mRNA_C-linearis_contig107.1045.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1045.1
Unique NamemRNA_C-linearis_contig107.1045.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 505 bits (1300), Expect = 2.350e-172
Identity = 258/353 (73.09%), Postives = 293/353 (83.00%), Query Frame = 2
Query:    2 EGTFGILK--------------REKCERVAEQLVLASEMEVTKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWRSSVEPWSIADVGLGTFGDDREESFDGGFTGDWDQSGDFGDLQGENTSDSLLSVLRGRAYANLTELCGRAIRTYTDSIPTTSTVGDQSMFADLMRNVEDFVRKNRSGDTEQSSLQV 1018
            EGTF +LK              R KCE++A +L LAS M+ TK+TSLGKGYVE+DVKKS+EK+M+ Y EVGASKYA+EE+W+EMLASSAYDTS + EG  S Q+L+ LATRS  +SND+TN  GHD G GDVCCQVPKEVFEE+EAPDTTMFGTTSLHSF +L+E VEIDC+VKVLYK K DRKVGHLV+VGPG FQLCTCLQLLRRGLQCRHVLAALVT+LKRSDEF G SIHPRWRSSVEPWSIA+V LGTF  D + S+DGGFTGDW+ SGDF DLQG+NTS S+LSVLRGRA+ANLTELC RA+RTYTDS+   ST  DQSMF DLMR+V DFV K RSGDTE+SS QV
Sbjct:  263 EGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKEEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRSVNDSNDSTNVSGHDHGAGDVCCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWEPSGDFEDLQGDNTSVSVLSVLRGRAFANLTELCNRAVRTYTDSMTRDSTTADQSMFGDLMRHVNDFVEKRRSGDTEESSFQV 615          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 3.300e-63
Identity = 123/229 (53.71%), Postives = 165/229 (72.05%), Query Frame = 2
Query:   83 TKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEI---DCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWR-SSVEPWSIADVGLGTFGDDREESFDGGF 757
            TK  SL   ++E DVKK+IE +M +Y + GAS YA+ E+ +EM+AS +YDT+ +V+G  SK++L++LA + +           ++DGNGDVCCQVP +VF+ ++ PDT+MFGTT L SFY+L+  V+I   D VVKV+YK    RKVGHLVV+GP  FQLC CLQL+RRGLQCRHVLAALVT+L R+ EF G  IHPRWR +SV+ WS+  V LG+F ++   S+ G F
Sbjct: 1140 TKAGSLRFAHMEDDVKKAIEPVMKEYEKAGASTYARREIMAEMVASDSYDTTVLVKGRESKRFLEDLAAQPS-----------NNDGNGDVCCQVPADVFDGKKHPDTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYK---RRKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFDEEGRTSYKGRF 1354          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 4.290e-53
Identity = 130/302 (43.05%), Postives = 175/302 (57.95%), Query Frame = 2
Query:    2 EGTFGILKR-----EKCE--RVAEQL-------VLASEMEVTKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYK-PKLDR--KVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWRSSVEPWSIADVGLGTFGDDREESFDGGFTGDWDQSGDFGDLQGENTSDSLLSVLRGRAYAN 856
            EG F +LK+      +C   RV  +L        LAS +  TK  SLG+ +++  V K+ E +  +  +VGAS YA  E+ +EM AS+AYDT+ + +  A      +     A         GG  +G    C  VP E FE    PD TM+GTTSL SF +L+  V I+ VV+V YK P+  R  KV H+VVVGP  FQLCTCL+L+R GL C HV AALVT+L R+ +F G SIHPRWR SV  WS+ +V LGTF  D  E+F GGFT D+   GDF D   ++T ++ ++  R +AY +
Sbjct:  318 EGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAER-------GGRTEG---YCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTF--DGHETFTGGFTEDFG-GGDF-DGDSQDTLNTSVAYTRKKAYVD 605          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.880e-50
Identity = 118/261 (45.21%), Postives = 158/261 (60.54%), Query Frame = 2
Query:   83 TKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYK-PKLDR--KVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWRSSVEPWSIADVGLGTFGDDREESFDGGFTGDWDQSGDFGDLQGENTSDSLLSVLRGRAYAN 856
