mRNA_C-linearis_contig107.1053.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1053.1
Unique NamemRNA_C-linearis_contig107.1053.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:444860..446598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1376
Cds size1353
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1053.1prot_C-linearis_contig107.1053.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 444860..446576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.9436624-CDS-C-linearis_contig107:444859..4450791622927402.9436624-CDS-C-linearis_contig107:444859..445079Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 444860..445079 -
1690879680.620264-CDS-C-linearis_contig107:444859..4450791690879680.620264-CDS-C-linearis_contig107:444859..445079Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 444860..445079 -
1622927402.954654-CDS-C-linearis_contig107:445443..4465761622927402.954654-CDS-C-linearis_contig107:445443..446576Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 445444..446576 -
1690879680.6293054-CDS-C-linearis_contig107:445443..4465761690879680.6293054-CDS-C-linearis_contig107:445443..446576Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 445444..446576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.963973-UTR-C-linearis_contig107:446576..4465981622927402.963973-UTR-C-linearis_contig107:446576..446598Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 446577..446598 -
1690879680.6374903-UTR-C-linearis_contig107:446576..4465981690879680.6374903-UTR-C-linearis_contig107:446576..446598Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 446577..446598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1053.1

>prot_C-linearis_contig107.1053.1 ID=prot_C-linearis_contig107.1053.1|Name=mRNA_C-linearis_contig107.1053.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=451bp
MKGKTGSGDGAAGAGKWGVDGDGPEAAELLFSAFPPSSDEDSEDERRSPA
GRKRTGGISHTRKSGAAGAPPASTAAATSTAAAAGVQGGGGGGSGGGGSS
SSSIVGGGASGSDGGGSRSGGGGSGGDGGDDKRSEASGRAERENEEEEEE
DDDDDEGAAEGGGSAEDHKEENDSSSAMSGALAAGDTDLDDDPPVAGGAA
AGAEEQQLVHDVEGAAAAAPEAPAAGDDNNAEVAANNHGESVDLTQSDEE
EEEEEEEGRGPCPLCGKSFPLTKIDAHANACLDESIAVPPAEGPNAASGG
GGSGGAGGGGSSSPASSAQGAAGIAGGDVEGKVEGKGTCLMCSKLFPFAE
LQAHTNQCLDADIQKDEEKKKKKERAERQEKSKRNRPVEGVLGDISGAES
SGGGARSSRVKKEHGNLPAFDVASASDGGSSAHEDKPGRANSGGGKRKSR
G
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mRNA from alignment at C-linearis_contig107:444860..446598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1053.1 ID=mRNA_C-linearis_contig107.1053.1|Name=mRNA_C-linearis_contig107.1053.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1739bp|location=Sequence derived from alignment at C-linearis_contig107:444860..446598- (Chordaria linearis ClinC8C monoicous)
