYTSAREDRDSEKSG----------------------GLESGDDESS-----------------TGKKFRGELLKFERVNAHLANERTFLAWVRTALSVLSSAFSIDSLTEDFSDGAFKVMVFIFGCLYVVGVLFTYTTGWVRYSQVRAILGLPASKVKAQFGRFGLSHVAKFLAFLFLFTAIGY 238
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: A0A7S3YD22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD22_HETAK)

HSP 1 Score: 120 bits (301), Expect = 7.250e-27
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 2 
Query:  779 QEFRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIY 1135
            QEF+GELLKFERVNAHLANERTWLAWVRTAL+VL  A + + LT+D  S +       LG  ++   L TY TGWLRYA+V+E+L   GS +K KF RFGL +   +L   L++T   Y
Sbjct:  118 QEFQGELLKFERVNAHLANERTWLAWVRTALAVLSSAFTFLGLTEDFASGT-QIFVFVLGGFYIGNVLLTYGTGWLRYAQVREILGLPGSMIKPKFNRFGLSHQARYLAVLLLVTGVSY 235
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: A0A7S2FKJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKJ2_9STRA)

HSP 1 Score: 118 bits (296), Expect = 9.330e-27
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 2 
Query:  785 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEY 1087
            FRG++LKFERV AHLANERTWLAWVRTALS L +A SL++L+DD  S S       +G   V   LFT++TGWLRY RVK+VL  T S++   FGRFGL +
Sbjct:   91 FRGQVLKFERVQAHLANERTWLAWVRTALSALTIAFSLLTLSDDASSAS-QLALFVMGSCMVANVLFTFVTGWLRYVRVKDVLMLTRSEMSENFGRFGLSH 190
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: A0A7S2WVC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVC3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.440e-25
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 2 
Query:  785 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIYL 1138
            FRG++LKFERV AHLANERTWLAWVRTAL+ L ++ +L++L+DD     +      +G   V+  LFT++TGWLRY RVK+VL     ++  +FGRFGL +   FL   LV     YL
Sbjct:  115 FRGQVLKFERVQAHLANERTWLAWVRTALAALSISFTLLTLSDDATKDWLALFLFVVGCLMVVNVLFTFITGWLRYVRVKDVLMLRKQEMSDEFGRFGLSHHARFLSALLVAISIAYL 232
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: A0A7S2GM95_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GM95_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.490e-25
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 2 
Query:  773 AAQEFRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIYLMAGVNVVE 1162
            A+  FRG++LKFERV AHLANERTWLAWVRTALS L +A SL++L+D+     +  T   +G   V   L T++TGWLRY RVK+VL      +   FGR GL +   FL   L +    Y+  G + + 
