mRNA_C-linearis_contig109.1109.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: A0A6H5L2R2_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R2_9PHAE) HSP 1 Score: 548 bits (1413), Expect = 2.180e-184 Identity = 273/337 (81.01%), Postives = 301/337 (89.32%), Query Frame = 3
Query: 135 DTEDPYPPPRLGMVVVDEVYAKVGAANDVVIVRRPDESLTVSDFHVMFSRKERVRGGPPDAPSSLSTAKKSVHTYINGRLQPQLYLRVKEDGFCTFPDGRLQPAGDALAALAENGALVDGVNSVRFQIGYLRDPRVLVAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRGVLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLRVWDGDTSKVGGSNDHSPISPSK 1145
D+++P PPP+L V DEVYAKVGAAND+V+VRRPD LTVSDFHV+FSRKERV+GGPP APSS+ TA K+VHTYING+LQPQLYLRV+EDGFCTF DGRLQPA +ALA LA++ LVDG N+VRF+I YLRDPRVLVAECFAFVW VNTPMIVVDIDGTITRSDVSGL+MTL+PGL+ + H GIC LLARMVDEAGAQVVYLTSRPI LA KTRTFL +TEQEGKKLPLGPL CCLEKV GVLWRELV+KNMHDYKI ALLDLA PFREAGR FGEAVFAAGIGNR+HDAVAY+AAGIP+DFIFLID ESNLRVWDGD SK+GGS +SPISP K
Sbjct: 24 DSQEPRPPPQLSNRVADEVYAKVGAANDLVLVRRPDGLLTVSDFHVVFSRKERVKGGPPKAPSSMVTANKAVHTYINGKLQPQLYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDPRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTNHNHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRVWDGDASKLGGSIANSPISPKK 360
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: D8LKT7_ECTSI (LNS2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT7_ECTSI) HSP 1 Score: 380 bits (976), Expect = 3.630e-121 Identity = 190/227 (83.70%), Postives = 206/227 (90.75%), Query Frame = 3
Query: 465 LAENGALVDGVNSVRFQIGYLRDPRVLVAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRGVLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLRVWDGDTSKVGGSNDHSPISPSK 1145
LA++ LVDG N+VRF+I YLRDPRVLVAECFAFVW VNTPMIVVDIDGTITRSDVSGL+MTL+PGL+ + TH GIC LLARMVDEAGAQVVYLTSRPI LA KTRTFL +TEQEGK+LPLGPL CCLEKV GVLWRELV+KNMHDYKI ALLDLA PFREAGR FGEAVFAAGIGNR+HDAVAY+AAGIP+DFIFLID ESNLRVWDGDTSK+GGS +SPISP K
Sbjct: 2 LAKDDTLVDGFNTVRFEIRYLRDPRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTNHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKRLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRVWDGDTSKMGGSRANSPISPKK 228
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: A0A836C9R7_9STRA (LNS2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R7_9STRA) HSP 1 Score: 212 bits (540), Expect = 3.080e-54 Identity = 151/457 (33.04%), Postives = 206/457 (45.08%), Query Frame = 3
Query: 186 EVYAKVGAANDVVIVRR-PDESLTVSDFHVMFSRKE-------------RVRGGPPDAPSSLSTAKKS-------------------------VHTYINGRLQPQLYLRVKEDGFCTFPDGRLQPAGDALAALAENGALVDGVNSVRFQ-------------------------------------IGYLRDPRVLVAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRG------------------------------------------------------------VLWRELVAKNMHDYKIKAL---------------------LDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLRVW 1085
E + KVGAANDV++VR D L SD+H+ F R+ + +++ T H ++NG+L P+LY+R++EDG C FPDG LQP A A N + GVN++RF+ + + DPRVLVAECFAF + ++V+DIDGTIT+SDV GL+MT +PG+ D GIC LL M +E GA ++YLTSRP+VLA +TR FLM Q+G LPLGPLL C KVR V++RE++AK+MH++K AL ++A F AGR + V+AAGIGNR DA AY+AAG+PEDFI +ID +N+++W
