mRNA_C-linearis_contig109.1092.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1092.1
Unique NamemRNA_C-linearis_contig109.1092.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:120320..120763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.4726138-CDS-C-linearis_contig109:120319..1207421622927416.4726138-CDS-C-linearis_contig109:120319..120742Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 120320..120742 +
1690879689.111792-CDS-C-linearis_contig109:120319..1207421690879689.111792-CDS-C-linearis_contig109:120319..120742Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 120320..120742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.4816084-UTR-C-linearis_contig109:120742..1207631622927416.4816084-UTR-C-linearis_contig109:120742..120763Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 120743..120763 +
1690879689.1236472-UTR-C-linearis_contig109:120742..1207631690879689.1236472-UTR-C-linearis_contig109:120742..120763Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 120743..120763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1092.1prot_C-linearis_contig109.1092.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 120320..120742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1092.1

>prot_C-linearis_contig109.1092.1 ID=prot_C-linearis_contig109.1092.1|Name=mRNA_C-linearis_contig109.1092.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
KKGGVERNAPDYQILEVALGKSSGGYEWGPPVTRGHVRFNGNERCSHSSG
NESVIVFSTQQHYTTAVICRLSTWRLTPGGEDIFDKCRPGEESLEIMSTS
AEASGRCLSLASGKNRSQNKNNKEPIREPNRASVKKHPAD*
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mRNA from alignment at C-linearis_contig109:120320..120763+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1092.1 ID=mRNA_C-linearis_contig109.1092.1|Name=mRNA_C-linearis_contig109.1092.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at C-linearis_contig109:120320..120763+ (Chordaria linearis ClinC8C monoicous)
AAGAAGGGTGGCGTTGAAAGGAATGCGCCAGATTATCAGATCCTTGAGGT
GGCGCTGGGCAAAAGTAGTGGCGGCTACGAATGGGGGCCTCCAGTTACCA
GAGGACACGTGCGTTTCAACGGCAACGAACGCTGCTCACACAGCAGTGGA
AACGAGTCGGTCATTGTTTTTTCCACACAGCAGCACTACACTACAGCAGT
CATCTGCAGATTAAGCACATGGCGGCTCACACCCGGCGGTGAAGACATAT
TCGATAAATGCAGACCAGGCGAAGAAAGTCTCGAGATCATGAGTACGTCA
GCGGAAGCATCAGGGCGGTGTCTCAGCCTGGCTTCCGGGAAAAATAGATC
CCAGAACAAAAATAACAAAGAGCCGATTCGCGAACCAAATAGAGCGAGTG
TGAAAAAACATCCCGCCGACTGACACCCAACAACCCGGGGCCCC
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Coding sequence (CDS) from alignment at C-linearis_contig109:120320..120763+

>mRNA_C-linearis_contig109.1092.1 ID=mRNA_C-linearis_contig109.1092.1|Name=mRNA_C-linearis_contig109.1092.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig109:120320..120763+ (Chordaria linearis ClinC8C monoicous)
AAGAAGGGTGGCGTTGAAAGGAATGCGCCAGATTATCAGATCCTTGAGGT
GGCGCTGGGCAAAAGTAGTGGCGGCTACGAATGGGGGCCTCCAGTTACCA
GAGGACACGTGCGTTTCAACGGCAACGAACGCTGCTCACACAGCAGTGGA
AACGAGTCGGTCATTGTTTTTTCCACACAGCAGCACTACACTACAGCAGT
CATCTGCAGATTAAGCACATGGCGGCTCACACCCGGCGGTGAAGACATAT
TCGATAAATGCAGACCAGGCGAAGAAAGTCTCGAGATCATGAGTACGTCA
GCGGAAGCATCAGGGCGGTGTCTCAGCCTGGCTTCCGGGAAAAATAGATC
CCAGAACAAAAATAACAAAGAGCCGATTCGCGAACCAAATAGAGCGAGTG
TGAAAAAACATCCCGCCGACTGAAAGAAGGGTGGCGTTGAAAGGAATGCG
CCAGATTATCAGATCCTTGAGGTGGCGCTGGGCAAAAGTAGTGGCGGCTA
CGAATGGGGGCCTCCAGTTACCAGAGGACACGTGCGTTTCAACGGCAACG
AACGCTGCTCACACAGCAGTGGAAACGAGTCGGTCATTGTTTTTTCCACA
CAGCAGCACTACACTACAGCAGTCATCTGCAGATTAAGCACATGGCGGCT
CACACCCGGCGGTGAAGACATATTCGATAAATGCAGACCAGGCGAAGAAA
GTCTCGAGATCATGAGTACGTCAGCGGAAGCATCAGGGCGGTGTCTCAGC
CTGGCTTCCGGGAAAAATAGATCCCAGAACAAAAATAACAAAGAGCCGAT
TCGCGAACCAAATAGAGCGAGTGTGAAAAAACATCCCGCCGACTGA
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