Sbjct:   63 ASMAFRGQVLKFERVQAHLANERTWLAWVRTALSALSIAFSLLTLSDESTKQWLKVTLFVVGSLMVANVLMTFVTGWLRYVRVKDVLMLDKQDMSANFGRLGLSHQARFLSLLLFVISFAYITGGSHDIS 192
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: A0A7S2G4H1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4H1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 9.860e-23
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 2 
Query:  785 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIYLMAGVN 1153
            F+ ++LKF+R+NAHLANERTWLAW+RT  S+L   L+L +  +D  S +      A+G A ++   FTYMTGW+RY +VKE+L      +  K GR  L+Y T+ + G L     +Y M G +
Sbjct:   58 FQKQMLKFDRINAHLANERTWLAWIRTTFSLLSCGLTLQTYANDSSSGTWHWWLFAVGCATIVSMDFTYMTGWIRYGKVKEILQQNKEVLGPKMGRLKLKYQTFLVFGTLCTVAVVYWMGGYD 180
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: A0A7S3K4A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4A5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.380e-22
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 2 
Query:  785 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIYLMAG 1147
            FR +L+KFE + AHLANERT+LAW+RTAL+ L ++ SL++L  D     + +   ALG AFV     T++TGWLR+AR++++L    +QV   F R GL +  +F+     L   +YL+ G
Sbjct:   82 FRRQLIKFENIQAHLANERTFLAWIRTALASLSISFSLLALVADASKNWLAACLYALGAAFVFSVFTTFLTGWLRFARIRDILMLAQNQVPTDFHRIGLSHQAYFIAILCGLLTFLYLVGG 202
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: F0YI70_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI70_AURAN)

HSP 1 Score: 103 bits (258), Expect = 1.710e-21
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 2 
Query:  785 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIYLMA 1144
            FR +L+KFE + AHLANERTWLAWVRT+LS L VA SL++L  D   + +      LG  F++     ++TGWLRYAR+++VL  T  +V   F R G+ +    +G   +     YL A
Sbjct:   88 FRKQLIKFENIQAHLANERTWLAWVRTSLSALSVAFSLLTLVGDSRESWLAVVLFLLGSGFIVSVFTAFLTGWLRYARIRDVLMLTKREVPAHFHRIGVRHQARLMGLLFIFLTATYLCA 207
[Close]
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Match: A0A7S2DFA2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFA2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.180e-16
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 2 
Query:  782 EFRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALAL---GVAFVLCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVLTVPIYLMAG 1147
            +F+ + +KFERV +HLANERTWLAW+R AL++L  A ++  L D +      + +LAL   G+ +VL    T + GWLRY R K +L  +   +   FG  G+      LG  LV TV  Y   G
