mRNA_C-linearis_contig108.1084.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 691 bits (1783), Expect = 2.580e-239 Identity = 340/467 (72.81%), Postives = 384/467 (82.23%), Query Frame = 2
Query: 635 AESEGCFTMTDIYNWRGTESINGVVSSKGPIYQLDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGDDCEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVR---------GFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVSDGRPSDNTFYNNEITNTAGGVKLKYSDNLVVINNEFTGTTELEFFDAQGTVWSGNTLPSSGVCVDIVTSDDGNSVLASTFASAEGLP 2008
AESEGCFT+TD+YN+RGTE+ SSKGP+Y LD +GS +T+P VT KWLL AELYVT+GA+FYC GS GGDCDELRIQSTG DDWYEVRGHGGS+YF T+VTSWDTPN PQE YEGGRSFLNCVSEKLTG+ C+G AK++MGECRMD+INSE GYMG+FDSESYGLTWKVR GFC+DLSNP+VF+TTNVYGDI SDIHHMYYGHY+YGHQGGVWT+N+MHDN QY +A N+VYNN NHGIIASKRCNNVKIYDN V DGG DAVGIFLHRSSD AEVYGN I+NMPDAGIALLES +ADIHDN ID VQ+GIRMSLGS N+VYDN FNDCSD+GLYTY GSD P VS+GRP+ NTF NN++TN+AGGVK K SDN+VV NNEFTGT ELEF+DAQ T WSGN+LP SGVC+D +TSDDGNSV STF+S+ G+P
Sbjct: 17 AESEGCFTLTDLYNFRGTENDG---SSKGPLYMLDGSGSKITAPTS----VTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPD--VSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLP-SGVCIDNITSDDGNSVPPSTFSSSSGVP 461
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 658 bits (1698), Expect = 3.010e-220 Identity = 324/460 (70.43%), Postives = 368/460 (80.00%), Query Frame = 2
Query: 542 VMEIPTSC-DSGNVPTFRYAATSGEVGKGRLYAESEGCFTMTDIYNWRGTESINGVVSSKGPIYQLDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGDDCEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVRGFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVSDGRPSDNTFYNNEITNTAGGVKLKYSDNLVVINNEFTGTTELEFFDAQGTVWSGNTL 1918
+MEI +SC D + P+FRYAA+SG G RLYAE EGCFTMTD+YN+RGTE+ SSKGP+Y LDD G+ + P I TN WLL AELY+T G VFYCKG+SAGGDC++LRIQSTGSDD++EVRGHGGSLYFEDTIVTSWDTPN PQE YE GRSFLNCVSEKLTGDDCEGNAK+EMGECRMD+INSE Y+GYFDSESYG+TWKVRGFC+DLSNPEVF+ TNVYGD+ GSDIHH+YYGHY+YGHQGGVWT+NKMHDNWQYGFDPHDDSDYLTIA NEVYNNVNHGIIASKRCNNVKI++N V DGGA A GIFLHRSSD A V+ NTI NM DAGIA+LES DA I+ N I+ +YGIRMSLGS NN VY N+F D S +GLYTYEGSD P VSDGRPS N N + + GVK+K D+ N F EF ++ T+WSGN +
Sbjct: 414 LMEISSSCGDDEDRPSFRYAASSGVAG--RLYAEGEGCFTMTDLYNFRGTENDG---SSKGPVYMLDDDGTKLDIPSGI----TNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPD--VSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDI 862
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 637 bits (1644), Expect = 1.950e-217 Identity = 335/591 (56.68%), Postives = 401/591 (67.85%), Query Frame = 2
Query: 245 CSNGLAGYEASDVCCPVACGQCGGSGCS--GLEGGGDACCTANIKAAGTLCSVQHAAPCNIDTDTVDVVAATPVGSTPSPVSPTAXXSSPPTSVEHSSPTPVMEIPTSCDSGNVPTFRYAATSGEVGKGRLYAESEGCFTMTDIYNWRGTESINGVVSSKGPIYQLDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGDDCEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVRGFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVSDGRPSDNTFYNNEITNTAGGVKLKYSDNLVVINNEFTGTTELEFFDAQGTVWSGNTLPSSGVCVDIVTSDDGNSVLASTF-ASAEGLP 2008
