mRNA_C-linearis_contig109.1098.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1098.1
Unique NamemRNA_C-linearis_contig109.1098.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 9.620e-30
Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 RLSLEAKGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQPRLDKAAACVEKNPAAISVV--GGDNAGESAVVAGA 261
            RLSLEA+GSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFL DL+NVLH+ETQPRLD AA  V K  AA + V  GGD   +  V  GA
Sbjct:  364 RLSLEARGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLGDLVNVLHEETQPRLDIAAGYVGKPLAAAAAVSGGGDKGKKVEVAVGA 452
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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.010e-27
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 RLSLEAKGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQPRLDKAAACVEKNPAA 207
            RLSLEA+GSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFL DL+N LH+ETQPRLD AA  V K  AA
Sbjct:  469 RLSLEARGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLGDLVNALHEETQPRLDIAAGYVGKPLAA 537
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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.130e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 RLSLEAKGS-HGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQP 162
            +L+L A G  HG++    LK AMD HSDRFAGNLQQDAHEF  DLIN L +E +P
Sbjct:  443 QLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEP 497
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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: K0T238_THAOC (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T238_THAOC)

HSP 1 Score: 50.4 bits (119), Expect = 6.590e-5
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   40 DASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQ 159
            D   LKR MD  +D+FAG LQ+DAHEF +DLI+ LHDE +
Sbjct:  372 DPVALKRQMDVITDKFAGYLQRDAHEFFADLIDFLHDELE 411
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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: A0A7S3Q7Y5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7Y5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.130e-5
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   52 LKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQPRLD 171
            LK+AMD  +D+FAG  Q+DAHEFLSDLI+++H+E    +D
Sbjct:  567 LKKAMDGLTDKFAGYEQRDAHEFLSDLIDLMHEELSRTVD 606
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G2P5_ECTSI9.620e-3074.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUE2_9PHAE1.010e-2784.06USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YKZ9_9STRA4.130e-1161.82USP domain-containing protein n=1 Tax=Tribonema mi... [more]
K0T238_THAOC6.590e-560.00Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A7S3Q7Y5_9STRA9.130e-557.50Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Chae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:153333..154065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.6e-25
Seed eggNOG ortholog2880.D7G2P5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927417.6374083-CDS-C-linearis_contig109:153334..1535751622927417.6374083-CDS-C-linearis_contig109:153334..153575Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 153335..153575 -
1690879689.6934912-CDS-C-linearis_contig109:153334..1535751690879689.6934912-CDS-C-linearis_contig109:153334..153575Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 153335..153575 -
1622927417.6490817-CDS-C-linearis_contig109:153988..1540651622927417.6490817-CDS-C-linearis_contig109:153988..154065Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 153989..154065 -
1690879689.712458-CDS-C-linearis_contig109:153988..1540651690879689.712458-CDS-C-linearis_contig109:153988..154065Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 153989..154065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1098.1prot_C-linearis_contig109.1098.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 153335..154065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1098.1

>prot_C-linearis_contig109.1098.1 ID=prot_C-linearis_contig109.1098.1|Name=mRNA_C-linearis_contig109.1098.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp
RLSLEAKGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHD
ETQPRLDKAAACVEKNPAAISVVGGDNAGESAVVAGAAAARQGHGRKRVA
SGEAKK
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mRNA from alignment at C-linearis_contig109:153333..154065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1098.1 ID=mRNA_C-linearis_contig109.1098.1|Name=mRNA_C-linearis_contig109.1098.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at C-linearis_contig109:153333..154065- (Chordaria linearis ClinC8C monoicous)
CGGCTGTCCCTGGAGGCCAAGGGGTCTCACGGCCTCATGGACGCGTCCCC
GCTCAAGCGGGCGATGGACAGGCACTCGTGAGTCGGGCGGACTGCATGAT
TGTCTGTTGGTACTGCTGTATGTTTTTTTTTTTTTCACAAGGCTTGGTGT
CTGTATGATAGGCCCGAAAAAAAAAACCGTGGAGGACCTTCCCGAACAAT
ATCTGTGTGTCGGCATGCCCACGTTTTTTGTTTGTTTTTCTGTTTAAGGT
TGCATGTTTGTTTGTTTTCATTTGTGTTCCAATTTGGGTTTTGATGGTAT
CTACAACTGCTTCGGCGAGAGCTTATTATGCGTGCGTCCCCGTGCTTTAT
GTTAGTTTAAGTCCAACGTCAGGTGACGGACACCAAACCCTGTTGTGGCT
CACCGCTCACCGCTCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCACCCGCCCCCGATCCCCGGCCGCCGCGCGCGCAGGGACCGGTTT
GCCGGGAACCTCCAGCAAGACGCCCACGAGTTCTTGAGCGACCTTATCAA
CGTCCTGCATGACGAAACACAGCCCCGACTAGACAAGGCCGCTGCTTGCG
TCGAGAAGAACCCCGCCGCAATATCCGTTGTCGGGGGAGACAATGCTGGA
GAGTCGGCAGTGGTGGCGGGGGCGGCGGCGGCGAGACAAGGACATGGGAG
GAAGCGCGTGGCGTCCGGCGAGGCTAAGAAGAG
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Coding sequence (CDS) from alignment at C-linearis_contig109:153333..154065-

>mRNA_C-linearis_contig109.1098.1 ID=mRNA_C-linearis_contig109.1098.1|Name=mRNA_C-linearis_contig109.1098.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at C-linearis_contig109:153333..154065- (Chordaria linearis ClinC8C monoicous)
CGGCTGTCCCTGGAGGCCAAGGGGTCTCACGGCCTCATGGACGCGTCCCC
GCTCAAGCGGGCGATGGACAGGCACTCCGGCTGTCCCTGGAGGCCAAGGG
GTCTCACGGCCTCATGGACGCGTCCCCGCTCAAGCGGGCGATGGACAGGC
ACTCGGACCGGTTTGCCGGGAACCTCCAGCAAGACGCCCACGAGTTCTTG
AGCGACCTTATCAACGTCCTGCATGACGAAACACAGCCCCGACTAGACAA
GGCCGCTGCTTGCGTCGAGAAGAACCCCGCCGCAATATCCGTTGTCGGGG
GAGACAATGCTGGAGAGTCGGCAGTGGTGGCGGGGGCGGCGGCGGCGAGA
CAAGGACATGGGAGGAAGCGCGTGGCGTCCGGCGAGGCTAAGAAGGGACC
GGTTTGCCGGGAACCTCCAGCAAGACGCCCACGAGTTCTTGAGCGACCTT
ATCAACGTCCTGCATGACGAAACACAGCCCCGACTAGACAAGGCCGCTGC
TTGCGTCGAGAAGAACCCCGCCGCAATATCCGTTGTCGGGGGAGACAATG
CTGGAGAGTCGGCAGTGGTGGCGGGGGCGGCGGCGGCGAGACAAGGACAT
GGGAGGAAGCGCGTGGCGTCCGGCGAGGCTAAGAAG
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