Sbjct:   98 QFQDQYVKFERVLSHLANERTWLAWIRAALTMLSSAFTIWKLYDSVNDKIHPTISLALYSLGLCYVLVVPLTVVVGWLRYERTKHILGLSKVDIHEYFGSLGVVIQAALLGSVLVFTVGCYWSLG 222
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LKT4_ECTSI1.620e-10966.88DUF202 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2Y0E1_9STRA1.850e-3233.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YD22_HETAK7.250e-2754.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2FKJ2_9STRA9.330e-2759.41Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2WVC3_9STRA1.440e-2550.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2GM95_9STRA2.490e-2546.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2G4H1_9STRA9.860e-2343.09Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3K4A5_9STRA8.380e-2242.98Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
F0YI70_AURAN1.710e-2143.33Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A7S2DFA2_9STRA5.180e-1640.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:226576..234499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.4
Seed ortholog evalue6.9e-93
Seed eggNOG ortholog2880.D8LKT4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF202)
EggNOG OGs2E55D@1,2SBZQ@2759
Ec32 ortholog descriptionDomain of unknown function DUF202
Ec32 orthologEc-11_005450.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2594
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1111.1prot_C-linearis_contig109.1111.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 226796..233076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927418.742317-UTR-C-linearis_contig109:226575..2267951622927418.742317-UTR-C-linearis_contig109:226575..226795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 226576..226795 +
1690879690.4738925-UTR-C-linearis_contig109:226575..2267951690879690.4738925-UTR-C-linearis_contig109:226575..226795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 226576..226795 +
1622927418.7789278-UTR-C-linearis_contig109:233076..2344991622927418.7789278-UTR-C-linearis_contig109:233076..234499Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 233077..234499 +
1690879690.5081246-UTR-C-linearis_contig109:233076..2344991690879690.5081246-UTR-C-linearis_contig109:233076..234499Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 233077..234499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927418.7571397-CDS-C-linearis_contig109:226795..2268931622927418.7571397-CDS-C-linearis_contig109:226795..226893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 226796..226893 +