            TK  SLG+ +++  V K+ E +  +  +VGAS YA  E+ +EM AS+AYDT+ + +  A      +     A         GG  +G    C  VP E FE    PD TM+GTTSL SF +L+  V I+ VV+V YK P+  R  KV H+VVVGP  FQLCTCL+L+R GL C HV AALVT+L R+ +F G SIHPRWR SV  WS+ +V LGTF  D  E+F GGFT D+   GDF D   ++T ++ ++  R +AY +
Sbjct:  705 TKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAER-------GGRTEG---YCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTF--DGHETFTGGFTEDFG-GGDF-DGDSQDTLNTSVAYTRKKAYVD 951          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 8.080e-43
Identity = 87/174 (50.00%), Postives = 109/174 (62.64%), Query Frame = 2
Query:  194 EVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWRS-SVEPWSIADVGL 712
            E  SEML    Y    +VEG  S ++L++L    +             DGNGDVCC+VP+E F+ ++ P+T  FG   L SF++L+  V+ID  VKV YK +    V HLVV+GP RFQ+CTCLQ++RRG QCRHVLAALV    R  EFAG SIHPRWR  S EPWS+  V L
Sbjct:    6 EFMSEMLTFLYYCPEVLVEGKGSMRFLEDLTAHPSNR-----------DGNGDVCCEVPREAFDGKDNPETK-FGAICLQSFFRLVANVKIDAGVKVSYKYR-SPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRS-NRDSEFAGASIHPRWRPRSAEPWSLERVAL 165          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.200e-17
Identity = 76/215 (35.35%), Postives = 98/215 (45.58%), Query Frame = 2
Query:  374 EVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDE---------FAGLSIHPRWRSSVE----PWSIADV------GLGTFGDD--REESFDGGFTGDWDQSGDFGDLQGENTSDSLLSVLRGRAYANLTELCGRAIRTYTDSIPTTSTVGDQSMFADLMR 955
            +  + E A D TM+   SL +F  LIE + I  VV V Y    +R   HLVV GP  F LC+CLQLLRRGL CRH  A LV  + R+ E         F G  +H RWR   +    PWSI+ +      G+G  G D  R+ES+  G T D    G      G    D   S  R R YA+L       +     S+P    +  Q    + +R
Sbjct: 1135 DQLDGEAAVDNTMWARASLSAFLDLIEDIPIQLVVAVRYMRAANRP-SHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDGNDSPWSISSLLSSSGHGVGWDGHDEGRDESY-WGPTCDEAVDGIHPTEPGGGAQDRSASDKR-RVYAHLMAKSKELVGDIMRSVPLHQALSVQDKVGEYLR 1346          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.500e-16
Identity = 54/119 (45.38%), Postives = 65/119 (54.62%), Query Frame = 2
Query:  389 EEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDE---------FAGLSIHPRWRS----SVEPWSIADV 706
            E A D TM+  TSL +F  LIE + I+  V V YK   +R   HLVV G   F LC+CLQLLRRGL CRH  A LV  + R+ E         F G  +H RWR     +  PWSI+ V
Sbjct:  230 EAAVDNTMWARTSLSAFLDLIEDIPIELFVAVRYKRAANRP-SHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREVVNDSPWSISSV 347          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.180e-15
Identity = 53/119 (44.54%), Postives = 65/119 (54.62%), Query Frame = 2
Query:  389 EEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDE---------FAGLSIHPRWRSSVE----PWSIADV 706
            E A D TM+  TSL +F  LIE + I+ VV V YK   +R   HLVV GP  F LC+CLQLLRR L CRH  A LV  + R+ E         F G  +H RWR   +     W+I+ V
Sbjct:  917 EAAVDNTMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRP-SHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISSV 1034          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.670e-15
Identity = 70/205 (34.15%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  167 VGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQY----LKELATRSATESNDTTNGGGHDDGN----------GDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKR-------SDEFAGLSIHPRWRSSVE----PWSIADV 706
