mRNA_C-linearis_contig109.1103.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1103.1
Unique NamemRNA_C-linearis_contig109.1103.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A6H5L442_9PHAE (Peptidase_S26 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L442_9PHAE)

HSP 1 Score: 387 bits (995), Expect = 2.230e-128
Identity = 247/378 (65.34%), Postives = 273/378 (72.22%), Query Frame = 1
Query:    7 ANQGIYPGVEYRILEMSIFPTIPESPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------RADLDAEPTSLLASARDAPEGAFEDGGLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRDDIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGW---LPQIGSRGGGGGERNAGAGSEITREGPAGL-GTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDGA--FVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFGLLR 1101
            +NQGIYPGVEYRILE+S+FPT    PT                    XXXXXXXXXXXX       + DLDAEPT++LASARDAP  +F+DG LVFTMRPIYPLV RLER DWPV VPAREFPVMLTPFSYNAATAWAA TTSLSLL+VGFV SQALT SVINSHSMEPTLQVGDVVLVEKVSRS +V+ +DIV+     VL+++VS AGG L+PSDLFVKRV  L GDTVTVSADGSVDVR     AGG    LP+  +R   GG    G    I  +G AG  G+  A     GG +A         + K ALPDSVLQRITR+DEKVL     FVLGDNPAASMDSRVWGQLD+GEIVGHALLRV PPRSFGLL+
Sbjct:  166 SNQGIYPGVEYRILEISVFPTARTPPTGDSTKASSDSAAAVAPYLSSXXXXXXXXXXXXXXXXXXXQPDLDAEPTAVLASARDAPPESFDDGSLVFTMRPIYPLVARLERGDWPVRVPAREFPVMLTPFSYNAATAWAAFTTSLSLLSVGFVLSQALTLSVINSHSMEPTLQVGDVVLVEKVSRSFLVKPNDIVYFRPPPVLQDIVSRAGGTLSPSDLFVKRVAALSGDTVTVSADGSVDVR---AAAGGGITRLPKGTNRADNGGSAAGGESDVILGDGVAGQEGSAAAVAAAKGGTLA---------EEKVALPDSVLQRITRLDEKVLPSGSVFVLGDNPAASMDSRVWGQLDKGEIVGHALLRVFPPRSFGLLQ 531          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A835YRZ1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.740e-40
Identity = 119/288 (41.32%), Postives = 135/288 (46.88%), Query Frame = 1
Query:  217 LASARDAPEGAFEDGGLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRDDIVFXXXXXVLREVVSSAGGA-LNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDGAFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLP 1077
            L S  DAP  AFE G L+  +RPIYPL+ RLER  WPV V AR+ P+ LT F+YN ATAWAAL                LT S I S SMEP L+ GDVVLVEKVSR A++RR ++VF      LR  V+ AGGA L   DLFVKRV  L GD V V+ DG   VR       G LP+            A     + RE                                                     AFVLGDNP  S+DSRVWG L    IVG  LLRV P
Sbjct:   20 LDSVADAPPNAFEAGDLLLQLRPIYPLIPRLERA-WPVTVAARDVPIALTAFAYNVATAWAALXXXXXXXXXXXXXXXTLTLSFIPSRSMEPVLRPGDVVLVEKVSRGALLRRGEVVFFAPPPALRAAVADAGGAPLRGGDLFVKRVAALTGDDVAVARDGETRVRGALVRGAGDLPR------------AARSRLLLRE-----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXAGSAFVLGDNPLHSVDSRVWGDLPYSNIVGRPLLRVFP 271          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A0G4EFP7_VITBC (Mitochondrial inner membrane protease subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFP7_VITBC)

HSP 1 Score: 142 bits (358), Expect = 4.580e-35
Identity = 121/289 (41.87%), Postives = 147/289 (50.87%), Query Frame = 1