1690879690.4905672-CDS-C-linearis_contig109:226795..2268931690879690.4905672-CDS-C-linearis_contig109:226795..226893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 226796..226893 +
1622927418.768098-CDS-C-linearis_contig109:232223..2330761622927418.768098-CDS-C-linearis_contig109:232223..233076Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 232224..233076 +
1690879690.4998744-CDS-C-linearis_contig109:232223..2330761690879690.4998744-CDS-C-linearis_contig109:232223..233076Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 232224..233076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1111.1

>prot_C-linearis_contig109.1111.1 ID=prot_C-linearis_contig109.1111.1|Name=mRNA_C-linearis_contig109.1111.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=317bp
MSSLVHRRKGGSLDGGKKTIAVRYGDREHLVSWFAGASDESITRTIEIAL
GLPRGTPAVIRDPEDGSALAVSDSLPDGLTLDATPAAATAAVATAVLGGN
VGEGGHATKRGSSSIKRVGGGSGAADDSRSGRRRSEDGFHGSSESGGNSS
SSHSNGKSLHGGGDGSIGNNGSGGGGGSGEGRGGAAQEFRGELLKFERVN
AHLANERTWLAWVRTALSVLGVALSLISLTDDMGSTSMDSTALALGVAFV
LCTLFTYMTGWLRYARVKEVLTWTGSQVKGKFGRFGLEYFTWFLGGALVL
TVPIYLMAGVNVVEDA*
back to top

mRNA from alignment at C-linearis_contig109:226576..234499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1111.1 ID=mRNA_C-linearis_contig109.1111.1|Name=mRNA_C-linearis_contig109.1111.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7924bp|location=Sequence derived from alignment at C-linearis_contig109:226576..234499+ (Chordaria linearis ClinC8C monoicous)
CTGAACACTTGAACATAAAAAAAAATAGCTAAACCAGCCCTTGTTTCCCA
CGCACACACAACACCTGCTCCACTCGGGGCCCGCTAGTGGTAGTAGGTGT
GGCAAACAAGGCGAAGGAGAAAGCTGCAGGACAGCGACGGGTGTAAAACA
CGATCCTACATCGCGACGAGGGTTACCGCCTCCTTCACGGTTTGGCTAAA
TACGGATATACTACGCCGTCATGTCCTCTCTTGTACATCGTCGGAAAGGG
GGATCTCTAGATGGCGGCAAGAAGACCATTGCCGTGCGATACGGGGACCG
AGAGCACCTTGTTTCTTGGTGAGTGCTTCGCAAGCTTGTGTGTGTGTCTT
CCTGGAGGAGGAGACTTGGTGGCAGAGGAGGTACGAGTCGTTGCCGGGGG
GGCGCCCTCCCCCCTCTTCAAGTAGACACCGTGCCGACAGCACTGATTGG
CGTGCGATGCGTTGTGCCGCAAGACGCAGTGCGTGCAGTATGTTGTGGAC
CATGTAGATACATACTGACAGGGCCTTCCATGGTTCCTCCGCCGACTTGA
CTTGCAGTGTTTGCCGAACACAAAAACGAAAAGCATTTTGCTGCGGCCGA
GATAGGGCGGACAAGAGAGGTCAGCAACATAGTAGCACTGCTGTAGTCTA
CAGCAGTAGTGCCACACGAACCGGCAGTATTGAACCTATGAAATCGTGAC
TGGCACGTTATCGTGACTGGCACGCAAGCTCTAGTGGACTCGACATCAGC