Sbjct: 520 ETFYKVGAANDVIMVRSVKDNKLCFSDWHMSFDRQPNAGRWRRLVTADTKXXXXXXXXXANMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAHVFLNGQLLPRLYMRIREDGACVFPDGTLQPP--ACATFDMNA--LPGVNTLRFEXXXXXXXXXXXXXXXXXXXXXGRAAAAAAAAATRSRTVRFRGDPRVLVAECFAFAFDARDRLLVMDIDGTITKSDVQGLIMTFSPGM-TDHLQPGICSLLHHMSNE-GAHILYLTSRPVVLAKRTRAFLMDLRQDGLLLPLGPLLTCKSKVRSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPSTLTDVVYREVIAKDMHEFKGSALQASLISALSAKNVTSGLQMLHAEVAEVFFRAGRPEDDPVYAAGIGNRETDAFAYQAAGVPEDFICIIDSSANIQIW 970
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: A0A835ZF08_9STRA (LNS2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF08_9STRA) HSP 1 Score: 154 bits (389), Expect = 3.130e-35 Identity = 108/287 (37.63%), Postives = 144/287 (50.17%), Query Frame = 3
Query: 477 GALVDGVNSVRFQIGYLRDPRVLVAECFAFVWGVNTP-MIVVDIDGTITRSDVSGLLMTLT------PGLLADRTHLGICKLLARMVDEA--------------------------GAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKV----------------------------------RG---VLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAG--------------IPEDFIFLIDPESNLRVW 1085
G L+ GVN++RF+ DPRVLVA+C AF ++VVDIDGTITRSD GLLMTL PG + D G+ LL + E GAQ++YLT+RP+ +AP+TR FL+ Q+G LPLGPL+ L K RG V++REL+A++MH +K + L D+A FR AGR VFAAG+GNRL DA+AY+ AG IP++FI +IDP++ +R W
Sbjct: 617 GQLLRGVNTLRFEARVRGDPRVLVADCLAFAMDAAAARVVVVDIDGTITRSDAHGLLMTLRLLMMLRPGTV-DHLQPGVYSLLHHVAAEEKKKRRXXXXXXXXXXXXXXXXXXXXXGAQLLYLTARPLAMAPRTRAFLVGATQDGLVLPLGPLVTNLCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARERGLTDVVYRELIARDMHRFKGQVLQDVAAVFRSAGRHARSRVFAAGVGNRLTDALAYQGAGGTPFRXXXXXXMAGIPDEFICIIDPKTAIRTW 902
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: F0WAE7_9STRA (Lipinlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAE7_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.350e-33 Identity = 104/299 (34.78%), Postives = 146/299 (48.83%), Query Frame = 3
Query: 192 YAKVGAANDVVIVRRPDESLTVSDFHVMFSR---KERVRGGPPDAPSSLSTAKKSVHTYINGRLQPQLYLRVKEDGFCTFPDGRLQPAGDALAALAENGALVDGVNSVRFQIGYLRDPRVLVAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRGVLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLR 1079
Y + G A DV+ V+ ++ + +HVMFS + R G D V +NG+ P + + + E G C F G L P DALA + D N VRF+ + EC +VW +I+VD+DGT+T SDV G + TL G D H G C+ ++ E +V+YLT+RP+ A +R L Q LP GPL+ + G L E+V KN H +K + L ++ AGR +F AG GNR D +AYK AGI D IFLID S+++
Sbjct: 117 YRQSGNAIDVIAVKSREDQFYTTSWHVMFSWSRFRSRTATGVGD----------EVRVLMNGKELP-VKMSLLERGRCVFQSGSLTPPIDALANVE---LYEDNANYVRFEHYQRSTCCIRYVECRLYVWHPEESVIIVDLDGTLTVSDVEGHIRTLRLGQY-DFLHRGTCQFFTKL-HELQMRVLYLTARPLDWASASRNHLENAIQLKHVLPPGPLITNSNGLTGALLTEVVNKNPHIFKRQVLQEIQLCLIHAGRVTEHPIFVAGFGNRSSDVLAYKDAGIELDMIFLIDSTSSIK 399
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: A0A024GU52_9STRA (LNS2 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GU52_9STRA) HSP 1 Score: 143 bits (361), Expect = 6.340e-33 Identity = 111/311 (35.69%), Postives = 150/311 (48.23%), Query Frame = 3