Query:  268 VFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVR---RDDIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTV-----SADGSVDVRP-PSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVL-DGA-FVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFGLLR 1101
            V T+RP Y LV++LER  WPV +   E P+ LTP  YN AT  + L ++  LLAV  VASQ  +   I S+SMEPTL  GDV+LVEKVSR  +VR     DIV       LR  V  AGG L P DLFVKRV    GD VTV     + +G   V P P  P     P IGS         A A   + R                        L  GRG       ++  Q +   DE VL  GA +VLGDNP  S+DSR+WG+L E EIVGH ++R+ P   FG +R
Sbjct:  160 VITVRPRYRLVDKLERQ-WPVTIAMSEVPIFLTPRMYNTATLISTLLSAAQLLAVALVASQFCSLYYIPSYSMEPTLHKGDVLLVEKVSR--LVRPPKNGDIVLFNPPEQLRTFVRQAGGQLAPGDLFVKRVAATQGDRVTVDNGLPTINGHTYVYPEPEEP-----PTIGSD-----APPARADGSMQR------------------------LAIGRGFAWPYAGEAPSQWVA--DECVLGSGAVYVLGDNPVRSVDSRLWGELRESEIVGHPVIRLFPWGRFGPVR 409          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A448ZBV4_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBV4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.160e-31
Identity = 101/294 (34.35%), Postives = 144/294 (48.98%), Query Frame = 1
Query:  229 RDAPEGAFEDGGLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRD---DIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQR-ITRVDEKVLDG--AFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFG 1092
            RD  E      G  + ++P+YPLV +LER  WPV V  R+ P + TP  YN  +A+ +L T+ S L V F+ SQA++   I S SM+PTL+VGDV+LV+KVS     R++   D+V       L+E+V+  GG L+  DLFVKR+   PGD VTV  DG VDV                            G ++                             GR     A P  ++++ I   ++K++D    FV+GD  + S+DSRVWG L+   IVG  ++R+ P   FG
Sbjct:  380 RDGRERFTSCPGADYELKPVYPLVAQLERP-WPVRVNERDIPKLFTPSMYNLLSAFGSLFTAASGLFVAFLLSQAISLFFIPSKSMDPTLKVGDVLLVDKVSSRTPFRKNEVGDMVLFSPPSRLQEIVAKNGGNLSSRDLFVKRIAASPGDRVTVYKDGKVDVN---------------------------GQDVV---------------------------AGRRDLCEAEPLRLIEKYIEPREDKIIDQKEVFVMGDCSSVSVDSRVWGSLEAENIVGRPIVRIWPLDRFG 618          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A7S1CZJ0_CYCTE (Mitochondrial inner membrane protease subunit n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZJ0_CYCTE)

HSP 1 Score: 112 bits (281), Expect = 2.290e-25
Identity = 92/277 (33.21%), Postives = 123/277 (44.40%), Query Frame = 1
Query:  271 FTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRD---DIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDGAFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFG 1092
            + ++PIYPLV++LER  WPV V   E P + T   YN  +A  +L T+   L V +  SQ ++   I S SM+PTL VGDVV+VEKVS       +   D++       L+E+V S+GG +   DLFVKRV   P   VTV +DG V +                      E       ++  E P GL                             +   +    T V     D  FV+GD  + S+DSRVWG L   EI+G  L RV P   FG
Sbjct:   20 YDLKPIYPLVDQLERP-WPVTVNEAEIPRLYTVGMYNTVSALGSLFTATFGLGVAYALSQMISLFFIPSRSMDPTLAVGDVVVVEKVSPRIFKSNNHVGDVILFHPPSRLQEIVKSSGGRIGNRDLFVKRVAAEPTQKVTVGSDGKVLID---------------------EMELQEKRDMCSEEPLGL-----------------------------IERYIEPGTTEVQS---DEVFVMGDCSSVSIDSRVWGPLPNKEIIGKPLFRVWPIERFG 242          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A1Z5JWA6_FISSO (Mitochondrial inner membrane protease subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWA6_FISSO)