AGCGCCCGGTCACCTGGCCAGGTGACACTCTCTCGGCTATCTTGTATCTA
CAGGTATTTCGAATTTCGTGTTTAGTCTACTAAATAGCCGACCTACCTCT
GGTCGAGGCTACACTTCGCGGGTCGCTGTCCAGTCCAGTGTCTCGCGACG
TTGTTCTCCCCTCAATCCTCACTTGAAAACATACCTGTCGTGTTTGGCCT
GCTGAGGCTATTAACGGCGTATTTTCATCTTCGAAATTTGAAATTTGGAT
GTATGATGCTCCACCCGTAGACATTCGCCCCCGCTGTGAGGGTGGGCGAC
TATCATCCTGGCAGGGGTACCCTGCGGTGGACCCTGCAGTGTGTAACCTT
ATAAGGTTTGCCAAAAGGCGCCACCTTGGCAGTGCGTTATGCGGGTACCC
TGTGAGGGTTGGGGTCAGCCGAAGGCTGCACAGGTTTAGGACGCCGGTCC
CTGGTAAAGTCGTTCACACGTCTTTAAATCGCTACGTTAGGTATTTGAGC
AGTTCCCGCTGTGACCCGTAGTAGTACTGAGTCCAGTGAAGTATGCGACT
CCCACAGCAGTCAAACAGGCAAACCAACAGTGTACAGAAAAGCCCAAATA
AACGGCAACCAACTACCAATCGGAGTACATCACATACATGCCGTCAGCCC
CGGACTCCGTGCCTCTTGGCCCATAGGCGCAATGCAAAAAACATGAAAAA
TGCACAAGAAGCTACCAAGTAAAGTGTTAATGTTCACACACACGTTGTGT
GGCTGCGCGCGCCGTCGCTACCTTTGGACCTAACCAAAACATACTCGTAG
CAAAAGCTCTGCAGCTGATTATGTATGTAAAAGGCTCTGCAGCTGACCAT
GTACGTCGCACAAGTCTTCTAGAAAGAACACCTAACAACGAACAAGACCC
ACATGATGTTTCCAAACCCCGCCAGCGCATTTCCTCGGATGATGAACCGC
CTCTCACAAGCACATGGGAGAATTTTCCCTCTACTATCCCTAGGAATGCC
GATCTTACCACATCTGCAAAATGCATCGGCGCTGCCGGGCAAACCACGTA
TGTATACCCTCCATGCGCCACCCACTCACACAAGATTCGCCACAACCCTC
GCTGATACTTTCCCCCTCTGGCCTCTACGCTCTCTCAACGTATGTCTTCA
CTATACCGCCGCGCTCCTCCTCCTGAAAGGCATCCTGCTGAGCGAAGAAC
AAGAAAATGAGAAACAGGCAGAGTACTTGAGAGGTTGTGCTTGACCATGC
ACGCGCCGTGCAGCACACACCAAAGTAGTACCTCTGTTCTATGCACTCTG
TATCTCAAACTCGTAACTGGTCAAAAATGACAAGAGGCTACCCCTATGTT
TGGAGAAACAACACCATAGTTTAGAGGATATAATATATATATATACTTCG
AAGTATATGGCAGGTGAAAATGATCAAGACGACCGCAGCAGCAAAAAAAA
GGAGAACAACGCACGAGCACGAAGTCCGCAGCAACTCAGAAATCGTAAAC
GTCCAAATCGCGCAACCATTCGTGTTTAATTTATCGTTCGCACTCGATAA
CATGGAACAAACAGGAGAAATACTTGTTTTTGGGTACAAACAGAAGGTAC
AGAGTTCGAACCGGTCCTAACCTGCAATTAGTTGTAGGGCTTGATGGTGT
GCCTGCGAATCAGGGATGGCGAGATGTTGTCTTCCTGCCCCCTGGCAGCA
GGCTTTTAACCGCTCCCGTTGACATGCGCGCCACTGCCTTCTCTCTAGGT
ATCCCGTTCCCTGTGCGATGTTGAAAAACAACAACAATATACCGCAGAAA
AAAAAAATAGTGGTATAGGGGAACACGAAGGGAACACAAAAAGAGGGAAA
GGAGAGAGGCTAGAATCAAGTCAGGCTATGTATCCCACGTAAATTGAGCG
CACACTTCACAGATAAGCATGGCGGTCGTAGGTGGGAACCGAAAACACAG
AACAGTTGTATCGCTGCGCCTCTTTCCTATTCCATAGTTCACAAGGTATG
ATTCCCCTTAGGGAGTGGGTAGGCACACGAGCAACACGCACTTTCTCGGC
AACAGTTTGAAGGTCGCTGACCACTGCTCAGGCACAAAAACGAAAACTCT
ATTCCCGGAGGAGCGAAATTCTTTTTAGATATCTCTACAAAAGCGTCGGG
ACGCGCGGGGCTGAGACACAAAGAGTGCGCTTCGCACTGCAAGCAAGGGC
GAAGTGACAACCGAAAAACGAGCGCATGACAACGAGTGAGAATCAACGTC
GGTGAACCAACCGTCTCTCGCCTGAAAGGCCCCGCCGCTACAAGTAGGGA
TGGTAGGTGCAAAAACCGCTGAACGAAAACAGGTTGCACAACGAATTTTC
