mRNA_C-linearis_contig109.1091.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1091.1
Unique NamemRNA_C-linearis_contig109.1091.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:111947..112435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.443433-CDS-C-linearis_contig109:111946..1124351622927416.443433-CDS-C-linearis_contig109:111946..112435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 111947..112435 +
1690879689.1012242-CDS-C-linearis_contig109:111946..1124351690879689.1012242-CDS-C-linearis_contig109:111946..112435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 111947..112435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1091.1prot_C-linearis_contig109.1091.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 111947..112435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1091.1

>prot_C-linearis_contig109.1091.1 ID=prot_C-linearis_contig109.1091.1|Name=mRNA_C-linearis_contig109.1091.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=163bp
MKVRCRCCVSRCRCAIALDCRSFGDVFDWHGFGCTFPGVVDWHLHKQDAG
TTSPPSKQKWPHVAEAASPGAGVKEQLPVLYILTLSSTRFQILTSARVGN
HGGGRVPVICVCEMVPPLAVQVISTRRGSSPSRSKGETGRENNQPANVCK
VPINLPSQQKGR*
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mRNA from alignment at C-linearis_contig109:111947..112435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1091.1 ID=mRNA_C-linearis_contig109.1091.1|Name=mRNA_C-linearis_contig109.1091.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at C-linearis_contig109:111947..112435+ (Chordaria linearis ClinC8C monoicous)
ATGAAAGTAAGGTGCCGTTGCTGCGTGTCACGCTGTCGATGTGCGATAGC
CCTAGATTGTCGGTCGTTTGGGGACGTGTTTGATTGGCACGGTTTTGGTT
GTACATTTCCAGGAGTCGTTGATTGGCACCTACACAAGCAAGACGCTGGT
ACCACCTCGCCCCCTTCCAAACAAAAGTGGCCGCACGTGGCTGAGGCCGC
GTCCCCCGGGGCTGGAGTAAAGGAACAATTACCTGTGCTGTACATACTCA
CCCTTTCATCTACCCGGTTTCAGATACTTACCTCCGCCAGAGTCGGTAAC
CACGGCGGGGGGCGTGTACCAGTGATATGTGTATGTGAAATGGTACCCCC
CCTTGCGGTACAAGTTATTTCGACGAGGCGGGGGTCCTCGCCATCCAGGT
CGAAAGGTGAAACCGGGAGAGAGAACAACCAGCCCGCAAACGTGTGCAAG
GTTCCTATAAATCTCCCCTCACAACAAAAAGGCCGGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig109:111947..112435+

>mRNA_C-linearis_contig109.1091.1 ID=mRNA_C-linearis_contig109.1091.1|Name=mRNA_C-linearis_contig109.1091.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at C-linearis_contig109:111947..112435+ (Chordaria linearis ClinC8C monoicous)
ATGAAAGTAAGGTGCCGTTGCTGCGTGTCACGCTGTCGATGTGCGATAGC
CCTAGATTGTCGGTCGTTTGGGGACGTGTTTGATTGGCACGGTTTTGGTT
GTACATTTCCAGGAGTCGTTGATTGGCACCTACACAAGCAAGACGCTGGT
ACCACCTCGCCCCCTTCCAAACAAAAGTGGCCGCACGTGGCTGAGGCCGC
GTCCCCCGGGGCTGGAGTAAAGGAACAATTACCTGTGCTGTACATACTCA
CCCTTTCATCTACCCGGTTTCAGATACTTACCTCCGCCAGAGTCGGTAAC
CACGGCGGGGGGCGTGTACCAGTGATATGTGTATGTGAAATGGTACCCCC
CCTTGCGGTACAAGTTATTTCGACGAGGCGGGGGTCCTCGCCATCCAGGT
CGAAAGGTGAAACCGGGAGAGAGAACAACCAGCCCGCAAACGTGTGCAAG
GTTCCTATAAATCTCCCCTCACAACAAAAAGGCCGGTAGATGAAAGTAAG
GTGCCGTTGCTGCGTGTCACGCTGTCGATGTGCGATAGCCCTAGATTGTC
GGTCGTTTGGGGACGTGTTTGATTGGCACGGTTTTGGTTGTACATTTCCA
GGAGTCGTTGATTGGCACCTACACAAGCAAGACGCTGGTACCACCTCGCC
CCCTTCCAAACAAAAGTGGCCGCACGTGGCTGAGGCCGCGTCCCCCGGGG
CTGGAGTAAAGGAACAATTACCTGTGCTGTACATACTCACCCTTTCATCT
ACCCGGTTTCAGATACTTACCTCCGCCAGAGTCGGTAACCACGGCGGGGG
GCGTGTACCAGTGATATGTGTATGTGAAATGGTACCCCCCCTTGCGGTAC
AAGTTATTTCGACGAGGCGGGGGTCCTCGCCATCCAGGTCGAAAGGTGAA
ACCGGGAGAGAGAACAACCAGCCCGCAAACGTGTGCAAGGTTCCTATAAA
TCTCCCCTCACAACAAAAAGGCCGGTAG
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