Query: 192 YAKVGAANDVVIVRRPDESLTVSDFHVMFSR---KERVRGGPPDAPSSLSTAKKSVHTYINGRLQPQLYLRVKEDGFCTFPDGRLQPAGDAL--AALAENGALVDGVNSVRFQIGYLRDPRVLVAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRGVLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLRVWDGDTSKVG 1109
Y + G A DV+ VR + L + +HVMFS + R G D V ING+ P + + + E G C F G L P DA L EN A N VRF+ + EC +VW +I+VD+DGT+T SDV G + TL G D H G C+ ++ E +V+YLT+RP+ A +R L Q LP GPL+ + G L E+V KN H +K + L ++ AGR +F AG GNR D +AYK AGI D IFLID S ++ +T+ VG
Sbjct: 119 YRQSGNAIDVIAVRSRENHLYTTSWHVMFSWSRFRSRTATGVGD----------QVRVLINGKELP-VKMSLLERGRCIFQSGSLTPPIDAFDHVELYENNA-----NYVRFEHYQKSTCCIRYVECRLYVWHPEESVIIVDMDGTLTVSDVEGHIRTLRLGQY-DYLHRGTCQFFTKL-HELQMRVLYLTARPLDWATASRNHLENAIQLKHVLPPGPLITNSNGLTGALLTEVVNKNPHIFKRQVLEEIQLCLIHAGRITEHPIFVAGFGNRSSDVLAYKDAGIELDMIFLIDSTSAIKC--SNTTFVG 409
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: A0A0W8DM28_PHYNI (LNS2 domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DM28_PHYNI) HSP 1 Score: 141 bits (356), Expect = 7.870e-33 Identity = 105/299 (35.12%), Postives = 141/299 (47.16%), Query Frame = 3
Query: 192 YAKVGAANDVVIVRRPDESLTVSDFHVMFSRKERVRGGPPDAPSSLSTAKKSVHTYINGRLQPQLYLRVKEDGFCTFPDGRL--QPAGDALAALAENGALVDGVNSVRFQIGYLRDPRVLVAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRGVLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLRV 1082
Y G A D+V V+ D + +HV FS R R + V +NGR P + + E G CTF G L P A L E D N VRF+ V + +WG N ++VVD+DGT+T SDV G + TL G D H G C ++ E G ++VYLT+RP+ A +RT L Q+ LP G L+ + G L+ E+V K H +KI+ L +L AGR VF AG GNR D VAY+ GI IF++DP SN++
Sbjct: 33 YKMAGNAVDIVAVKNMDGKYLTTSWHVSFSWS-RFRTSYATGVGDM------VMILVNGREMPTK-MELFERGRCTFITGGLIIPPEDLCFADLTE-----DRPNLVRFEHYQKYTNTVRYVDAKLHLWGPNESVVVVDLDGTLTISDVEGHIRTLRLGQY-DFLHAGACDFFTKL-HELGMRIVYLTARPLDWASASRTHLENAVQQSISLPPGVLITNSTGLTGALFTEVVNKTPHLFKIQVLNELQLTLIHAGRVIEHPVFVAGFGNRPTDIVAYEKVGIDPSLIFMLDPYSNIKA 316
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: A0A1V9ZNF1_9STRA (Lipin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZNF1_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.040e-32 Identity = 104/299 (34.78%), Postives = 146/299 (48.83%), Query Frame = 3
Query: 204 GAANDVVIVRRPDESLTVSDFHVMF---SRKERVRGGPPDAPSSLSTAKKSVHTYINGRLQPQLYLRVKEDGFCTFPDGRLQPAGDALAALAENGALVDGV-NSVRFQIGYLRDPRVL--VAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRGVLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLRV 1082
G A DV+++ D S +++HVMF + K VR G D + Y+N ++ + +++ E G CTF + +E +DG NSVRFQ ++RD R V EC +VW N ++VD+DGTIT SDV G + TL G D H+G C ++ GA+++YLT+RP+ A +R + QE LPLGP+ V KN H +K L + AGR VF AG GNR D +AY AG+P + FLIDPES L+
Sbjct: 21 GNAIDVILIASEDGSFYSTEWHVMFGWSNFKSNVRAGVGDV----------IDIYVND-VKLNVSMKLLEYGRCTFDHQDNEYLPPTTINWSECHLKLDGTPNSVRFQ--HVRDSRTYTRVVECDLYVWQPNDFAVIVDLDGTITISDVEGHIRTLRLGQY-DYMHMGSCDFFTKL-QSIGARILYLTARPLNWAGGSRIHIREARQENIGLPLGPV---------------VHKNPHIFKTGVLKAIQDAMVRAGRTSPHPVFVAGFGNRPSDTLAYTDAGVPLNATFLIDPESKLQA 289
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: A0A8K1C2A8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2A8_PYTOL) HSP 1 Score: 142 bits (359), Expect = 1.500e-32 Identity = 101/297 (34.01%), Postives = 142/297 (47.81%), Query Frame = 3
