mRNA_C-linearis_contig109.1097.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1097.1
Unique NamemRNA_C-linearis_contig109.1097.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:149512..150570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size358
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.084768-CDS-C-linearis_contig109:149513..1497471622927416.084768-CDS-C-linearis_contig109:149513..149747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 149514..149747 -
1690879688.9659984-CDS-C-linearis_contig109:149513..1497471690879688.9659984-CDS-C-linearis_contig109:149513..149747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 149514..149747 -
1622927416.096153-CDS-C-linearis_contig109:150450..1505701622927416.096153-CDS-C-linearis_contig109:150450..150570Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 150451..150570 -
1690879688.9762254-CDS-C-linearis_contig109:150450..1505701690879688.9762254-CDS-C-linearis_contig109:150450..150570Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 150451..150570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1097.1prot_C-linearis_contig109.1097.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 149514..150570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1097.1

>prot_C-linearis_contig109.1097.1 ID=prot_C-linearis_contig109.1097.1|Name=mRNA_C-linearis_contig109.1097.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
GGVAKKLGSVLRDSTNSSSGGTGSGGVRETVTERKKRQQKEKENAATSSV
GRDRWSGQDKHSRDHRKRHHAVAAGGVRLDANRNVDYLATLSSGNGSSVA
RGSSSSSPAAGGGAGGSR
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mRNA from alignment at C-linearis_contig109:149512..150570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1097.1 ID=mRNA_C-linearis_contig109.1097.1|Name=mRNA_C-linearis_contig109.1097.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1059bp|location=Sequence derived from alignment at C-linearis_contig109:149512..150570- (Chordaria linearis ClinC8C monoicous)
GGCGGGGTGGCGAAGAAACTCGGAAGCGTGCTCCGGGATTCGACGAACAG
CAGCAGCGGTGGCACCGGAAGCGGCGGCGTCCGGGAGACGGTCACCGAGA
GAAAGAAAAGGCAGCAGAAGGTGACTTTGATTCGACTCTTTTTGTGGGTG
GGTTCTTTTTGGGTTACGGTCTTAAAATCTCAAAATCTTAAAATCTTTAA
AATCTTAAAATCTTTGGTTTCTTGAGCGCCCTCCTTGCCTGAGGAGTCAG
TCGGCTTGGCGTGTGCTGAGGAGGATGCTTTTGTTTTTGTTTGGTAGTTG
TATGGGGGGGGGGGGCTATGTGGCCGCCGTGAATCGTGGTGCAAACTTAA
TTAAGGTTTGGACGAGGTAACCTCGTTTTCACCCGCGCGTTAGTTCAAGC
GTTTTGTTGCTGCGGAAGCTTCCTGTCTTGGGTTTTGTTTGTGGATATCT
CGCGTGATCTCGGCGCGTGGGCGTCCGGATGTCCGAGGCTGTGATTCATT
GGCCAGTTATAATTCATAATGTCGTCCGATAAGCTCGGATGGGTTTCCGG
CTGTACACGACTAGCAAACCTCAGACCTGCCCGAGCATCAATCACACCGA
AATTCCCCGCCCGCCCCTCGAGCTTGAAACCACGGTAAGCCCTCTTGAAG
CACCAACTAGCCAACCCTAGAGACTGCCACTCACTTGTCAAATGAAAACG
GCTGCTGTTGCCGTCGCTGTCGCCTCCTCCAATCTGTTTTCCTTTCTTGC
GGCGCGCCATCACGGCCGATGGTGAAACGGATCGAACCGACGGGGGCTGC
TGGCTCGCTCGCCCCTACAACAGGAGAAAGAGAACGCCGCTACAAGCAGC
GTCGGCCGGGATCGCTGGTCGGGCCAGGACAAGCACAGCCGCGACCACCG
CAAGCGCCACCACGCAGTAGCGGCGGGCGGCGTGCGCCTGGACGCCAACA
GGAACGTGGACTACCTGGCCACGCTCTCATCGGGGAACGGCAGCAGCGTC
GCCCGCGGCAGCAGTAGCAGCAGCCCGGCGGCGGGCGGCGGGGCTGGTGG
GTCACGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig109:149512..150570-

>mRNA_C-linearis_contig109.1097.1 ID=mRNA_C-linearis_contig109.1097.1|Name=mRNA_C-linearis_contig109.1097.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig109:149512..150570- (Chordaria linearis ClinC8C monoicous)
GGCGGGGTGGCGAAGAAACTCGGAAGCGTGCTCCGGGATTCGACGAACAG
CAGCAGCGGTGGCACCGGAAGCGGCGGCGTCCGGGAGACGGTCACCGAGA
GAAAGAAAAGGCAGCAGAAGGGCGGGGTGGCGAAGAAACTCGGAAGCGTG
CTCCGGGATTCGACGAACAGCAGCAGCGGTGGCACCGGAAGCGGCGGCGT
CCGGGAGACGGTCACCGAGAGAAAGAAAAGGCAGCAGAAGGAGAAAGAGA
ACGCCGCTACAAGCAGCGTCGGCCGGGATCGCTGGTCGGGCCAGGACAAG
CACAGCCGCGACCACCGCAAGCGCCACCACGCAGTAGCGGCGGGCGGCGT
GCGCCTGGACGCCAACAGGAACGTGGACTACCTGGCCACGCTCTCATCGG
GGAACGGCAGCAGCGTCGCCCGCGGCAGCAGTAGCAGCAGCCCGGCGGCG
GGCGGCGGGGCTGGTGGGTCACGCGAGAAAGAGAACGCCGCTACAAGCAG
CGTCGGCCGGGATCGCTGGTCGGGCCAGGACAAGCACAGCCGCGACCACC
GCAAGCGCCACCACGCAGTAGCGGCGGGCGGCGTGCGCCTGGACGCCAAC
AGGAACGTGGACTACCTGGCCACGCTCTCATCGGGGAACGGCAGCAGCGT
CGCCCGCGGCAGCAGTAGCAGCAGCCCGGCGGCGGGCGGCGGGGCTGGTG
GGTCACGC
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