mRNA_C-linearis_contig107.1046.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1046.1
Unique NamemRNA_C-linearis_contig107.1046.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:392789..393523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size736
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927403.0917096-UTR-C-linearis_contig107:392788..3931241622927403.0917096-UTR-C-linearis_contig107:392788..393124Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 392789..393124 +
1690879680.6958287-UTR-C-linearis_contig107:392788..3931241690879680.6958287-UTR-C-linearis_contig107:392788..393124Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 392789..393124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927403.1045997-CDS-C-linearis_contig107:393124..3935231622927403.1045997-CDS-C-linearis_contig107:393124..393523Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 393125..393523 +
1690879680.7105954-CDS-C-linearis_contig107:393124..3935231690879680.7105954-CDS-C-linearis_contig107:393124..393523Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 393125..393523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1046.1prot_C-linearis_contig107.1046.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 393125..393523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1046.1

>prot_C-linearis_contig107.1046.1 ID=prot_C-linearis_contig107.1046.1|Name=mRNA_C-linearis_contig107.1046.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=133bp
MSRKNETFRYSPNAAYDTFVSCFNGDTAIARERVRVEGVNAASCTVVAPT
MFVCFCHLLDLTPDSRDTAAKIETELGTRHVTSRHAAWCAGVLVCQQRHR
PWHHQSTHLTRNHRHESFGILPSVWAETSPVFI
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mRNA from alignment at C-linearis_contig107:392789..393523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1046.1 ID=mRNA_C-linearis_contig107.1046.1|Name=mRNA_C-linearis_contig107.1046.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at C-linearis_contig107:392789..393523+ (Chordaria linearis ClinC8C monoicous)
CGCCAACAGAGAAGAGGAGCTGGTGGACTGGCCTACACGACTCAGCACCA
TGATCAGGGAGGTGGGAAATGTGACGCATTAGTCGTAGAGTCGTAAACGT
TGGTCGTGATAGTGGTAGGCGGTGATACAGCAGTCAAAGCGTACACAGAC
AGCAGTACACAGCGAACATTGCACTGAATGCAGAAGCGAAAACATTCGAA
GGTGCGGCGGTGTGGCTAACTGCCCAGACGTTGTATTCTGCACGTACATC
CAGTGCGCCAGTATTTTAGTACCGGTAGTTTTTATTTTGTATCTCACCCG
GTAGATCGTTCAGCGCACACAACGCGAAGGGTTGCCATGTCGAGGAAAAA
TGAGACATTCCGGTACTCTCCAAACGCAGCATATGATACCTTTGTGTCAT
GTTTCAATGGAGATACGGCTATAGCAAGGGAACGAGTGAGGGTAGAGGGC
GTGAATGCAGCCAGTTGTACAGTCGTTGCCCCCACCATGTTTGTGTGTTT
CTGTCATCTGCTTGACTTGACGCCCGATAGTAGAGACACAGCGGCCAAAA
TCGAAACGGAACTTGGGACACGTCACGTCACGTCACGCCACGCTGCCTGG
TGTGCTGGTGTGCTGGTGTGCCAACAACGGCACCGCCCGTGGCACCACCA
AAGTACGCACTTGACACGCAACCATCGTCACGAAAGCTTTGGTATTTTGC
CCTCCGTATGGGCAGAAACTTCTCCTGTATTTATC
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Coding sequence (CDS) from alignment at C-linearis_contig107:392789..393523+

>mRNA_C-linearis_contig107.1046.1 ID=mRNA_C-linearis_contig107.1046.1|Name=mRNA_C-linearis_contig107.1046.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at C-linearis_contig107:392789..393523+ (Chordaria linearis ClinC8C monoicous)
ATGTCGAGGAAAAATGAGACATTCCGGTACTCTCCAAACGCAGCATATGA
TACCTTTGTGTCATGTTTCAATGGAGATACGGCTATAGCAAGGGAACGAG
TGAGGGTAGAGGGCGTGAATGCAGCCAGTTGTACAGTCGTTGCCCCCACC
ATGTTTGTGTGTTTCTGTCATCTGCTTGACTTGACGCCCGATAGTAGAGA
CACAGCGGCCAAAATCGAAACGGAACTTGGGACACGTCACGTCACGTCAC
GCCACGCTGCCTGGTGTGCTGGTGTGCTGGTGTGCCAACAACGGCACCGC
CCGTGGCACCACCAAAGTACGCACTTGACACGCAACCATCGTCACGAAAG
CTTTGGTATTTTGCCCTCCGTATGGGCAGAAACTTCTCCTGTATTTATCA
TGTCGAGGAAAAATGAGACATTCCGGTACTCTCCAAACGCAGCATATGAT
ACCTTTGTGTCATGTTTCAATGGAGATACGGCTATAGCAAGGGAACGAGT
GAGGGTAGAGGGCGTGAATGCAGCCAGTTGTACAGTCGTTGCCCCCACCA
TGTTTGTGTGTTTCTGTCATCTGCTTGACTTGACGCCCGATAGTAGAGAC
ACAGCGGCCAAAATCGAAACGGAACTTGGGACACGTCACGTCACGTCACG
CCACGCTGCCTGGTGTGCTGGTGTGCTGGTGTGCCAACAACGGCACCGCC
CGTGGCACCACCAAAGTACGCACTTGACACGCAACCATCGTCACGAAAGC
TTTGGTATTTTGCCCTCCGTATGGGCAGAAACTTCTCCTGTATTTATC
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