HSP 1 Score: 107 bits (267), Expect = 5.700e-22
Identity = 95/294 (32.31%), Postives = 138/294 (46.94%), Query Frame = 1
Query:  262 GLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRD---------DIVFXXXXXVLREVVSSAGGA-LNPSDLFVKRVTGLPGDTVTVS-ADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDG---AFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFGLLR 1101
            G+ + ++PIYPLV +LER  WPV V  R+ P + TP  YN  +A  +L T+++ L   F+ SQA++  VI S SMEPTLQVGDV+LV+KV+     + +         +I+       L+++V  +GG  L   +LFVKRV   PG T+ ++ A G+V++        G  P          ER    G E TR                                       ++++  R  ++   G     VLGD  + S+DSRVWG L    IVG  LLRV P    G ++
Sbjct:  261 GVDYELKPIYPLVQQLERL-WPVRVNERDIPKLYTPAMYNGISAVGSLLTAVTGLLAAFLVSQAISIFVIPSRSMEPTLQVGDVLLVDKVTPRLTNKLNLNKYNDWVGNIILFHPTESLQDIVLKSGGRKLTDRELFVKRVAAGPGSTLKITDASGAVEID-------GRKPL---------ERRDFCGEEPTR---------------------------------------LIEKFLRQGDEFQVGPKQVAVLGDCSSVSIDSRVWGPLPTDNIVGRPLLRVWPLSRVGQIQ 498          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A1Z5KRR1_FISSO (Mitochondrial inner membrane protease subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRR1_FISSO)

HSP 1 Score: 102 bits (253), Expect = 1.390e-20
Identity = 94/291 (32.30%), Postives = 134/291 (46.05%), Query Frame = 1
Query:  262 GLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRD---------DIVFXXXXXVLREVVSSAGGA-LNPSDLFVKRVTGLPGDTVTVS-ADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDG---AFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFG 1092
            G+ + ++PIYPLV +LER  WPV V  ++ P + TP  YN  +A  +L T++  L   F+ SQA++  VI S SMEPTLQVGDV+LV+K++     + +          IV       L+++V  +GG  L   +LFVKRV   PG T+ ++ A G+V++        G  P          ER    G E TR                                       ++++  R  ++   G     VLGD  + S+DSRVWG L    IVG  LLRV P    G
Sbjct:  129 GVDYELKPIYPLVQQLERL-WPVRVNEKDIPRLYTPAMYNGLSAIGSLFTAVMGLLAAFLVSQAISIFVIPSRSMEPTLQVGDVLLVDKLTPRLTNKLNLNKYSEWVGYIVLFRPTESLQDIVLQSGGRKLTDRELFVKRVAAGPGSTLKITDASGAVEID-------GRKPL---------ERRDFCGEEPTR---------------------------------------LIEKFLRQGDEFQVGPKQVAVLGDCSSVSIDSRVWGPLPTDNIVGRPLLRVWPLSRVG 363          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A7S1BHK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BHK1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.810e-16
Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  250 FEDGGLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRR---DDIVFXXXXXVLREVVSSAGGAL 624
            F+  G+ + ++P+YPLV  +ER  WPV +  +E   ++TP  YN  TA+ A++T++S L   F+ S A++   I S SM+PTL+VGDV+LVEK+S    + R    D+V       LR++V+  GG L
Sbjct:  104 FDQPGVDYEVKPVYPLVASMERQ-WPVRIAEKELTKIITPLQYNILTAFGAVSTAVSTLVTFFLISLAVSLFFIPSKSMDPTLRVGDVLLVEKISPRLPLHRYAVGDVVMFRPPPALRDIVARNGGRL 230          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A1E7FW23_9STRA (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW23_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.120e-15