AGGCCTAGGAACGTCGAAGAAGATGAAGGGCAAGACGGGAAGCGGGGATG
GGGCCGCGGGAGCAGGAAAGTGGGGCGTGGACGGAGATGGTCCGGAAGCG
GCAGAATTGCTATTTTCCGCGTTTCCTCCGTCGTCCGACGAGGACTCCGA
AGATGAACGCCGGTCCCCCGCCGGTCGCAAGCGCACCGGCGGAATCAGCC
ACACCAGAAAGAGCGGCGCTGCGGGCGCACCGCCGGCGTCAACGGCCGCG
GCGACGTCAACAGCGGCGGCCGCAGGTGTCCAGGGCGGCGGCGGCGGCGG
CAGCGGCGGCGGCGGTAGTAGCAGCAGCAGCATCGTAGGTGGCGGCGCGA
GCGGTTCGGACGGCGGTGGGAGCCGGAGCGGTGGTGGCGGCAGCGGAGGC
GACGGTGGCGATGACAAGAGATCGGAAGCTTCGGGGCGGGCGGAAAGGGA
GAACGAGGAGGAGGAAGAGGAGGACGACGACGACGATGAGGGTGCCGCAG
AGGGTGGCGGGTCGGCGGAGGACCACAAAGAAGAAAACGATTCCAGCAGC
GCCATGTCTGGGGCGCTCGCCGCTGGGGACACAGACCTCGACGACGACCC
GCCGGTTGCCGGAGGGGCTGCTGCGGGGGCCGAGGAACAACAACTCGTAC
ATGATGTAGAGGGGGCGGCGGCAGCAGCACCAGAAGCACCAGCAGCAGGC
GATGACAACAACGCGGAGGTAGCCGCCAACAATCACGGCGAGAGCGTCGA
TCTGACCCAAAGCGACGAAGAAGAGGAGGAGGAAGAGGAAGAAGGCCGAG
GTCCATGCCCGCTGTGTGGGAAGAGCTTCCCGCTAACTAAGATAGATGCT
CACGCCAACGCCTGTTTGGATGAGAGCATCGCCGTCCCGCCGGCCGAAGG
CCCCAACGCGGCGAGCGGGGGCGGTGGAAGCGGGGGCGCGGGTGGAGGCG
GAAGCAGCTCGCCCGCGAGTTCGGCCCAGGGCGCTGCTGGTATTGCTGGC
GGTGATGTCGAAGGCAAAGTCGAAGGCAAAGGCACGTGCCTGATGTGCTC
GAAACTCTTCCCGTTTGCGGAGCTGCAGGCCCACACCAACCAATGCTTGG
ATGCGGATATCCAAAAGGACGAGGAGAAGAAGAAGAAGAAAGAGCGGGCG
GAGAGGTGGGTGGTGTGGGGTTGCCGGTGGCGTCTGTTGCTGGGTTGCAG
TTTTTGGTTTGAATAAATCTCCATTTAGCGTTGGCTCTGTCTCGGGGCTA
TGCTGTGCCGTGTTGCTTTTCCGGCTTCCTGTTGTGTGGCCCCCGGAGAT
GCGATTGACTTGATGTTTAATTTGTGCACAAAAATGCACCGCTTCTCTGT
AGGCACTAGACCCCTTTTTGCTTTACTTGGACCCCCCTCAAGCTCAACTG
CGTCTCCCGTACATGGATCCCAGCCAGAACACAAAACCCACCATCCTTTT
TGTTCTTCGCGATGCGAGTATGCCGCGCGCATTTCACACACACAACGACC
ATCACAACAAAACTACCAGGCAGGAGAAGTCGAAGAGGAATCGCCCGGTC
GAGGGCGTTCTGGGCGACATCAGCGGGGCCGAGTCCAGCGGCGGCGGAGC
TCGCTCCTCCCGCGTCAAGAAGGAGCACGGTAACCTCCCCGCCTTCGATG
TCGCTTCGGCTTCCGACGGCGGCAGCAGCGCGCACGAGGACAAGCCTGGT
CGAGCCAATAGCGGCGGCGGCAAGCGGAAGAGTAGAGGG
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Coding sequence (CDS) from alignment at C-linearis_contig107:444860..446598-

>mRNA_C-linearis_contig107.1053.1 ID=mRNA_C-linearis_contig107.1053.1|Name=mRNA_C-linearis_contig107.1053.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at C-linearis_contig107:444860..446598- (Chordaria linearis ClinC8C monoicous)
ATGAAGGGCAAGACGGGAAGCGGGGATGGGGCCGCGGGAGCAGGAAAGTG
GGGCGTGGACGGAGATGGTCCGGAAGCGGCAGAATTGCTATTTTCCGCGT
TTCCTCCGTCGTCCGACGAGGACTCCGAAGATGAACGCCGGTCCCCCGCC
GGTCGCAAGCGCACCGGCGGAATCAGCCACACCAGAAAGAGCGGCGCTGC
GGGCGCACCGCCGGCGTCAACGGCCGCGGCGACGTCAACAGCGGCGGCCG
CAGGTGTCCAGGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGTAGTAGC
AGCAGCAGCATCGTAGGTGGCGGCGCGAGCGGTTCGGACGGCGGTGGGAG
CCGGAGCGGTGGTGGCGGCAGCGGAGGCGACGGTGGCGATGACAAGAGAT
CGGAAGCTTCGGGGCGGGCGGAAAGGGAGAACGAGGAGGAGGAAGAGGAG
GACGACGACGACGATGAGGGTGCCGCAGAGGGTGGCGGGTCGGCGGAGGA
CCACAAAGAAGAAAACGATTCCAGCAGCGCCATGTCTGGGGCGCTCGCCG
CTGGGGACACAGACCTCGACGACGACCCGCCGGTTGCCGGAGGGGCTGCT
GCGGGGGCCGAGGAACAACAACTCGTACATGATGTAGAGGGGGCGGCGGC
AGCAGCACCAGAAGCACCAGCAGCAGGCGATGACAACAACGCGGAGGTAG
CCGCCAACAATCACGGCGAGAGCGTCGATCTGACCCAAAGCGACGAAGAA
GAGGAGGAGGAAGAGGAAGAAGGCCGAGGTCCATGCCCGCTGTGTGGGAA
GAGCTTCCCGCTAACTAAGATAGATGCTCACGCCAACGCCTGTTTGGATG
AGAGCATCGCCGTCCCGCCGGCCGAAGGCCCCAACGCGGCGAGCGGGGGC
GGTGGAAGCGGGGGCGCGGGTGGAGGCGGAAGCAGCTCGCCCGCGAGTTC
GGCCCAGGGCGCTGCTGGTATTGCTGGCGGTGATGTCGAAGGCAAAGTCG
AAGGCAAAGGCACGTGCCTGATGTGCTCGAAACTCTTCCCGTTTGCGGAG
CTGCAGGCCCACACCAACCAATGCTTGGATGCGGATATCCAAAAGGACGA
GGAGAAGAAGAAGAAGAAAGAGCGGGCGGAGAGATGAAGGGCAAGACGGG
AAGCGGGGATGGGGCCGCGGGAGCAGGAAAGTGGGGCGTGGACGGAGATG
GTCCGGAAGCGGCAGAATTGCTATTTTCCGCGTTTCCTCCGTCGTCCGAC
GAGGACTCCGAAGATGAACGCCGGTCCCCCGCCGGTCGCAAGCGCACCGG
CGGAATCAGCCACACCAGAAAGAGCGGCGCTGCGGGCGCACCGCCGGCGT
CAACGGCCGCGGCGACGTCAACAGCGGCGGCCGCAGGTGTCCAGGGCGGC
GGCGGCGGCGGCAGCGGCGGCGGCGGTAGTAGCAGCAGCAGCATCGTAGG
TGGCGGCGCGAGCGGTTCGGACGGCGGTGGGAGCCGGAGCGGTGGTGGCG
GCAGCGGAGGCGACGGTGGCGATGACAAGAGATCGGAAGCTTCGGGGCGG
GCGGAAAGGGAGAACGAGGAGGAGGAAGAGGAGGACGACGACGACGATGA
GGGTGCCGCAGAGGGTGGCGGGTCGGCGGAGGACCACAAAGAAGAAAACG
ATTCCAGCAGCGCCATGTCTGGGGCGCTCGCCGCTGGGGACACAGACCTC
GACGACGACCCGCCGGTTGCCGGAGGGGCTGCTGCGGGGGCCGAGGAACA
ACAACTCGTACATGATGTAGAGGGGGCGGCGGCAGCAGCACCAGAAGCAC
CAGCAGCAGGCGATGACAACAACGCGGAGGTAGCCGCCAACAATCACGGC
GAGAGCGTCGATCTGACCCAAAGCGACGAAGAAGAGGAGGAGGAAGAGGA
AGAAGGCCGAGGTCCATGCCCGCTGTGTGGGAAGAGCTTCCCGCTAACTA
AGATAGATGCTCACGCCAACGCCTGTTTGGATGAGAGCATCGCCGTCCCG
CCGGCCGAAGGCCCCAACGCGGCGAGCGGGGGCGGTGGAAGCGGGGGCGC
GGGTGGAGGCGGAAGCAGCTCGCCCGCGAGTTCGGCCCAGGGCGCTGCTG
GTATTGCTGGCGGTGATGTCGAAGGCAAAGTCGAAGGCAAAGGCACGTGC
CTGATGTGCTCGAAACTCTTCCCGTTTGCGGAGCTGCAGGCCCACACCAA
CCAATGCTTGGATGCGGATATCCAAAAGGACGAGGAGAAGAAGAAGAAGA
AAGAGCGGGCGGAGAGGCAGGAGAAGTCGAAGAGGAATCGCCCGGTCGAG
GGCGTTCTGGGCGACATCAGCGGGGCCGAGTCCAGCGGCGGCGGAGCTCG
CTCCTCCCGCGTCAAGAAGGAGCACGGTAACCTCCCCGCCTTCGATGTCG
CTTCGGCTTCCGACGGCGGCAGCAGCGCGCACGAGGACAAGCCTGGTCGA
GCCAATAGCGGCGGCGGCAAGCGGAAGAGTAGAGGGGCAGGAGAAGTCGA
AGAGGAATCGCCCGGTCGAGGGCGTTCTGGGCGACATCAGCGGGGCCGAG
TCCAGCGGCGGCGGAGCTCGCTCCTCCCGCGTCAAGAAGGAGCACGGTAA
CCTCCCCGCCTTCGATGTCGCTTCGGCTTCCGACGGCGGCAGCAGCGCGC
ACGAGGACAAGCCTGGTCGAGCCAATAGCGGCGGCGGCAAGCGGAAGAGT
AGAGGG
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