            VGAS+Y Q E   E+  S +YD   I  G A  +     L+    R   E+        H D N           ++ C++  E    E   D T++  TSL +   L+ RV +     V YK    R  GH+VVVGPG F LC+CL+ LR GL CRH  A LV  +         + EF G S+H RWR S +    PW+ + V
Sbjct:  184 VGASQYCQLEAKDELGGSQSYDVEVICVGAADDKGHPVPLEGGVLRQQLEA-------AHFDFNLYEEAPPDTDMEIDCKLGPEA---ESTEDNTVWARTSLEAPLDLVSRVPVHLAAAVRYKLTPSRP-GHVVVVGPGGFYLCSCLKFLRHGLPCRHYFAVLVRFIGGKYGGVLLNHEFDGNSVHTRWRQSPDGSDAPWTASRV 377          
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.180e-14
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  365 VPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRH---VLAALVTQLKRSDE------FAGLSIHPRWRSS----VEPWSIADV 706
            + ++   +E A D TM+  TSL +F +L+    I+ V  V YK   +    HLV  GP  F L +CLQLLRRGL CRH   VLA L+ +   SDE      F G  +H RWR S    V PWS++ V
Sbjct:  524 LERDSLADEPAEDNTMWACTSLLAFLELVAGFPIELVAAVRYKYSANNP-SHLVAFGPHNFHLRSCLQLLRRGLPCRHYFAVLANLIGRTGESDEWSFTHAFDGSCVHNRWRQSDDGKVLPWSVSFV 649          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FLF6_ECTSI2.350e-17273.09Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE3.300e-6353.71SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEJ0_9PHAE4.290e-5343.05SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE1.880e-5045.21SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6K4_9PHAE8.080e-4350.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9T1_9PHAE5.200e-1735.35SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L372_9PHAE2.500e-1645.38SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBY4_9PHAE2.180e-1544.54SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2H3_9PHAE5.670e-1534.15SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWM8_9PHAE2.180e-1441.73MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:388779..390458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score492.7
Seed ortholog evalue1.5e-136
Seed eggNOG ortholog2880.D7FLF6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1283
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1045.1prot_C-linearis_contig107.1045.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 388939..390385 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927409.4458234-UTR-C-linearis_contig107:388778..3889381622927409.4458234-UTR-C-linearis_contig107:388778..388938Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 388779..388938 -
1690879684.887597-UTR-C-linearis_contig107:388778..3889381690879684.887597-UTR-C-linearis_contig107:388778..388938Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 388779..388938 -
1622927409.4897325-UTR-C-linearis_contig107:390385..3904581622927409.4897325-UTR-C-linearis_contig107:390385..390458Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 390386..390458 -
1690879684.9307945-UTR-C-linearis_contig107:390385..3904581690879684.9307945-UTR-C-linearis_contig107:390385..390458Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 390386..390458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927409.457585-CDS-C-linearis_contig107:388938..3898681622927409.457585-CDS-C-linearis_contig107:388938..389868Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 388939..389868 -