Identity = 71/218 (32.57%), Postives = 98/218 (44.95%), Query Frame = 1
Query:  469 INSHSMEPTLQVGDVVLVEK----VSRSAIVRR---DDIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVL---DGAFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFG 1092
            I S SM+PTLQ+GDV+LV+K    +SR    R    +DI+       L+E+V+ +GG L+  DLFVKR+   PGD VTV ADG V+V                                                EN  VV       GR     A P  ++++  + ++  +   D  FV+GD  + S+DSRVWG LD   I G  +LR+ P   FG
Sbjct:    2 IPSKSMDPTLQIGDVLLVDKLSPRISRQISPRNSKVNDIILFSPPSELQEIVTKSGGNLSSRDLFVKRIAASPGDKVTVYADGDVEVND----------------------------------------------EN--VV------VGRRDLCEAEPLRLIEKYIQPNKDQIIDSDKVFVMGDCSSVSVDSRVWGPLDTENIRGRPILRLWPMSRFG 165          
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A7S1VCS1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VCS1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.090e-15
Identity = 74/226 (32.74%), Postives = 102/226 (45.13%), Query Frame = 1
Query:  409 TSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSR---SAIVRRDDIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDGAFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLP 1077
            T+++ L   F  SQA++F VI S SM+PT QVGDVVLVEKVS    +A    DD+V       L ++V S GG ++  DLFVKR+   PGD V V  + S D+   ++ A                      S  TR+                       +   R   +  +   +  + T V     D  FVLGD    S+DSRVWG L   +IVG  ++R+ P
Sbjct:    5 TAVTGLLTAFAISQAVSFFVIPSQSMDPTFQVGDVVLVEKVSPRLPNAQYNADDVVLFHPPSPLLDIVQSTGGRISSRDLFVKRIAATPGDQV-VLPENSGDILVNNKDA----------------------STNTRDRH---------------------MCKVRDSAQDLMKRYLKPQTTNVPP---DEVFVLGDCADVSIDSRVWGTLPTRDIVGRPVMRIWP 183          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L442_9PHAE2.230e-12865.34Peptidase_S26 domain-containing protein n=2 Tax=Ec... [more]
A0A835YRZ1_9STRA1.740e-4041.32Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A0G4EFP7_VITBC4.580e-3541.87Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A448ZBV4_9STRA6.160e-3134.35Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S1CZJ0_CYCTE2.290e-2533.21Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A1Z5JWA6_FISSO5.700e-2232.31Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A1Z5KRR1_FISSO1.390e-2032.30Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S1BHK1_9STRA4.810e-1639.84Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A1E7FW23_9STRA1.120e-1532.57Mitochondrial inner membrane protease subunit (Fra... [more]
A0A7S1VCS1_9STRA6.090e-1532.74Mitochondrial inner membrane protease subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:191914..193346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.1
Seed ortholog evalue1.8e-76
Seed eggNOG ortholog2880.D8LKT2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase S24-like
EggNOG OGs2CZ78@1,2S8VM@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1104
Cds size1104
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927418.1652021-CDS-C-linearis_contig109:191913..1925161622927418.1652021-CDS-C-linearis_contig109:191913..192516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 191914..192516 -
