mRNA_C-linearis_contig109.1090.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1090.1
Unique NamemRNA_C-linearis_contig109.1090.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 5.690e-61
Identity = 101/162 (62.35%), Postives = 125/162 (77.16%), Query Frame = 1
Query:    1 MQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKLVEG 486
            + WH+AT V VRFRGHKGDQ+++G+ VTRVR+VA GA SQIGAGGGAVA+LVELM+CH+ALP  APLCS+R +      V GY +AL A  QI+E AG +PK  GLHSLRIG AT +AAGG +PDR+++ EGRWK+ SG+ K YTRNN+ D   VS KL +G
Sbjct:  129 LHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKIYTRNNMVDVDMVSRKLAKG 288          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 3.320e-59
Identity = 102/162 (62.96%), Postives = 126/162 (77.78%), Query Frame = 1
Query:    1 MQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKLVEG 486
            + WH+AT V VRFRGHKGDQ+++G+ VTRVR+VA GA SQIGAGGGAVA+LVELM+CH+ALP  APLCS+R +      V GY +AL A RQI++ AG DPK  GLHSLRIG AT +AAGG +PDR+++ EGRWK+ SG+ K YTRNN+ D   VS KL +G
Sbjct:  746 LHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYPKALSALRQIVDKAGGDPKQVGLHSLRIGAATTLAAGGDVPDRIIQSEGRWKEASGTFKIYTRNNMVDIDMVSRKLAKG 907          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 7.710e-44
Identity = 90/159 (56.60%), Postives = 108/159 (67.92%), Query Frame = 1
Query:    1 MQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKL 477
            M W QA RVE+RFRGHKGDQ Q G    R RD   G RS   A GGAVAL+V  +SCH  LP SAPL SYR   EV   VL Y +AL+A R+I+E +G +PK F LHSLRIGGA+ +AAGG + +RV++REGRWK  S + K YT NN +D+  VS  L
Sbjct:  285 MHWQQADRVEIRFRGHKGDQGQIGDVRARTRDEVHGPRSGYRANGGAVALMVASLSCHATLPDSAPLSSYRSGQEVK--VLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWK--SDAYKVYTVNNSEDSQRVSRTL 439          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: A0A6H5JL16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL16_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.610e-33
Identity = 61/106 (57.55%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  163 MSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKLV 480
            M+CH+ALP  APLCS R +      V GY +AL A RQI+E AG DPK  GLHSLRIG  T +AAGG +PDR  +REGRWK+ S +LK  TRNN+ D   VS KL 
Sbjct:    1 MACHLALPEDAPLCSCRCRRSKTIKVWGYSKALSALRQIVEEAGGDPKQVGLHSLRIGATTTLAAGGDVPDRTTQREGRWKEGSNTLKICTRNNMVDVDMVSRKLA 106          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: A0A6H5K297_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K297_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.080e-14
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  151 LVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKLV 480
            +VEL+S +  LP  APL ++   G+    +    +A  A RQ++ LAG  P+ + LHSLRIGGAT +AAGG  P+ V+ REGRW  +S S + Y RN   DAS VS  L 
Sbjct:    1 MVELLSLYTFLPSHAPLVAFGV-GQGQWAMWTKCQATVALRQVVALAGLQPEEYALHSLRIGGATFLAAGGASPE-VLRREGRWSGES-SHQCYVRNVGGDASWVSEVLA 107          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-10
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   13 QATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAG 294
            +A RVEVRFR  KGDQ ++G+  TR R    G    +  GGGAV +++EL+SC   LP SAPL ++   GE    V   R A +A RQ++ LAG
Sbjct:  237 EADRVEVRFRSSKGDQFRKGAVCTRARP---GPPQSVECGGGAVDVMIELLSCFPVLPSSAPLVAFGT-GEGRWSVWTRRHATEALRQVVSLAG 326          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: A0A6H5KE53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE53_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.680e-9
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  253 RALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKLV 480
            +A  A RQ++ LAG  P+ + LHSLRIGGAT +AA G  P+ V+ REGRW  +S S + Y RN   DAS VS  L 
Sbjct:   36 QATVALRQVVALAGLQPEEYALHSLRIGGATFLAAEGASPE-VLRREGRWSGES-SHQCYVRNVGGDASWVSEVLA 109          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: UPI0018D9EF2A (uncharacterized protein LOC119719490 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9EF2A)

HSP 1 Score: 62.4 bits (150), Expect = 1.750e-8
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  241 LGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKL 477
            L Y R L  F+  +   G +PK FGLHSLR GGATA A  G +PDR+ ++ GRW+ ++     Y   +L+D  +VS  L
Sbjct:  233 LSYSRCLDIFKSALSSVGVNPKRFGLHSLRAGGATAAARIG-VPDRLFKKHGRWRSETAK-DGYVHESLEDRLSVSKML 309          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: UPI00148A347B (uncharacterized protein LOC117682718 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A347B)

HSP 1 Score: 59.7 bits (143), Expect = 4.280e-8
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  157 ELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKL 477
            E + C I+  GS      R+K       L Y R  + F +      D+ K++GLHSLR GGATA A  G IPDR+ +R GRW+ +S     Y ++ L +  +VS KL
Sbjct:   73 EYVFCAISKSGSGYRLRNREKP------LSYTRVRELFIEAFTGIVDNIKVYGLHSLRSGGATASAVRG-IPDRIFKRHGRWRSESAK-DGYVQDPLSERLSVSKKL 171          
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Match: UPI001458CFAC (integrase/recombinase xerD homolog n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458CFAC)