CSNG G ++ ++CC V CG CGGS C G G CC I G LCS +APC +D DV +GN P AE EGCFT+TD+YN+R + S+KGPI+ LDD+ + V +P + +NKWLLTAEL++T GAVFYC+GSS GGDCDELRIQSTG D++EVR HGGS+YFE TIVTSWDTPN PQ Y GGRSFLNCVSEKLTG+ C G A++EMGECRMD+INSE GY+GYFDSESYGLTWKVRGFC+DLSNP+VFDTTNVYG++IGSDIHH YYG Y+YGHQGGVW +N+MHDN QYGFDPHDDSDYLT IIASKRCNNV+IY+N VYDGG A GIFLHRSSD+A V+ N +++M DAG+A+LESM+ADI++N +V++GIR+SLGS+ N+V++N F D S GLYTY+GSD PT+GVSDGRPSDN F NN I N GVK+K D+ V+ +N FTGT+ELEFFDAQ T W GNTLP GVC+ + SDDG + STF GLP
Sbjct: 12 CSNGFVGVQSENICCHVDCGTCGGSECRRRGKGLGAADCCRNYISKNGALCSENLSAPCIMD----DV------------------------------------------TGNTPD----------------AEGEGCFTITDLYNFR----LESDGSAKGPIFNLDDSYNTVLNPKVL----SNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLP-QGVCIKNIHSDDGIDIELSTFDRRTAGLP 519
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 566 bits (1460), Expect = 6.100e-191 Identity = 283/458 (61.79%), Postives = 340/458 (74.24%), Query Frame = 2
Query: 647 GCFTMTDIYNWRGTESINGVVSSKGPIYQLDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGDD-CEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVRGFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVSDGRPSDNTFYNNEITNTAGGVKLKYSDNLVVINNEFTGTTELEFFDAQGTVWSGNTLPSSGVCVDIVTSDDGNSVLASTFASAEGLPGAC 2017
GCFT++D+Y W+G + NG +SKGP++ LD + E T KWLLTA+L+VT GA YC+G GG+C ELRI+ST D++E+RGHGG+LYFEDTIVTSWD PQE Y+ GRSF+ CVSE LTG+D C A + MGECRMD+I+SE GY+GY SE+YG+TWKVRGFC DLSNP+VFD NVYGD+ GSDIHHMYYG Y++GHQGGVWT+N MHDN QYGFDPHDDSDYL IA N+VYNNVNHGIIASKRCNNVKIYDN VYDGGADA GIFLHRS D +EVYGNTI NM DAGIA+LE+ DIHDN +D ++GIR+ LGS+NN V+DN F + + G++TY GSD P V GRP DN FYNN I T GVK+K SDN+ + NN F+GTTE+EF +A VWSGN++P++ DI D NS TF + GLP C
Sbjct: 10 GCFTLSDLYAWQGFYN-NG--NSKGPVFVLDSNDRV----DETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPW--VGGGRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIPTNTCLEDI----DNNS----TFTGSSGLPLEC 447
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 527 bits (1357), Expect = 6.640e-177 Identity = 258/353 (73.09%), Postives = 287/353 (81.30%), Query Frame = 2
Query: 659 MTDIYNWRGTESINGVVSSKGPIYQLDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGDDCEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWK--------VRGFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCS 1693
MTD+YN+RGTE SSKGP+Y LDD G+ + P I TN WLL AELY+T G VFYCKG+SAGGDC++LRIQSTGSDD++EVRGHGGSLYFEDTIVTSWDTPN PQE YEGGRSFLNCVSEKLTGDDCEGNAK+EMGECRMD+INSE Y+GYFDSESYG+TWK VRGFC+DLSNPEVFD TNVYGD+IGSDIHH+YYGHY+YGHQGGVWT+NKMHDNWQYGFDPHDDSDYLT IIASKRCNNVKI++N V DGGA AVGIFLHRSSD A V+ NTI NM DAGIALLE+ DA I+ N+I+ +YGIRMSLGS NN VY N+F D S
Sbjct: 1 MTDLYNFRGTEKDG---SSKGPVYMLDDDGTKLDIPSGI----TNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTR------------IIASKRCNNVKIFENEVRDGGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDIS 334
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 526 bits (1354), Expect = 2.890e-176 Identity = 267/425 (62.82%), Postives = 303/425 (71.29%), Query Frame = 2
Query: 734 LDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGDDCEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVRGFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVSDGRPSDNTFYNNEITNTAGGVKLKYSDNLVVINNEFTGTTELEFFDAQGTVWSGNTLPSSGVCVDIVTSDDGNSVLASTFASAEGLP 2008