1690879690.0455377-CDS-C-linearis_contig109:191913..1925161690879690.0455377-CDS-C-linearis_contig109:191913..192516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 191914..192516 -
1622927418.1831834-CDS-C-linearis_contig109:192845..1933461622927418.1831834-CDS-C-linearis_contig109:192845..193346Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 192846..193346 -
1690879690.0588284-CDS-C-linearis_contig109:192845..1933461690879690.0588284-CDS-C-linearis_contig109:192845..193346Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 192846..193346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1103.1prot_C-linearis_contig109.1103.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 191914..193346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1103.1

>prot_C-linearis_contig109.1103.1 ID=prot_C-linearis_contig109.1103.1|Name=mRNA_C-linearis_contig109.1103.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=368bp
RLANQGIYPGVEYRILEMSIFPTIPESPTTTTTTTTVATSSGPPPPSFSN
QNQQQQQQQRRRADLDAEPTSLLASARDAPEGAFEDGGLVFTMRPIYPLV
NRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQ
ALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRDDIVFFTPPPVLREV
VSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQI
GSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRG
QGKAALPDSVLQRITRVDEKVLDGAFVLGDNPAASMDSRVWGQLDEGEIV
GHALLRVLPPRSFGLLR*
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mRNA from alignment at C-linearis_contig109:191914..193346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1103.1 ID=mRNA_C-linearis_contig109.1103.1|Name=mRNA_C-linearis_contig109.1103.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1433bp|location=Sequence derived from alignment at C-linearis_contig109:191914..193346- (Chordaria linearis ClinC8C monoicous)
CGCCTTGCCAACCAAGGCATTTACCCCGGCGTCGAGTACCGCATCCTCGA GATGTCAATTTTTCCAACCATACCAGAATCGCCCACCACCACCACCACCA CCACCACGGTCGCCACCAGTAGCGGACCTCCGCCCCCCTCCTTTTCCAAT CAGAACCAGCAGCAGCAGCAGCAGCAGCGGCGGCGAGCAGACCTAGACGC CGAGCCTACGTCCCTCCTCGCCTCTGCCAGAGACGCCCCGGAAGGCGCGT TCGAGGACGGCGGCCTGGTCTTCACGATGCGCCCGATCTACCCGCTCGTG AACCGCCTCGAGCGCGACGACTGGCCGGTCCTCGTCCCCGCCCGAGAGTT CCCAGTCATGCTCACGCCCTTCTCGTACAACGCGGCTACCGCGTGGGCGG CCCTCACCACGTCCCTGTCGCTCCTGGCGGTGGGGTTCGTGGCGAGCCAG GCGTTGACGTTTTCGGTCATCAATAGTCACAGCATGGAGCCGACCCTGCA GGTGGAGTGGAGGCTGGGCTTTGGGGTGCGGTGGTGCTGTGGGGGTTGAG GGCCGGGAGCGAGGGCGACACTCCAGCGTTTTTTTTTTTTGCTTGGTTGG AAGTTGGACCTGCGCTGTGTTGGAGCAGGCGTTTGGATAGAGTGCTGCTT GGACGACGTTTAACTTACGAAGTACTGGTAGGTTCCGATCGAAGGAAAAC AACAGGCAGGTAAAGCAGACCTTGCTTCATCTTACTCCAAACAACTACCA CCACCGACCGCCGAATAGAAGGGATTGCTGTTGTAACTAACCGCCCTGCC GAACACGCACACGCACACGCACACACACAGGTTGGCGACGTGGTCCTCGT GGAGAAGGTGTCGAGGTCGGCCATCGTCCGCAGGGACGACATCGTGTTCT TCACGCCCCCGCCCGTGCTGAGGGAGGTGGTCTCCTCCGCGGGGGGCGCC CTCAACCCCAGCGACCTCTTCGTGAAGCGCGTGACCGGGCTCCCGGGCGA CACGGTGACCGTTAGTGCCGACGGGAGCGTGGATGTCCGGCCACCGTCGC GGCCGGCCGGCGGATGGCTGCCACAAATCGGAAGCAGAGGCGGAGGAGGA GGAGAAAGGAATGCCGGAGCCGGCTCTGAAATAACCAGAGAGGGGCCGGC GGGGTTAGGCACAGAGGGGGCGGCGCAAGGGGAAAATGGCGGTGTGGTAG CATCGGGCGCTTTGGGAACGGGCAGGGGGCAGGGCAAGGCGGCCCTTCCG GATAGCGTTCTACAGCGAATAACGCGCGTCGACGAGAAGGTCCTGGACGG GGCATTTGTTCTCGGGGACAACCCGGCAGCCTCGATGGACTCGAGGGTGT GGGGGCAGCTCGACGAAGGGGAGATTGTGGGGCACGCGTTGCTGAGGGTT TTGCCGCCCCGTTCGTTCGGGCTTCTGCGATAG