AGGGCCGAAATACATGATCGCTGATCCACGTCCCTCTGTACGCCCGAACC
CTCCACTGCCTTGAAAACATGTGACGAACTGAACCCCGACCGACAATATT
TCACGTCACAAATGTCTGGACATCTGTTCGGTTCCCCGTGCACGTGCGCC
TGCTGGGTGAACTGCCTACCCAACACACGCTTCTCTTCTCTTGTCACCTG
TCCCTTTACGTCGACCTGTCGCGCGAGTTGGAGCGGGGATACCTCTGCCT
TTGCCTCTGCTGCCTCCATCACGGCTGCCTCGCCTCCCCCTGTCCCTAAA
CCGCCTGCTGCTACCGCGCTATCTCTACATCTTAAGAAGTCGCGCCGGAG
CTTTCCGTCCCGGCCTCTGTTATGGGGGGACGTGGCGGTAGGGTGGGGTG
GCAAGAGCGGGAAAAACAAGAGAAAATTATCGCTACTTCGACCGGATGAG
GTGACGGAGGAGTAAATAGTAAATAGGAGACGTCCAAACCACGATCACCA
CGAACACCCACTCACATCGCTACCGACCGTGCACACAAAAAAACAATAAA
CACAAGGCCGGAGGAAGCCCGCGAAAAACAAAAGTCGACGGTGCTTCACG
CTTAGATGCCCAGCGGACAACGTCTGCCCAGAAGCAAGCAACTGTCACAC
ATGCGCACAATTGAACATTTACCCCCACCCATTGTTGGGGCCTCGCTCAT
CATGTGTTTCGCCCAACACTGAAGTGCTTGGCCCAACACTTACACAGCAG
CACGCTCCTCTAGTTACTGCGCCGCCTGCCTGATTATGTGTGAGTACCGT
CGAGGGCTAGGACGAGTTGAAAACAGTCGTGCCTCTGGTACTATTTGTGT
AACAACGCGAGACCTGTCGTCGGAATTGCCTCCCGAGAGCAAAAACAAGA
CGTGTCTGGCGGTGGCGACTTGCCATGGCAGAACAGGTTCTACAGACAAA
CTGCTGTCGGATGAGGTTAACCACTACTGCATGGAAAGACCTTCTGCTTG
TTTCGTGTCAATATAAGGTTCGTACGAAAAGCACCAGGAGGAAGAAAAAA
ACGCTTAAACACAATCAATCGGGGGGTTCCGGAGAACCTTGGTGGTACCC
GCGTGTTCTTTTGCATTACTTATCGTATTTTTTATTTTTCCGCGTGCGTG
TTTTGTGGTCTCGTCAAGAAGTACTGGCGTGGAACCTAGGTGACTGCTGT
TGGTCTTGTCCTACATAGCACACGCCACGACAATCACACGCAAAATGCTT
ACCCGGTCGAACGATGTGCTTCTTGTCGCAACACACAAACGCACACACGT
ACATCGGCAGATCTGTTTTGTGAATCAAGGGAGCGCGAGAGACAGAGAGC
GGAAAAAATGAAAAACACGACCACGCACACACGGCCTTTACCTTCCAATT
CCCTCGTTGCTACTACTCTTCACATTGGGTCACTTGCCTTGAAAGAGAAG
CCGGGATCTAAGGCTGCCGCTTTGCCCGAAGCCCTCTGTCTCTCTCGTCC
CTCCTCTTGCTGATGAGGGCTCCCAAATTGTGGCCTTCCGTGTCTACAGC
AATCGAAAGCCACCTTGGTCGTGACGGCGACGAAGGTAGACTACTCGCTG
CTTGGCTCGTCATGCTGTGGTGTGTGGGTGGATGTCGATGCACAGGCCAT
GTAGGGCTGGTGTGTGGTGTGTGCGTGGCGTGTGTAAAAGGCCAAATAAA
GGCCAAATAAAGGCCAACCGCCAACGGGGGACTCGTGTGTGAATAACCCC
CCCCCTTCTTTCCGTGAAACCAGGGGGCCGCCCCTGTTTTTTTTTTGTGC
GAAAAAGGTGAAGATCGTGTTGCGGAAAAAAACATGCACAATCAATAATC
ACAAGTATCGTTGCGCCGCCGTGTGCAATCCACCTCCTGGATTCCAGGTT
GTGGGTTGTGGGTATCGTTGTACCGCACAAGCTGGGGGCTGCGGACTCCG
TCTCAACCTACACCCGCCAACCTCGAAGGTTGTGTGTCATCCCAACGTCC
CGTAACCTGCACCTACCTCTGGCCACCTGTGAACATGCGGCATCTTTCGC
CTCTCTTTCCCGCGATGGTGTGGTACACATTCCTCCCGGGGTCCACACAC
CTGGCCAGGCTATGGTGGCCGTCTAACCTTGCCGGGGGTACCCATCGGCA
AGGTTCGGGTAGGGTAGACCTGTAAGTTCCCTCGCAGGGGGGCCGAATGG
CTACGGGTGCCAACAACGGTATCTTCCGTGGAGTCCAGTCGCGAGACCAT
CCAGTAGTCACCGCATGTATCGGATTGTTTTCCTCGGCCGGCCTTGCGCC
GCCTGTGCGAGTAAATAGCTCTGTCGCTAAAGGAATCCCCAGGCCAGACA
AGTTGGCTTCCTTTTGATGCGGAGACCGACGATGAAATATCGCAGCATAT