LDD+G+ +TSP VT KWLL +ELYVT GA+FYC GS GGDCDELRIQSTG DDWYEVRGHGGS+YF T+VTSWDTPN PQE YEGGRSFLNCVSEKLTG+ C+G AK++ GECRMD+INSE GYMG+FD+ESYGLTWKVRGFC+DLSNP+VF+TTNVYGDI S+IHHMYYG Y+YGHQGGVWT+N+MHDN QYGFDPHDDSDYLTIA ASKRCNNV+IY+N V DGG +AVGIFLHRSSD AEVYG G DAP VS+GRP+ NTF NN+ITNTAGGVK+K SDN+V+ NN+FTGT ELEFFDAQ T WS N+LP SGVC+D VTSDDGNSV STF+S+ G+P
Sbjct: 2 LDDSGNKITSPTS----VTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPD--VSNGRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDNSLP-SGVCIDNVTSDDGNSVPPSTFSSSSGVP 364
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 457 bits (1175), Expect = 5.390e-143 Identity = 241/471 (51.17%), Postives = 307/471 (65.18%), Query Frame = 2
Query: 623 GRLYAESEGCFTMTDIYNWRGTESINGVVSSKGPIYQLDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTG--DDCEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVRGFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVS-DGRPSDNTFYNNEITNTAGGVKLKYSDNLVVINNEF---TGTTELEFFDAQGTVWSGNTLPSSGVCVDIVTSDDGNSVLASTFASAEGLPGAC 2017
G+ Y GC T+TDIY +G + +G P++ LD ++V G T WLL +++V G++ G AGGD LRIQSTGS D+YE+RGHGGSL F DT VTSWDT Y+ RSF+ CVSE+L D C+G+A + MGECRMD+I SE G MGY +ESYG++WKVRG+C + NPEVF+ T V GDII SDI+ MYYGHY++GH GG+WT NKMHDN QYGFDPHDDSD L IA N V+ N NHGIIASKRCNNVKI+ N VYDGG AVGIFLHRSSD EV+GNT+Y+M DAG+A++ESM A IHDN+ NV+YGIR+S+G+A N V +N+F +C +G+YTY+G+D P DG DNTF+ N + GGVK++ ++ +V +N F + E F D + VW+ N +P DI D N S + LP C
Sbjct: 398 GKNYIRGGGCATLTDIYTAQGGHNDDG------PLFVLDSNDNVV------GGSPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTVE---GGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPD-----DICLKGDKN---IDYMKSYDSLPDLC 845
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 444 bits (1142), Expect = 8.270e-141 Identity = 248/479 (51.77%), Postives = 306/479 (63.88%), Query Frame = 2
Query: 536 TPVMEIPTSCDSGNVPTFRYAATSGEVGKGRLYAESEGCFTMTDIYNWRGTESINGVVSSKGPIYQLDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGD--DCEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVRGFCE---DLSNP---EVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVSDGRPSDNTFYNNEITNTAG--GVKLKYSDNLVVINNEFTGTTELEFFDAQGTVWSGNTLPSSGVCVD 1942
TP TSCDS F + ++ Y E GC T+T +Y E+ G GP+Y LD+ +V G T WLL L V G+ G++A GD D LR+ ST SDD+ EVRG+GG+L+F+ T VTSWDT N +E GRSF+NCV++ DC+G + E GECRMD+I+S G MG+FD+ESYGLTWKVRG CE D P E+F+ NVYGDI+ S+I+ MYYGHY+YGHQGGVW N M DN QYGFDPHDDSD LTI+ N VY N NHGIIASKRCNNVKI++N VYDGG DAVGIFLHRSSD AEV+ N +YNM DAG+A++ES DA+I+DNS N +YGIR+SLGS N + +N F+ + +GLYTY GSD P S+GRPSDN F N I GV +K D+ V I+N FTG + EF D+ T W NT G C+D
Sbjct: 169 TPTPSATTSCDSAATVRF-----TDDIA----YFEGGGCGTLTQMY-----EAQEG----DGPLYVLDENNDVV------GGTPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT---GGGCLD 619
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 431 bits (1109), Expect = 2.580e-133 Identity = 259/571 (45.36%), Postives = 321/571 (56.22%), Query Frame = 2
Query: 242 TCSNGLAGYEASDVCCPVACGQCGGSGCSGLEGG--GDACCTANIKAAGTLCSVQHAAPCNIDTDTVDVVAATPVGSTPSPVSPTAXXSSPPTSVEHSSPTPVMEIPTSCDSGNVPTFRYAATSGEVGKGRLYAESEGCFTMTDIYNWRGTESINGVVSSKGPIYQLDDTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGD--DCEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVRGFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVSDGRPSDNTFYNNEITNTAGGVKLKYSDNLVVINNEFTGTTELEFFDAQGTVWSGNTLPSSGVCVD 1942