Query: 192 YAKVGAANDVVIVRRPDESLTVSDFHVMFSRKERVRGGPPDAPSSLSTAKKSVHTYINGRLQPQLYLRVKEDGFCTFPDGRLQPAGDALAALAENGALVDGVNSVRFQIGYLRDPRVLVAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRGVLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLRV 1082
+ G A D++ VR ++ + S +HVMFS R R + V +NG+ P +++ E G CTF G L P L + D N VRF+ + E +WG N ++V D+DGT+T SDV G + TL G D H G C ++ E +++YLT+RP+ A +RT L +Q+ LP G L+ + G L E+V KN H +K + L ++ AGR VF AG GNR D VAY+ GI IFLIDP SNL+
Sbjct: 134 FKNSGNAVDIIAVRSTEDLVFTSSWHVMFSWS-RFRSNITTGVGDM------VRVLVNGKELPTK-MQLLERGRCTFVTGGLTPPKTDLLKV---DLFDDRPNLVRFEHFQRSSDTIRYVESRLHLWGPNESVVVADLDGTLTISDVEGHIRTLRLGQY-DFLHHGACDFFNKL-HELDMRIIYLTARPLDWASASRTHLENAKQQTHALPPGVLITNSNGLTGALMTEVVNKNPHVFKAQVLNEIQLTLIHAGRVVEHPVFVAGFGNRPTDVVAYEQVGIDPALIFLIDPYSNLKA 417
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Match: A0A0P1A5S1_PLAHL (Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5S1_PLAHL) HSP 1 Score: 143 bits (360), Expect = 1.690e-32 Identity = 105/302 (34.77%), Postives = 144/302 (47.68%), Query Frame = 3
Query: 192 YAKVGAANDVVIVRRPDESLTVSDFHVMFSR---KERVRGGPPDAPSSLSTAKKSVHTYINGRLQPQLYLRVKEDGFCTFPDGRL--QPAGDALAALAENGALVDGVNSVRFQIGYLRDPRVLVAECFAFVWGVNTPMIVVDIDGTITRSDVSGLLMTLTPGLLADRTHLGICKLLARMVDEAGAQVVYLTSRPIVLAPKTRTFLMATEQEGKKLPLGPLLCCLEKVRGVLWRELVAKNMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPEDFIFLIDPESNLRV 1082
Y G A D+V V+ D + +HV FS + + G D V +NGR P + ++E G CTF G L P A L EN N VRF+ V + +WG N ++VVD+DGT+T SDV G + TL G D H G C ++ E G ++VYLT+RP+ A +RT L EQ+ LP G L+ + G L+ E+V K H +KI+ L +L AGR VF AG GNR D VAY+ G+ IF++DP SN++
Sbjct: 167 YKLSGNAVDIVAVKNTDGKYLTTSWHVSFSWSRFRTKFAAGVGDM----------VRILVNGRELPTK-MELQERGRCTFVTGGLVIPPEDLCFADLTENRP-----NLVRFEHYQKYTNTVRYVDTKLHLWGPNESVVVVDLDGTLTISDVEGHIRTLRLGQY-DFLHAGACDFFTKL-HELGMRIVYLTARPLDWASASRTHLENAEQQSISLPPGVLITNSTGLTGALFTEVVNKTPHLFKIQVLNELQLTLIHAGRVTEHPVFVAGFGNRPTDIVAYQEVGMDPSLIFMLDPYSNVKA 450 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1109.1 >prot_C-linearis_contig109.1109.1 ID=prot_C-linearis_contig109.1109.1|Name=mRNA_C-linearis_contig109.1109.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=689bp MSDAGISPAVGIAGHGGMPGMPSMPPAPEYQRADTEDPYPPPRLGMVVVDback to top mRNA from alignment at C-linearis_contig109:215247..220975+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1109.1 ID=mRNA_C-linearis_contig109.1109.1|Name=mRNA_C-linearis_contig109.1109.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5729bp|location=Sequence derived from alignment at C-linearis_contig109:215247..220975+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:215247..220975+ >mRNA_C-linearis_contig109.1109.1 ID=mRNA_C-linearis_contig109.1109.1|Name=mRNA_C-linearis_contig109.1109.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4134bp|location=Sequence derived from alignment at C-linearis_contig109:215247..220975+ (Chordaria linearis ClinC8C monoicous)back to top |