CCATGTGCCGATCAGCCCTGCGCTCGGGAAAAGGCCACCGACAGGTCCGC
TGGTCCTTCCCAGCGGGCACACGCGAAACGCACGCCCTGCACTCTGAAGC
ATCCATGCTGACCCCTGCCCCTCCTACCCTTCTCACGCACACACACAGGT
TTGCGGGAGCGAGCGACGAGTCCATAACTCGAACAATCGAGATCGCGCTC
GGACTCCCGCGGGGCACTCCTGCGGTGATCCGAGATCCCGAGGATGGCAG
CGCCCTCGCCGTTAGCGACTCCCTGCCCGACGGTCTCACGCTGGACGCAA
CGCCGGCTGCAGCGACAGCCGCCGTCGCGACCGCCGTGCTGGGGGGGAAC
GTGGGCGAGGGCGGCCACGCGACGAAACGGGGCAGCAGCAGTATTAAACG
AGTTGGCGGCGGCAGTGGCGCGGCGGACGATTCGAGATCAGGGAGGCGGA
GATCAGAGGACGGGTTTCACGGGAGCAGCGAGAGCGGCGGCAACAGCAGC
AGTAGCCATAGCAACGGAAAGAGCCTGCACGGTGGCGGCGACGGTAGCAT
CGGCAACAACGGCTCCGGGGGCGGCGGCGGCAGTGGGGAGGGCAGGGGGG
GCGCGGCGCAGGAGTTCCGGGGGGAGCTGCTCAAGTTCGAACGAGTGAAC
GCGCACCTCGCCAACGAGCGCACGTGGCTGGCGTGGGTCCGGACGGCCCT
CTCCGTGCTCGGGGTGGCCCTGTCCCTCATCAGCCTGACGGACGACATGG
GGTCGACGTCGATGGACTCGACCGCCCTGGCCCTCGGGGTGGCCTTCGTC
CTGTGCACGCTCTTCACGTACATGACCGGCTGGCTACGGTACGCGCGCGT
CAAGGAGGTGCTCACCTGGACGGGCAGCCAGGTGAAGGGCAAGTTCGGCC
GCTTCGGGCTCGAGTACTTCACGTGGTTCCTCGGCGGGGCGCTCGTGCTG
ACCGTCCCCATCTACCTCATGGCCGGGGTGAACGTGGTCGAGGACGCGTG
AGGAAAAAGGGGGCGAGTTACGAGTTACGGGGTAACCTGCGGCGGGGTGG
GTGGGCTACCCCAGAGACAGACAGCAGTGGTGGAAACTTGCGACGAGGAT
TGGGCAAGATCGGGGTGTGTGTGACGCACGTGTTAAGTTTTCGGCGTTCG
GCCTGTGGCTGGACTTCGGTGGGCCTGCTCCTCACGGGAGGCCGGCATTC
TACGCATGTATAGAGAGGAGCACAAAGCCAATGTCGACGGGGCGACCTTA
CCGCTTTGGAGACATGTCCAACTGCATGTACGCATACATCATACCTTCGA
GTGAAAGTGGAACGTAGGTCAGGGTGGATTGGCTCTGGTGCGTTCGTTGT
GATTTTTTATTGTGTAACGCCCTGCGGCGGCCGCCGTGGTTTTTTTTGCC
GTGTTTTTGTTTTGTGGTGGATCGGCTTGCAACAACAGCAGTCCGGTAGC
TGTTGTCTAGACGCTTTACCGAGACTAATAGCATCGTTTGTTGTTTACTT
GCTGTTTTGCCACAGCACTGAGTCAGTCGCCAGGCATGACTGCTCGGTTG
TGGAGTAATATGGCGAGTCATGAGTTTTAATCTATCTCTTGCTTAGGACT
CTTGGTGAGGGTCTATCTTGCCAGGCGTGGTTTGCCTCAAGACCAAGACT
TAACGGGGTCACGGTGCCTACGGCTTCCTGGTTTGGGAGGGTGGAGGGGA
ATGGATGTGAGACAACCGCGTCTGCGGCTTCCTATTAATAGATGCGGCTC
ATCGCAGAATCTCGTAATTTGCGTTCAGGAAGTCGTAGTTGCCGTCTCAT
CCCTTTCCCCCCTCCTCATAACCGTTGCTTTGGATTTTGGAAGGTTCGTA
TTCGGGGCCGTTTCGCACCTGAAACGTTCGATACTGTACTAGAGCCCGTG
TTTCCGTAGTGCACTGCACTCGCCAGCGTGGACGCTCCTCCGCAAATGGC
CCTCGTAGTCTTCTTGTGACGTTCGTATTTTACGTTGAGAGTGTGTCTCT
CTCGGGACACGAAGTAGATAATTTATTTTTGTTTTTTCCCTTTTGTCATG
CACGAATGTGTGTGCGATGAATGCCAGTTTCGCATGCGTGCGCGGTTAGG
TTCTCACCCTGTCTACCCTGTTACCTATACACATGTCTTGGTCTACATCG
ATGCCTCCTCTGGCTTCCTCTGCAGTAGTTGTTTGATGAAATATGTTTTT
GTCTCTAGTCGCTCTTGCTGTTGGCCGGGGTGTGATTTACCGGGGTGTTG
GGTTGTTCCAGGCTGTTGTTGTGTTGTTTGGAATCACGAGGACAAAAGAT
CCGTGTCATGTCATTGACTGTCGACGAGAGGTATAAAACGTTTGATGTTA