TC L G D CC CG+CGG G G CCT++I LCSV AAPC +D D+ G TP+P XX G + + ++ S G GC T+TD+YN + S GP+Y LD + +IV+ G P T WLLT+ L + G Y G+SAGGD D LRIQST DD++E+RG GGSL F +T VTSWDT + EYEGGRSF+NCV++ D C G + E GECRMD+I+S G MG+FD+ESYGLTWKVRG C DLSN E+ D NVYGDI GS+I+ MYYG Y+YGHQGGVWTDN M DN YGFDPHDDSD LTIA N VY N NHGIIASKRCNNV+IY AL+ES A+I+DN+I+N +YGIR+SLGSA+N+++DNTF+ S +GLYTY+GSD P +DGR DN+F N I+NT +K+K D+ NN F EF D+ TVW+ N + G C+D
Sbjct: 313 TCDGVLKG----DYCCSAGCGECGGXXXXXXXXGLTGADCCTSDIS---NLCSVTGAAPCIVDGDST--------GPTPTPXXXXXXX--------------XXXXXXXXXXGTIASISTSSDSSSFSGG-------GCATLTDMYNTQ---------SGSGPLYVLDSSNNIVSGGGGSASP-TGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVYGNGNHGIIASKRCNNVEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFEDSTDTVWTNNDI--GGGCLD 832
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 6.580e-129 Identity = 225/449 (50.11%), Postives = 288/449 (64.14%), Query Frame = 2
Query: 584 TFRYAATSGEVGKGRLYAESE-------GCFTMTDIYNWRGTESINGVVSSKGPIYQLD-DTGSIVTSPGEIGDPVTNKWLLTAELYVTSGAVFYCKGSSAGGDCDELRIQSTGSDDWYEVRGHGGSLYFEDTIVTSWDTPNNAPQEEYEGGRSFLNCVSEKLTGDD--CEGNAKDEMGECRMDLINSEFGYMGYFDSESYGLTWKVRGFCEDLSNPEVFDTTNVYGDIIGSDIHHMYYGHYTYGHQGGVWTDNKMHDNWQYGFDPHDDSDYLTIARNEVYNNVNHGIIASKRCNNVKIYDNVVYDGGADAVGIFLHRSSDFAEVYGNTIYNMPDAGIALLESMDADIHDNSIDNVQYGIRMSLGSANNNVYDNTFNDCSDFGLYTYEGSDAPTEGVSDGRPSDNTFYNNEITNTAGGVKLKYSDNLVVINNEFTGTTELEFFDAQGTV 1900
+ RYA T+ RLY ES GC T+ I+ R + KGP+Y +D D+G++ TS T WLLT ELYV G GS AGGD DELR+ ST ++ + +R HGGSL F T V SWDT N+P E+ GRS+++ +SE +T +D CEGNAK+ MGE RMD+ +SE GY+GY+DSESYGLTWKVRGFCED SNPEVFD NVYG++ SDIHHM +G YTYGHQ G W NKMHDN YGFDPHDDSD+LTI NEVYNN HGIIASKRCN V I N VY G + GIFLHRSSD A V GN +++ DAG+A+LES +AD+ +N+ +N +YG+R S+G A+N +NT ++ +++ Y+Y G+D P + VS GR +N F N + +K+K +D ++N F E DA G V
Sbjct: 45 SIRYAGTTA-----RLYLESADNGTTRGGCVTLGQIWESR---------AGKGPLYAVDPDSGNVSTS-------ATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLST-NETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEP-DVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVF------EVGDADGLV 464 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig108.1084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig108.1084.1 >prot_C-linearis_contig108.1084.1 ID=prot_C-linearis_contig108.1084.1|Name=mRNA_C-linearis_contig108.1084.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=617bp MKIAWHSVVMLPVLLLPVVMTQAQTCSNGLAGYEASDVCCPVACGQCGGSback to top mRNA from alignment at C-linearis_contig108:462210..467299- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig108.1084.1 ID=mRNA_C-linearis_contig108.1084.1|Name=mRNA_C-linearis_contig108.1084.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5090bp|location=Sequence derived from alignment at C-linearis_contig108:462210..467299- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig108:462210..467299- >mRNA_C-linearis_contig108.1084.1 ID=mRNA_C-linearis_contig108.1084.1|Name=mRNA_C-linearis_contig108.1084.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3702bp|location=Sequence derived from alignment at C-linearis_contig108:462210..467299- (Chordaria linearis ClinC8C monoicous)back to top |