HSP 1 Score: 59.7 bits (143), Expect = 1.340e-7
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  235 VVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKL 477
            V L Y RA +   + +E  G D  LFG+HSLR GGATA AA G + DR+ ++ GRWK +      Y R  + D  +VS  L
Sbjct:  198 VRLSYTRAREILLEALEAVGLDKTLFGVHSLRSGGATAAAAAG-VSDRLFKKHGRWKSEKAK-DGYVRERVHDLLSVSQHL 276          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K718_9PHAE5.690e-6162.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP7_9PHAE3.320e-5962.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCI7_9PHAE7.710e-4456.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL16_9PHAE2.610e-3357.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K297_9PHAE2.080e-1445.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3G1_9PHAE1.000e-1045.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE53_9PHAE1.680e-951.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0018D9EF2A1.750e-843.04uncharacterized protein LOC119719490 n=1 Tax=Patir... [more]
UPI00148A347B4.280e-838.32uncharacterized protein LOC117682718 n=2 Tax=Crass... [more]
UPI001458CFAC1.340e-743.21integrase/recombinase xerD homolog n=1 Tax=Pecten ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:30872..31360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927417.0935473-CDS-C-linearis_contig109:30871..313601622927417.0935473-CDS-C-linearis_contig109:30871..31360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 30872..31360 -
1690879689.2841737-CDS-C-linearis_contig109:30871..313601690879689.2841737-CDS-C-linearis_contig109:30871..31360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 30872..31360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1090.1prot_C-linearis_contig109.1090.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 30872..31360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1090.1

>prot_C-linearis_contig109.1090.1 ID=prot_C-linearis_contig109.1090.1|Name=mRNA_C-linearis_contig109.1090.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=163bp
MQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVAL
LVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDD
PKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQ
DASAVSSKLVEG*
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mRNA from alignment at C-linearis_contig109:30872..31360-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1090.1 ID=mRNA_C-linearis_contig109.1090.1|Name=mRNA_C-linearis_contig109.1090.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at C-linearis_contig109:30872..31360- (Chordaria linearis ClinC8C monoicous)
ATGCAGTGGCACCAAGCCACACGGGTGGAAGTTAGATTCAGGGGTCACAA AGGAGACCAGACCCAGCGGGGGTCATCGGTGACTCGCGTACGGGACGTCG CGGTCGGCGCGCGTTCGCAGATAGGCGCCGGCGGCGGTGCCGTGGCGCTC TTGGTGGAACTTATGTCTTGCCACATTGCGTTACCTGGAAGCGCACCTCT GTGCTCGTACCGTAAAAAGGGAGAAGTTGGAACCGTAGTGTTGGGATACA GAAGAGCACTGAAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACGAC CCGAAGCTGTTTGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCAAT GGCTGCGGGTGGGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAGAT GGAAGCAGAAGTCGGGCTCGCTCAAAAAGTACACTAGAAATAATCTGCAA GACGCGAGTGCGGTATCAAGTAAACTAGTAGAGGGATGA
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Coding sequence (CDS) from alignment at C-linearis_contig109:30872..31360-

>mRNA_C-linearis_contig109.1090.1 ID=mRNA_C-linearis_contig109.1090.1|Name=mRNA_C-linearis_contig109.1090.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at C-linearis_contig109:30872..31360- (Chordaria linearis ClinC8C monoicous)
ATGCAGTGGCACCAAGCCACACGGGTGGAAGTTAGATTCAGGGGTCACAA
AGGAGACCAGACCCAGCGGGGGTCATCGGTGACTCGCGTACGGGACGTCG
CGGTCGGCGCGCGTTCGCAGATAGGCGCCGGCGGCGGTGCCGTGGCGCTC
TTGGTGGAACTTATGTCTTGCCACATTGCGTTACCTGGAAGCGCACCTCT
GTGCTCGTACCGTAAAAAGGGAGAAGTTGGAACCGTAGTGTTGGGATACA
GAAGAGCACTGAAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACGAC
CCGAAGCTGTTTGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCAAT
GGCTGCGGGTGGGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAGAT
GGAAGCAGAAGTCGGGCTCGCTCAAAAAGTACACTAGAAATAATCTGCAA
GACGCGAGTGCGGTATCAAGTAAACTAGTAGAGGGATGAATGCAGTGGCA
CCAAGCCACACGGGTGGAAGTTAGATTCAGGGGTCACAAAGGAGACCAGA
CCCAGCGGGGGTCATCGGTGACTCGCGTACGGGACGTCGCGGTCGGCGCG
CGTTCGCAGATAGGCGCCGGCGGCGGTGCCGTGGCGCTCTTGGTGGAACT
TATGTCTTGCCACATTGCGTTACCTGGAAGCGCACCTCTGTGCTCGTACC
GTAAAAAGGGAGAAGTTGGAACCGTAGTGTTGGGATACAGAAGAGCACTG
AAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACGACCCGAAGCTGTT
TGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCAATGGCTGCGGGTG
GGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAGATGGAAGCAGAAG
TCGGGCTCGCTCAAAAAGTACACTAGAAATAATCTGCAAGACGCGAGTGC
GGTATCAAGTAAACTAGTAGAGGGATGA
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