1690879684.8977253-CDS-C-linearis_contig107:388938..3898681690879684.8977253-CDS-C-linearis_contig107:388938..389868Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 388939..389868 -
1622927409.4677038-CDS-C-linearis_contig107:390024..3901421622927409.4677038-CDS-C-linearis_contig107:390024..390142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 390025..390142 -
1690879684.9068203-CDS-C-linearis_contig107:390024..3901421690879684.9068203-CDS-C-linearis_contig107:390024..390142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 390025..390142 -
1622927409.4763126-CDS-C-linearis_contig107:390383..3903851622927409.4763126-CDS-C-linearis_contig107:390383..390385Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 390384..390385 -
1690879684.9190104-CDS-C-linearis_contig107:390383..3903851690879684.9190104-CDS-C-linearis_contig107:390383..390385Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 390384..390385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1045.1

>prot_C-linearis_contig107.1045.1 ID=prot_C-linearis_contig107.1045.1|Name=mRNA_C-linearis_contig107.1045.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=350bp
MEVTKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASS
AYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPK
EVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHL
VVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWR
SSVEPWSIADVGLGTFGDDREESFDGGFTGDWDQSGDFGDLQGENTSDSL
LSVLRGRAYANLTELCGRAIRTYTDSIPTTSTVGDQSMFADLMRNVEDFV
RKNRSGDTEQSSLQVKDPPTTRSRKQVRTKDCTEQGGKAKKIKTEPGEN*
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mRNA from alignment at C-linearis_contig107:388779..390458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1045.1 ID=mRNA_C-linearis_contig107.1045.1|Name=mRNA_C-linearis_contig107.1045.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1680bp|location=Sequence derived from alignment at C-linearis_contig107:388779..390458- (Chordaria linearis ClinC8C monoicous)
CGAGGGCACTTTCGGCATTCTGAAGAGGGAGAAATGCGAACGGGTTGCGG AACAGCTCGTCCTCGCATCCGAAATGTGAGTGCCTTGTGTCGAATCTTTG CTTCATTCAATAGTTTGTCTCCTTTTTTGGAAAAAGTACATGTACAGAGC CTATCCTCCGCCGGGAAAAGGGGGGGCGGGCGGGGCCGTGGCAGGGCCTT ACTACGCTGTGATGGCCATTTTGTTTCGTAAGCATGTCGGACGCATCGCC ATTTGCTGTAGATAGCTGACGGATGATACATCGCCGTAAACCCGACCGCC CCCATCCAATTTGCAGGGAAGTCACGAAGCGGACCTCCCTGGGGAAAGGC TACGTGGAGCACGACGTCAAGAAATCTATCGAGAAGATCATGTCGAAGTA CATCGAGGTTGGAGCCAGCAAATACGCGCAGGAGGTGAGCTCGTCCCTGG TGGTTTCAGTGCCTCTGATGCTTTCACGCGTGTATGCAATGCTGATACAG AGCGCCGTACCTGTCCAGGTTCCGTCTGTAACCAACACTCGTTGCGTCCT CCCGTCCTTCCTTGCACGCCCTGCACCTTTACTGCCACAGGAAGTTTGGT CCGAGATGTTGGCGAGCTCGGCGTACGACACTTCCACCATAGTGGAAGGA CATGCTTCAAAGCAATACCTCAAGGAATTGGCCACGCGATCAGCCACTGA ATCCAACGACACAACCAACGGCGGTGGGCACGATGATGGAAACGGCGACG TGTGTTGTCAGGTACCTAAAGAGGTATTTGAGGAAGAAGAAGCACCAGAT ACGACCATGTTTGGTACCACGTCGTTGCATTCTTTCTACCAGCTCATAGA GCGCGTGGAAATTGATTGCGTCGTTAAGGTCCTCTACAAGCCCAAGCTTG ACCGCAAAGTGGGCCACCTTGTCGTCGTAGGTCCCGGTAGGTTTCAGCTT TGCACGTGCTTACAACTTTTGAGACGGGGGTTGCAGTGTAGGCACGTCCT CGCCGCGCTTGTCACGCAGTTGAAGCGCAGCGACGAGTTCGCAGGACTAA