TAGCCACACTGCTCAAGTTGGCGTTTGAGAAGTGGCCGATAACTTCTGCG
GCATATTTCACAGTATTGACTTGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig109:226576..234499+

>mRNA_C-linearis_contig109.1111.1 ID=mRNA_C-linearis_contig109.1111.1|Name=mRNA_C-linearis_contig109.1111.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1902bp|location=Sequence derived from alignment at C-linearis_contig109:226576..234499+ (Chordaria linearis ClinC8C monoicous)
ATGTCCTCTCTTGTACATCGTCGGAAAGGGGGATCTCTAGATGGCGGCAA
GAAGACCATTGCCGTGCGATACGGGGACCGAGAGCACCTTGTTTCTTGAT
GTCCTCTCTTGTACATCGTCGGAAAGGGGGATCTCTAGATGGCGGCAAGA
AGACCATTGCCGTGCGATACGGGGACCGAGAGCACCTTGTTTCTTGGTTT
GCGGGAGCGAGCGACGAGTCCATAACTCGAACAATCGAGATCGCGCTCGG
ACTCCCGCGGGGCACTCCTGCGGTGATCCGAGATCCCGAGGATGGCAGCG
CCCTCGCCGTTAGCGACTCCCTGCCCGACGGTCTCACGCTGGACGCAACG
CCGGCTGCAGCGACAGCCGCCGTCGCGACCGCCGTGCTGGGGGGGAACGT
GGGCGAGGGCGGCCACGCGACGAAACGGGGCAGCAGCAGTATTAAACGAG
TTGGCGGCGGCAGTGGCGCGGCGGACGATTCGAGATCAGGGAGGCGGAGA
TCAGAGGACGGGTTTCACGGGAGCAGCGAGAGCGGCGGCAACAGCAGCAG
TAGCCATAGCAACGGAAAGAGCCTGCACGGTGGCGGCGACGGTAGCATCG
GCAACAACGGCTCCGGGGGCGGCGGCGGCAGTGGGGAGGGCAGGGGGGGC
GCGGCGCAGGAGTTCCGGGGGGAGCTGCTCAAGTTCGAACGAGTGAACGC
GCACCTCGCCAACGAGCGCACGTGGCTGGCGTGGGTCCGGACGGCCCTCT
CCGTGCTCGGGGTGGCCCTGTCCCTCATCAGCCTGACGGACGACATGGGG
TCGACGTCGATGGACTCGACCGCCCTGGCCCTCGGGGTGGCCTTCGTCCT
GTGCACGCTCTTCACGTACATGACCGGCTGGCTACGGTACGCGCGCGTCA
AGGAGGTGCTCACCTGGACGGGCAGCCAGGTGAAGGGCAAGTTCGGCCGC
TTCGGGCTCGAGTACTTCACGTGGTTCCTCGGCGGGGCGCTCGTGCTGAC
CGTCCCCATCTACCTCATGGCCGGGGTGAACGTGGTCGAGGACGCGTGAG
TTTGCGGGAGCGAGCGACGAGTCCATAACTCGAACAATCGAGATCGCGCT
CGGACTCCCGCGGGGCACTCCTGCGGTGATCCGAGATCCCGAGGATGGCA
GCGCCCTCGCCGTTAGCGACTCCCTGCCCGACGGTCTCACGCTGGACGCA
ACGCCGGCTGCAGCGACAGCCGCCGTCGCGACCGCCGTGCTGGGGGGGAA
CGTGGGCGAGGGCGGCCACGCGACGAAACGGGGCAGCAGCAGTATTAAAC
GAGTTGGCGGCGGCAGTGGCGCGGCGGACGATTCGAGATCAGGGAGGCGG
AGATCAGAGGACGGGTTTCACGGGAGCAGCGAGAGCGGCGGCAACAGCAG
CAGTAGCCATAGCAACGGAAAGAGCCTGCACGGTGGCGGCGACGGTAGCA
TCGGCAACAACGGCTCCGGGGGCGGCGGCGGCAGTGGGGAGGGCAGGGGG
GGCGCGGCGCAGGAGTTCCGGGGGGAGCTGCTCAAGTTCGAACGAGTGAA
CGCGCACCTCGCCAACGAGCGCACGTGGCTGGCGTGGGTCCGGACGGCCC
TCTCCGTGCTCGGGGTGGCCCTGTCCCTCATCAGCCTGACGGACGACATG
GGGTCGACGTCGATGGACTCGACCGCCCTGGCCCTCGGGGTGGCCTTCGT
CCTGTGCACGCTCTTCACGTACATGACCGGCTGGCTACGGTACGCGCGCG
TCAAGGAGGTGCTCACCTGGACGGGCAGCCAGGTGAAGGGCAAGTTCGGC
CGCTTCGGGCTCGAGTACTTCACGTGGTTCCTCGGCGGGGCGCTCGTGCT
GACCGTCCCCATCTACCTCATGGCCGGGGTGAACGTGGTCGAGGACGCGT
GA
back to top