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Coding sequence (CDS) from alignment at C-linearis_contig109:191914..193346-

>mRNA_C-linearis_contig109.1103.1 ID=mRNA_C-linearis_contig109.1103.1|Name=mRNA_C-linearis_contig109.1103.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2208bp|location=Sequence derived from alignment at C-linearis_contig109:191914..193346- (Chordaria linearis ClinC8C monoicous)
CGCCTTGCCAACCAAGGCATTTACCCCGGCGTCGAGTACCGCATCCTCGA
GATGTCAATTTTTCCAACCATACCAGAATCGCCCACCACCACCACCACCA
CCACCACGGTCGCCACCAGTAGCGGACCTCCGCCCCCCTCCTTTTCCAAT
CAGAACCAGCAGCAGCAGCAGCAGCAGCGGCGGCGAGCAGACCTAGACGC
CGAGCCTACGTCCCTCCTCGCCTCTGCCAGAGACGCCCCGGAAGGCGCGT
TCGAGGACGGCGGCCTGGTCTTCACGATGCGCCCGATCTACCCGCTCGTG
AACCGCCTCGAGCGCGACGACTGGCCGGTCCTCGTCCCCGCCCGAGAGTT
CCCAGTCATGCTCACGCCCTTCTCGTACAACGCGGCTACCGCGTGGGCGG
CCCTCACCACGTCCCTGTCGCTCCTGGCGGTGGGGTTCGTGGCGAGCCAG
GCGTTGACGTTTTCGGTCATCAATAGTCACAGCATGGAGCCGACCCTGCA
GCGCCTTGCCAACCAAGGCATTTACCCCGGCGTCGAGTACCGCATCCTCG
AGATGTCAATTTTTCCAACCATACCAGAATCGCCCACCACCACCACCACC
ACCACCACGGTCGCCACCAGTAGCGGACCTCCGCCCCCCTCCTTTTCCAA
TCAGAACCAGCAGCAGCAGCAGCAGCAGCGGCGGCGAGCAGACCTAGACG
CCGAGCCTACGTCCCTCCTCGCCTCTGCCAGAGACGCCCCGGAAGGCGCG
TTCGAGGACGGCGGCCTGGTCTTCACGATGCGCCCGATCTACCCGCTCGT
GAACCGCCTCGAGCGCGACGACTGGCCGGTCCTCGTCCCCGCCCGAGAGT
TCCCAGTCATGCTCACGCCCTTCTCGTACAACGCGGCTACCGCGTGGGCG
GCCCTCACCACGTCCCTGTCGCTCCTGGCGGTGGGGTTCGTGGCGAGCCA
GGCGTTGACGTTTTCGGTCATCAATAGTCACAGCATGGAGCCGACCCTGC
AGGTTGGCGACGTGGTCCTCGTGGAGAAGGTGTCGAGGTCGGCCATCGTC
CGCAGGGACGACATCGTGTTCTTCACGCCCCCGCCCGTGCTGAGGGAGGT
GGTCTCCTCCGCGGGGGGCGCCCTCAACCCCAGCGACCTCTTCGTGAAGC
GCGTGACCGGGCTCCCGGGCGACACGGTGACCGTTAGTGCCGACGGGAGC
GTGGATGTCCGGCCACCGTCGCGGCCGGCCGGCGGATGGCTGCCACAAAT
CGGAAGCAGAGGCGGAGGAGGAGGAGAAAGGAATGCCGGAGCCGGCTCTG
AAATAACCAGAGAGGGGCCGGCGGGGTTAGGCACAGAGGGGGCGGCGCAA
GGGGAAAATGGCGGTGTGGTAGCATCGGGCGCTTTGGGAACGGGCAGGGG
GCAGGGCAAGGCGGCCCTTCCGGATAGCGTTCTACAGCGAATAACGCGCG
TCGACGAGAAGGTCCTGGACGGGGCATTTGTTCTCGGGGACAACCCGGCA
GCCTCGATGGACTCGAGGGTGTGGGGGCAGCTCGACGAAGGGGAGATTGT
GGGGCACGCGTTGCTGAGGGTTTTGCCGCCCCGTTCGTTCGGGCTTCTGC
GATAGGTTGGCGACGTGGTCCTCGTGGAGAAGGTGTCGAGGTCGGCCATC
GTCCGCAGGGACGACATCGTGTTCTTCACGCCCCCGCCCGTGCTGAGGGA
GGTGGTCTCCTCCGCGGGGGGCGCCCTCAACCCCAGCGACCTCTTCGTGA
AGCGCGTGACCGGGCTCCCGGGCGACACGGTGACCGTTAGTGCCGACGGG
AGCGTGGATGTCCGGCCACCGTCGCGGCCGGCCGGCGGATGGCTGCCACA
AATCGGAAGCAGAGGCGGAGGAGGAGGAGAAAGGAATGCCGGAGCCGGCT
CTGAAATAACCAGAGAGGGGCCGGCGGGGTTAGGCACAGAGGGGGCGGCG
CAAGGGGAAAATGGCGGTGTGGTAGCATCGGGCGCTTTGGGAACGGGCAG
GGGGCAGGGCAAGGCGGCCCTTCCGGATAGCGTTCTACAGCGAATAACGC
GCGTCGACGAGAAGGTCCTGGACGGGGCATTTGTTCTCGGGGACAACCCG
GCAGCCTCGATGGACTCGAGGGTGTGGGGGCAGCTCGACGAAGGGGAGAT
TGTGGGGCACGCGTTGCTGAGGGTTTTGCCGCCCCGTTCGTTCGGGCTTC
TGCGATAG
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