GCATTCACCCACGGTGGCGTTCGTCTGTTGAACCGTGGAGTATAGCAGAC GTGGGGCTGGGTACGTTCGGTGACGATAGAGAGGAGTCGTTCGATGGCGG GTTCACCGGTGATTGGGACCAGTCAGGTGATTTTGGAGATTTGCAGGGAG AAAACACCTCGGACTCCTTGTTGTCTGTCTTGAGAGGGAGAGCGTACGCC AACCTCACCGAGCTGTGTGGTCGGGCCATTCGCACCTATACGGACAGCAT TCCCACTACGTCCACCGTGGGGGATCAATCCATGTTCGCTGATTTGATGC GCAATGTGGAGGACTTTGTTCGGAAGAATAGAAGTGGCGATACCGAACAG TCTTCGTTGCAAGTGAAGGATCCCCCGACTACCCGAAGCAGGAAGCAAGT TAGAACCAAGGATTGTACCGAGCAAGGAGGGAAGGCGAAAAAGATCAAGA CAGAGCCTGGGGAAAATTAGAGTACCTGTGCCGAGTACCCCACACTTGGG AGAGACGGGTTTAGAATGCGACCTCATTTTTGTTGCTTTAGAATGCGACC TCTTTTTGGTTGCGTGCGGTTTTCCCCTTGAGCGGGGCCCTAACCCACTG GATTATTCCAATCACGCAACGTCGTGTGCG
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Coding sequence (CDS) from alignment at C-linearis_contig107:388779..390458-

>mRNA_C-linearis_contig107.1045.1 ID=mRNA_C-linearis_contig107.1045.1|Name=mRNA_C-linearis_contig107.1045.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at C-linearis_contig107:388779..390458- (Chordaria linearis ClinC8C monoicous)
ATATGGAAGTCACGAAGCGGACCTCCCTGGGGAAAGGCTACGTGGAGCAC
GACGTCAAGAAATCTATCGAGAAGATCATGTCGAAGTACATCGAGGTTGG
AGCCAGCAAATACGCGCAGGAGGGAAGTCACGAAGCGGACCTCCCTGGGG
AAAGGCTACGTGGAGCACGACGTCAAGAAATCTATCGAGAAGATCATGTC
GAAGTACATCGAGGTTGGAGCCAGCAAATACGCGCAGGAGGAAGTTTGGT
CCGAGATGTTGGCGAGCTCGGCGTACGACACTTCCACCATAGTGGAAGGA
CATGCTTCAAAGCAATACCTCAAGGAATTGGCCACGCGATCAGCCACTGA
ATCCAACGACACAACCAACGGCGGTGGGCACGATGATGGAAACGGCGACG
TGTGTTGTCAGGTACCTAAAGAGGTATTTGAGGAAGAAGAAGCACCAGAT
ACGACCATGTTTGGTACCACGTCGTTGCATTCTTTCTACCAGCTCATAGA
GCGCGTGGAAATTGATTGCGTCGTTAAGGTCCTCTACAAGCCCAAGCTTG
ACCGCAAAGTGGGCCACCTTGTCGTCGTAGGTCCCGGTAGGTTTCAGCTT
TGCACGTGCTTACAACTTTTGAGACGGGGGTTGCAGTGTAGGCACGTCCT
CGCCGCGCTTGTCACGCAGTTGAAGCGCAGCGACGAGTTCGCAGGACTAA
GCATTCACCCACGGTGGCGTTCGTCTGTTGAACCGTGGAGTATAGCAGAC
GTGGGGCTGGGTACGTTCGGTGACGATAGAGAGGAGTCGTTCGATGGCGG
GTTCACCGGTGATTGGGACCAGTCAGGTGATTTTGGAGATTTGCAGGGAG
AAAACACCTCGGACTCCTTGTTGTCTGTCTTGAGAGGGAGAGCGTACGCC
AACCTCACCGAGCTGTGTGGTCGGGCCATTCGCACCTATACGGACAGCAT
TCCCACTACGTCCACCGTGGGGGATCAATCCATGTTCGCTGATTTGATGC
GCAATGTGGAGGACTTTGTTCGGAAGAATAGAAGTGGCGATACCGAACAG
TCTTCGTTGCAAGTGAAGGATCCCCCGACTACCCGAAGCAGGAAGCAAGT
TAGAACCAAGGATTGTACCGAGCAAGGAGGGAAGGCGAAAAAGATCAAGA
CAGAGCCTGGGGAAAATTAGGAAGTTTGGTCCGAGATGTTGGCGAGCTCG
GCGTACGACACTTCCACCATAGTGGAAGGACATGCTTCAAAGCAATACCT
CAAGGAATTGGCCACGCGATCAGCCACTGAATCCAACGACACAACCAACG
GCGGTGGGCACGATGATGGAAACGGCGACGTGTGTTGTCAGGTACCTAAA
GAGGTATTTGAGGAAGAAGAAGCACCAGATACGACCATGTTTGGTACCAC
GTCGTTGCATTCTTTCTACCAGCTCATAGAGCGCGTGGAAATTGATTGCG
TCGTTAAGGTCCTCTACAAGCCCAAGCTTGACCGCAAAGTGGGCCACCTT
GTCGTCGTAGGTCCCGGTAGGTTTCAGCTTTGCACGTGCTTACAACTTTT
GAGACGGGGGTTGCAGTGTAGGCACGTCCTCGCCGCGCTTGTCACGCAGT
TGAAGCGCAGCGACGAGTTCGCAGGACTAAGCATTCACCCACGGTGGCGT
TCGTCTGTTGAACCGTGGAGTATAGCAGACGTGGGGCTGGGTACGTTCGG
TGACGATAGAGAGGAGTCGTTCGATGGCGGGTTCACCGGTGATTGGGACC
AGTCAGGTGATTTTGGAGATTTGCAGGGAGAAAACACCTCGGACTCCTTG
TTGTCTGTCTTGAGAGGGAGAGCGTACGCCAACCTCACCGAGCTGTGTGG
TCGGGCCATTCGCACCTATACGGACAGCATTCCCACTACGTCCACCGTGG
GGGATCAATCCATGTTCGCTGATTTGATGCGCAATGTGGAGGACTTTGTT
CGGAAGAATAGAAGTGGCGATACCGAACAGTCTTCGTTGCAAGTGAAGGA
TCCCCCGACTACCCGAAGCAGGAAGCAAGTTAGAACCAAGGATTGTACCG
AGCAAGGAGGGAAGGCGAAAAAGATCAAGACAGAGCCTGGGGAAAATTAG
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